View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6692_low_31 (Length: 265)

Name: NF6692_low_31
Description: NF6692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6692_low_31
NF6692_low_31
[»] chr1 (2 HSPs)
chr1 (19-231)||(22587920-22588132)
chr1 (113-209)||(5325925-5326022)
[»] chr8 (3 HSPs)
chr8 (19-231)||(15347814-15348027)
chr8 (19-231)||(15436879-15437092)
chr8 (19-231)||(15528183-15528396)
[»] chr2 (2 HSPs)
chr2 (19-231)||(18366643-18366851)
chr2 (90-229)||(30974927-30975067)
[»] chr5 (1 HSPs)
chr5 (90-229)||(19909871-19910011)
[»] chr7 (1 HSPs)
chr7 (99-229)||(12762316-12762447)
[»] chr6 (1 HSPs)
chr6 (99-229)||(7404531-7404662)


Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 19 - 231
Target Start/End: Complemental strand, 22588132 - 22587920
Alignment:
Q  19 atcttcgcatttttaacttctcaagcttggactgatacggacatctaatactcaagagttgaagcccttgatttggtacacatccaaaggcaatgatttt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22588132 atcttcgcatttttaacttctcaagcttggactgatacggacatctaatactcaagagttgaagcccttgatttggtacacatccaaaggcaatgatttt 22588033  T
Q  119 gagttaatattttcttccttttctgtagctatttcaattaataaatcaactatgttatttaccaatggagttctatagtccccatacatttgtgttgttg 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  22588032 gagttaatattttcttccttttctgtagctatttcaattaataaatcaactatgttatttaccaatggagttctatagtccccatacatttgtcttgttg 22587933  T
Q  219 caatcatatataa 231  Q
    |||||||||||||    
T  22587932 caatcatatataa 22587920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 113 - 209
Target Start/End: Complemental strand, 5326022 - 5325925
Alignment:
Q  113 gattttgagttaatattttcttccttttc-tgtagctatttcaattaataaatcaactatgttatttaccaatggagttctatagtccccatacattt 209  Q
    ||||||| ||||||||||||||| ||||  ||||||||||||||||| |||| ||||| ||||||||||||| | ||| ||||||||||| |||||||    
T  5326022 gattttgggttaatattttcttcatttttatgtagctatttcaattattaaaccaactttgttatttaccaaggaagtcctatagtccccttacattt 5325925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 182; Significance: 2e-98; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 19 - 231
Target Start/End: Complemental strand, 15348027 - 15347814
Alignment:
Q  19 atcttcgcatttttaacttctcaagcttggactgatacggacatctaatactcaagagttgaagcccttgatttggtacacatccaaaggcaatgatttt 118  Q
    |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  15348027 atcttcgcatttttaacttctcaagcttggactgatacagacatctactactcaagagttgaagccctagatttggtacacatccaaaggcaatgatttt 15347928  T
Q  119 gagttaatattttc-ttccttttctgtagctatttcaattaataaatcaactatgttatttaccaatggagttctatagtccccatacatttgtgttgtt 217  Q
    |||||||||||||| ||| |||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  15347927 gagttaatattttctttctttttatgtagctatttcaattaataaatcaactttgttatttaccaatggagttctatagtccccatacatttgtgttgtt 15347828  T
Q  218 gcaatcatatataa 231  Q
    ||||||||||||||    
T  15347827 gcaatcatatataa 15347814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 19 - 231
Target Start/End: Complemental strand, 15437092 - 15436879
Alignment:
Q  19 atcttcgcatttttaacttctcaagcttggactgatacggacatctaatactcaagagttgaagcccttgatttggtacacatccaaaggcaatgatttt 118  Q
    |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  15437092 atcttcgcatttttaacttctcaagcttggactgatacagacatctactactcaagagttgaagccctagatttggtacacatccaaaggcaatgatttt 15436993  T
Q  119 gagttaatattttc-ttccttttctgtagctatttcaattaataaatcaactatgttatttaccaatggagttctatagtccccatacatttgtgttgtt 217  Q
    |||||||||||||| ||| |||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  15436992 gagttaatattttctttctttttatgtagctatttcaattaataaatcaactttgttatttaccaatggagttctatagtccccatacatttgtgttgtt 15436893  T
Q  218 gcaatcatatataa 231  Q
    ||||||||||||||    
T  15436892 gcaatcatatataa 15436879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 19 - 231
Target Start/End: Complemental strand, 15528396 - 15528183
Alignment:
Q  19 atcttcgcatttttaacttctcaagcttggactgatacggacatctaatactcaagagttgaagcccttgatttggtacacatccaaaggcaatgatttt 118  Q
    |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  15528396 atcttcgcatttttaacttctcaagcttggactgatacagacatctactactcaagagttgaagccctagatttggtacacatccaaaggcaatgatttt 15528297  T
Q  119 gagttaatattttc-ttccttttctgtagctatttcaattaataaatcaactatgttatttaccaatggagttctatagtccccatacatttgtgttgtt 217  Q
    |||||||||||||| ||| |||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  15528296 gagttaatattttctttctttttatgtagctatttcaattaataaatcaactttgttatttaccaatggagttctatagtccccatacatttgtgttgtt 15528197  T
Q  218 gcaatcatatataa 231  Q
    ||||||||||||||    
T  15528196 gcaatcatatataa 15528183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 162; Significance: 2e-86; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 19 - 231
Target Start/End: Original strand, 18366643 - 18366851
Alignment:
Q  19 atcttcgcatttttaacttctcaagc-ttggactgatacggacatctaatactcaagagttgaagcccttgatttggtacacatccaaaggcaatgattt 117  Q
    |||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||    
T  18366643 atcttcgcatttttaacttctcaagcattggactgatacagacatctaatactcaagagttgaagcacttgatttggtacacattcaaaggcaatgattt 18366742  T
Q  118 tgagttaatattttcttccttttctgtagctatttcaattaataaatcaactatgttatttaccaatggagttctatagtccccatacatttgtgttgtt 217  Q
    ||||||||||||||| ||     ||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||    
T  18366743 tgagttaatattttcatc-----ctgtagctatttcaattaataaatcaactttgttatttatcaatggagttctatagtccccatacatttgtgttgtt 18366837  T
Q  218 gcaatcatatataa 231  Q
    ||||||||||||||    
T  18366838 gcaatcatatataa 18366851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 90 - 229
Target Start/End: Complemental strand, 30975067 - 30974927
Alignment:
Q  90 tttggtacacatccaaaggcaatgattttgagttaatattttcttcctttt-ctgtagctatttcaattaataaatcaactatgttatttaccaatggag 188  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||    
T  30975067 tttggtacacatccaaaggcaatgattttaagttaatattttcttcctttttctgtagctatttcaattaataaatcaactttgttatttaccaatggag 30974968  T
Q  189 ttctatagtccccatacatttgtgttgttgcaatcatatat 229  Q
    ||||||| |||||||||||||||||||||||||||||||||    
T  30974967 ttctatattccccatacatttgtgttgttgcaatcatatat 30974927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 90 - 229
Target Start/End: Original strand, 19909871 - 19910011
Alignment:
Q  90 tttggtacacatccaaaggcaatgattttgagttaatattttcttcctttt-ctgtagctatttcaattaataaatcaactatgttatttaccaatggag 188  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||    
T  19909871 tttggtacacatccaaaggcaatgattttaagttaatattttcttcctttttctgtagctatttcaattaataaatcaactttgttatttaccaatggag 19909970  T
Q  189 ttctatagtccccatacatttgtgttgttgcaatcatatat 229  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  19909971 ttctatagtccccatacatttgtgttgttgcaatcatatat 19910011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 116; Significance: 4e-59; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 99 - 229
Target Start/End: Complemental strand, 12762447 - 12762316
Alignment:
Q  99 catccaaaggcaatgattttgagttaatattttcttcctttt-ctgtagctatttcaattaataaatcaactatgttatttaccaatggagttctatagt 197  Q
    |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  12762447 catccaaaggcaatgattttaagttaatattttcttcctttttctgtagctatttcaattaataaatcaactttgttatttaccaatggagttctatagt 12762348  T
Q  198 ccccatacatttgtgttgttgcaatcatatat 229  Q
    ||||||||||||||||||||||||||||||||    
T  12762347 ccccatacatttgtgttgttgcaatcatatat 12762316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 116; Significance: 4e-59; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 99 - 229
Target Start/End: Complemental strand, 7404662 - 7404531
Alignment:
Q  99 catccaaaggcaatgattttgagttaatattttcttcctttt-ctgtagctatttcaattaataaatcaactatgttatttaccaatggagttctatagt 197  Q
    |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  7404662 catccaaaggcaatgattttaagttaatattttcttcctttttctgtagctatttcaattaataaatcaactttgttatttaccaatggagttctatagt 7404563  T
Q  198 ccccatacatttgtgttgttgcaatcatatat 229  Q
    ||||||||||||||||||||||||||||||||    
T  7404562 ccccatacatttgtgttgttgcaatcatatat 7404531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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