View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6692_low_32 (Length: 256)
Name: NF6692_low_32
Description: NF6692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6692_low_32 |
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Alignment Details
Target: chr3 (Bit Score: 162; Significance: 1e-86; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 6 - 183
Target Start/End: Original strand, 4638409 - 4638586
Alignment:
| Q |
6 |
aacacacacacagttgccaagtaggagagtacatattactatagaaaacaaacagctcggtaactaagaccacttattcagtacatatacatttcataac |
105 |
Q |
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| T |
4638409 |
aacacacacacagttgccaagtaggagagtacatattactatagaaaacaaacagcttggtaactaggaccacttattcagtacatatacatttcataac |
4638508 |
T |
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| Q |
106 |
tctcatttcatactttagaaatgagtgttatcttcttttggagggtggtgaggatgtggtttgggaaagttggtagga |
183 |
Q |
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| T |
4638509 |
tctcatttcatagtttagaaatgagtgttatcttcttttggagggtggtgaggatgtggtttgggtaagttggtagga |
4638586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 7 - 191
Target Start/End: Original strand, 4762813 - 4762997
Alignment:
| Q |
7 |
acacacacacagttgccaagtaggagagtacatattactatagaaaacaaacagctcggtaactaagaccacttattcagtacatatacatttcataact |
106 |
Q |
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| T |
4762813 |
acacacacagagttgccaagtaggagagtacatattactatagaaaacaaacagcttggtaactaggaccacttattcagtacatatacatttcataact |
4762912 |
T |
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| Q |
107 |
ctcatttcatactttagaaatgagtgttatcttcttttggagggtggtgaggatgtggtttgggaaagttggtaggatgtgtagg |
191 |
Q |
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| T |
4762913 |
ctcatttcatactttagaaatgattgttatcttcttttggagggtggtgaggatgtggtttgggtaagttggtaggatgtatagg |
4762997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 14 - 161
Target Start/End: Complemental strand, 4177248 - 4177099
Alignment:
| Q |
14 |
cacagttgccaagtaggagagtacatattactata--gaaaacaaacagctcggtaactaagaccacttattcagtacatatacatttcataactctcat |
111 |
Q |
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| T |
4177248 |
cacagttgccaagtaggagagtacatattactatatagaaaacaaacagcttggtaactagaaccacttattcagtacatatatatttcataactctcat |
4177149 |
T |
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| Q |
112 |
ttcatactttagaaatgagtgttatcttcttttggagggtggtgaggatg |
161 |
Q |
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| T |
4177148 |
ttcatactttagaaatgagtgttatcttcttttggagggtggtgaggatg |
4177099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 7 - 161
Target Start/End: Complemental strand, 4181081 - 4180925
Alignment:
| Q |
7 |
acacacacacagttgccaagtaggagagtacatattactatagaaaacaaacagctcggtaactaagaccacttattcagtacatatacat--ttcataa |
104 |
Q |
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| T |
4181081 |
acacacacacatttgccaagtaggagagtacatattactatagaaaacaaacagcttggtaactaggaccacctattcagtacatatatatagttcaaaa |
4180982 |
T |
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| Q |
105 |
ctctcatttcatactttagaaatgagtgttatcttcttttggagggtggtgaggatg |
161 |
Q |
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| T |
4180981 |
ctctcatttcatactttagaaatgagtgttatcttcttttggagggtggtgaggatg |
4180925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 40 - 85
Target Start/End: Original strand, 4808894 - 4808939
Alignment:
| Q |
40 |
attactatagaaaacaaacagctcggtaactaagaccacttattca |
85 |
Q |
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| T |
4808894 |
attactacagaaaacaaacagctccgtaactaagaccaattattca |
4808939 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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