View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6692_low_40 (Length: 238)
Name: NF6692_low_40
Description: NF6692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6692_low_40 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 14 - 238
Target Start/End: Original strand, 42842608 - 42842832
Alignment:
| Q |
14 |
acatcaaacgttgtaaaaaatttaggcatgttttaaacattatttgtatacttgtgcatacttttatacattgtagagttttaatcattgagtttattct |
113 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |
|
|
| T |
42842608 |
acatcaaacgttgtaaattttttaggcatgttttaaacattatttgtatacttgtgcatacttttattcattgtagagttctaatcattgagtttattct |
42842707 |
T |
|
| Q |
114 |
cagaatctctgatggaggactctggcaattttgatgtaagttgtggcggagagagggtatcgatgactccgtatcaaaatctgatgatgccgaagtctaa |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| ||||||||| |
|
|
| T |
42842708 |
cagaatctctgatggaggactctggcaattttgatgtaagttgtggcggagagagtgtatcgatgactctgtatcaaaatctgatgatgctgaagtctaa |
42842807 |
T |
|
| Q |
214 |
actcccacctctcaatgttagcttt |
238 |
Q |
| |
|
|||| ||||||||||||||||||| |
|
|
| T |
42842808 |
gctccaacctctcaatgttagcttt |
42842832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 107; Significance: 9e-54; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 14 - 232
Target Start/End: Complemental strand, 7364369 - 7364144
Alignment:
| Q |
14 |
acatcaaacgttgtaaaaaatttaggcatgttttaaacattatttgtatacttgtgcatacttttatacattgtagagttttaatcatt-----gagttt |
108 |
Q |
| |
|
||||||||||||||||| | | |||||| ||| ||||||||||||||||||||| | |||| | | |||||||||||| |||||||| || ||| |
|
|
| T |
7364369 |
acatcaaacgttgtaaattttgttggcatgatttcaacattatttgtatacttgtggaaacttcttttcattgtagagttctaatcattatattgaattt |
7364270 |
T |
|
| Q |
109 |
attctcagaatctctgatggaggactctggcaattttgatgtaagttgtggcggagagagggtatcgatgactccgtatcaaaatctgatgatgccgaag |
208 |
Q |
| |
|
||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| ||| |||| |
|
|
| T |
7364269 |
attttcagaatctctgatggaggactctagcaattttgatgtaagttgtggcggagagagtgtatcgatgactctgtatcaaaatctgatgttgctgaag |
7364170 |
T |
|
| Q |
209 |
tc--taaactcccacctctcaatgtt |
232 |
Q |
| |
|
|| ||| |||| ||||||||||||| |
|
|
| T |
7364169 |
tctataagctccaacctctcaatgtt |
7364144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University