View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6692_low_5 (Length: 570)
Name: NF6692_low_5
Description: NF6692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6692_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 250; Significance: 1e-138; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 29258594 - 29258847
Alignment:
| Q |
1 |
gccgccgtagccacaaggtttaataacgagcctttcaaatctcatcaatatccattgcaccaccatcatcatcatcactcacactatggtagtgttggac |
100 |
Q |
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| T |
29258594 |
gccgccgtagccacaaggtttaataacgaacctttcaaatctcatcaatatccattgcaccaccatcatcatcatcactcacactatggtagtgttggac |
29258693 |
T |
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| Q |
101 |
ttggaagctcagaagcatccatgatgagatcaaggtttttgcctaaattaccgacaaaaagaagcatgagagcaccaagaatgcgatggacaagtactct |
200 |
Q |
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| T |
29258694 |
ttggaagctcagaagcatccatgatgagatcaaggtttttgcctaaattaccgacaaaaagaagcatgagagcaccaagaatgcgatggacaagtactct |
29258793 |
T |
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| Q |
201 |
tcatgctagatttgttcatgctgttgagcttcttggtggccatgaaagtaaaca |
254 |
Q |
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| T |
29258794 |
tcatgctagatttgttcatgctgttgagcttcttggtggccatgaaagtaaaca |
29258847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 296 - 361
Target Start/End: Original strand, 29258889 - 29258954
Alignment:
| Q |
296 |
agagacagtgatactaatgaccattttacacctgtatcagatttgatcttcgtcttttgagattac |
361 |
Q |
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| T |
29258889 |
agagacagtgatactaatgaccattttacacctgtatcagatttgatcttcgttttttgagattac |
29258954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 426 - 468
Target Start/End: Original strand, 29259044 - 29259086
Alignment:
| Q |
426 |
gagtgttgtttagtacttgttacttgtgagagtgagactaaac |
468 |
Q |
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| T |
29259044 |
gagtgttgtttagtacttgttacttgtgagagtgagactaaac |
29259086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 528 - 569
Target Start/End: Original strand, 29259146 - 29259187
Alignment:
| Q |
528 |
gctaatgtaatttagatggtgaattttaggagcaacaccaaa |
569 |
Q |
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| T |
29259146 |
gctaatgtaatttagatggtgaattttaggagcaacaccaaa |
29259187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 155 - 250
Target Start/End: Original strand, 12344516 - 12344611
Alignment:
| Q |
155 |
caaaaagaagcatgagagcaccaagaatgcgatggacaagtactcttcatgctagatttgttcatgctgttgagcttcttggtggccatgaaagta |
250 |
Q |
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| T |
12344516 |
caaaaagaagcatgagagctccaaggatgcgttggactactacacttcatgctcgatttgttcatgctgttgaactcttaggtggccatgaaagta |
12344611 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 250
Target Start/End: Complemental strand, 26580153 - 26580068
Alignment:
| Q |
165 |
catgagagcaccaagaatgcgatggacaagtactcttcatgctagatttgttcatgctgttgagcttcttggtggccatgaaagta |
250 |
Q |
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| T |
26580153 |
catgagggctccaagaatgcggtggactagctcgcttcataatcgatttgttcacgccgttgagcttctcggcggccatgaaagta |
26580068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 211 - 251
Target Start/End: Complemental strand, 27568763 - 27568723
Alignment:
| Q |
211 |
tttgttcatgctgttgagcttcttggtggccatgaaagtaa |
251 |
Q |
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| T |
27568763 |
tttgttcatgctgttgaacttttaggtggccatgaaagtaa |
27568723 |
T |
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