View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6692_low_7 (Length: 513)
Name: NF6692_low_7
Description: NF6692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6692_low_7 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 443; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 1 - 513
Target Start/End: Original strand, 37843974 - 37844498
Alignment:
| Q |
1 |
gtacctgacatgagtaagagagagaccttgaatcttcttcttcttggtgctctttcacttcctactgctggaatgcttgttccttatggatccttccttg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37843974 |
gtacctgacatgagtaagagagagaccttgaatcttcttcttcttggtgctctttcacttcctactgctggaatgcttgttccttatggatccttccttg |
37844073 |
T |
|
| Q |
101 |
ttccaccagggttagnnnnnnnattttattgtatttctagttcatgtatgtaatgttgtatagtataggaagcactaacacagaca------------at |
188 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
37844074 |
ttccaccagggttagtttttttattttattgtatttctagttcatgtatgtaatgttgtatagtataggaagcactaacacagacacagacacgaacaat |
37844173 |
T |
|
| Q |
189 |
atacatgcaccaataccgacatgtaaacacaagaaataatttaagaaagtgaaaatgattgtatgtaaccacatatatcaaagttctgtcgatgttagac |
288 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |
|
|
| T |
37844174 |
atacatgcaccgataccgacatgtaaacacaagaaataatttaagaaagtgaaaatgattgtatgtaaccacatgtatcgaagttctgtcgatgttagac |
37844273 |
T |
|
| Q |
289 |
atcaacacctatcgagcccttgaacacgatttcaaattgaagaatccatactagtctgctagataatgtatactaacattttaaatagcaagtgtatacc |
388 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37844274 |
atcaacacctatcgagcccttgaacacgatttcaaattgaagaatccatactagtctgctagataatgtatactaacattttaaatagcaagtgtatacc |
37844373 |
T |
|
| Q |
389 |
aaataatcatcggcttttgattgtactataccttggacctaattcatgtatcttacttttcatatagtcatgcatctttactttgctatcttgtctcata |
488 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
37844374 |
aaataatcatcggcttttgattgtactataccttggacctaattcatgtatcttacttttcatatagtcatgcatcttcactttgctatcttgtctcatt |
37844473 |
T |
|
| Q |
489 |
agcatcaaaggctataacatattgt |
513 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
37844474 |
agcatcaaaggctataacatattgt |
37844498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 202 - 262
Target Start/End: Original strand, 16330969 - 16331029
Alignment:
| Q |
202 |
taccgacatgtaaacacaagaaataatttaagaaagtgaaaatgattgtatgtaaccacat |
262 |
Q |
| |
|
|||||||||||| |||| || |||||||||||||| ||||||||||| |||||||||||| |
|
|
| T |
16330969 |
taccgacatgtagacactagtaataatttaagaaaatgaaaatgattaaatgtaaccacat |
16331029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 206 - 262
Target Start/End: Original strand, 16567286 - 16567342
Alignment:
| Q |
206 |
gacatgtaaacacaagaaataatttaagaaagtgaaaatgattgtatgtaaccacat |
262 |
Q |
| |
|
|||||||| ||||| | |||||||||||||| || ||||||||| |||||||||||| |
|
|
| T |
16567286 |
gacatgtagacacatgcaataatttaagaaaatggaaatgattgaatgtaaccacat |
16567342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University