View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6694_high_12 (Length: 238)
Name: NF6694_high_12
Description: NF6694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6694_high_12 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 87; Significance: 8e-42; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 27919299 - 27919393
Alignment:
| Q |
1 |
accagtaaaacaaaaatcactttgaggtgagggtgagtgctgcatgaatttacatttttgttttgattcacaggtaagactttgtgcagagagag |
95 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
27919299 |
accagtaaaacaaaaatcactttgaggtgagggtgagtgctgcgtgaatttacatttttgttttgattcaccggtaagactttgtgcagagagag |
27919393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 160 - 222
Target Start/End: Original strand, 27919458 - 27919520
Alignment:
| Q |
160 |
atatgaagaagaggaggaggaagaagaaggttttcctcaagtttgaaagttagttcttatgtg |
222 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||| ||||||||||||| ||||||||||| |
|
|
| T |
27919458 |
atatgaagaagaggaggaggaagaagagggttttcctgaagtttgaaagtttgttcttatgtg |
27919520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 13707657 - 13707740
Alignment:
| Q |
1 |
accagtaaaacaaaaatcactttgaggtgagggtgagtgctgcatgaatttacatttttgttttgattcacaggtaagactttg |
84 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||| ||| |||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
13707657 |
accagtaaaacaaaaatcactttgagctgagggtgagtgttgcgtgaatttacatttttgttttgattcatcggtaagactttg |
13707740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 160 - 222
Target Start/End: Original strand, 13707816 - 13707878
Alignment:
| Q |
160 |
atatgaagaagaggaggaggaagaagaaggttttcctcaagtttgaaagttagttcttatgtg |
222 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||| |
|
|
| T |
13707816 |
atatgaagaagaggaggaggaggaagagggttttcctcaagtttgaaagtttgttcttatgtg |
13707878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University