View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6694_high_4 (Length: 432)
Name: NF6694_high_4
Description: NF6694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6694_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 1 - 415
Target Start/End: Original strand, 43591649 - 43592060
Alignment:
| Q |
1 |
aaaaattaatcaattgtatttcttagatttcatattataatcaaccgcttataatggttacaaaaattggttttttaaccttcacgggattggagtatat |
100 |
Q |
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| T |
43591649 |
aaaaattagtcaactgtatttcttagatttcatattataatcaaccgctaataatggttacaaaaattggttttttaaccttcacggaattgcagtatat |
43591748 |
T |
|
| Q |
101 |
tgtcggtttacaatgttgtaaatgtatatccttttttcacttttgtatcacttggagttggaatttttaactttctcctagcaatggtaaaggataggat |
200 |
Q |
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| T |
43591749 |
tgtcggtttacaatgttgtaaatgtatatccttttttcacttttgtatcacttggagttggaatttttaactttctcctagcaatggtgaaggataggat |
43591848 |
T |
|
| Q |
201 |
catttgctggcatagaaaatttagtcatagaaatgattataaccactaannnnnnnattatttccacattgcatgcatgcaaaaatggtaggggatgatg |
300 |
Q |
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| T |
43591849 |
catttgctggcatagaaattttagtcatagaaatgattataaccactaa---atttattatttccacattgcatgcatgcaaaaatggtaggggatgatg |
43591945 |
T |
|
| Q |
301 |
actcaagactatgtatttactttgataaacacaaggtaaatatactggtttgattactttcttttgaggcttagttaatctaatttatgatttattttat |
400 |
Q |
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| T |
43591946 |
actcaagactatgtctttattttgataaacacaaggtaaatatcatggtttgattactttctttcgacgcttagttaatctaatttaggatttattttat |
43592045 |
T |
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| Q |
401 |
tttatttggaatgtg |
415 |
Q |
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| T |
43592046 |
tttatttggaatgtg |
43592060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 257 - 387
Target Start/End: Original strand, 40798538 - 40798668
Alignment:
| Q |
257 |
attatttccacattgcatgcatgcaaaaatggtaggggatgatgactcaagactatgtatttactttgataaacacaaggtaaatatactggtttgatta |
356 |
Q |
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| T |
40798538 |
attatttcagcattgcaggcacacaaaagtggtaggcgatgatgactcaagactatgtctttactttgataaacacaaggtaaatatactggtttgatta |
40798637 |
T |
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| Q |
357 |
ctttcttttgaggcttagttaatctaattta |
387 |
Q |
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| T |
40798638 |
ctttctttcaaggcttggttaatctaattta |
40798668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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