View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6694_high_5 (Length: 349)
Name: NF6694_high_5
Description: NF6694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6694_high_5 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 13 - 331
Target Start/End: Original strand, 26383670 - 26383988
Alignment:
| Q |
13 |
catcaccaaaagaaagaatctctttcaatgcaataatagctttttcttttcccttaacatcttgatgcttcaaaaaccaaatcatgcaatgtaaagaagc |
112 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26383670 |
catcaccaaatgaaagaatctctttcaatgcaataatagctttttcttttcccttaacatcttgatgcttcaaaaaccaaatcatgcaatgtaaagaagc |
26383769 |
T |
|
| Q |
113 |
ttttgaacctaaagatttttgagcttctaattgaagtggaaacatccaattaagtgctgataaaatcacttcaagaacaataacatttttctcaatagaa |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26383770 |
ttttgaacctaaagatttttgagcttctaattgaagtggaaacatccaattaagtgctgataaaatcacttcaagaacaataacatttttctcaatagaa |
26383869 |
T |
|
| Q |
213 |
tcattagcaaaagcatcaaatgctaaagctaatgcactagttgctccattttcaactatgcattttttgttcctctcactttcattactccatttctcca |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26383870 |
tcattagcaaaagcatcaaatgctaaagctaatgcactagttgctccattttcaactatgcattttttgttcctctcactttcattactccatttctcca |
26383969 |
T |
|
| Q |
313 |
ttttttgaaccaatccaat |
331 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
26383970 |
ttttttgaaccaatccaat |
26383988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 13 - 331
Target Start/End: Complemental strand, 21037074 - 21036756
Alignment:
| Q |
13 |
catcaccaaaagaaagaatctctttcaatgcaataatagctttttcttttcccttaacatcttgatgcttcaaaaaccaaatcatgcaatgtaaagaagc |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21037074 |
catcaccaaaagaaagaatctctttcaatgcaataatagctttttcttttcccttaacatcttgatgcttcaaaaaccaaatcatgcaatgtaaagaagc |
21036975 |
T |
|
| Q |
113 |
ttttgaacctaaagatttttgagcttctaattgaagtggaaacatccaattaagtgctgataaaatcacttcaagaacaataacatttttctcaatagaa |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
21036974 |
ttttgaacctaaagatttttgagcttctaattgaagtggaaacatccaattaagtgctgataaaatcacttcaagaacaatatcatttttctcaatagaa |
21036875 |
T |
|
| Q |
213 |
tcattagcaaaagcatcaaatgctaaagctaatgcactagttgctccattttcaactatgcattttttgttcctctcactttcattactccatttctcca |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21036874 |
tcattagcaaaagcatcaaatgctaaagctaatgcactagttgctccattttcaactatgcattttttgttcctctcactttcattactccatttctcca |
21036775 |
T |
|
| Q |
313 |
ttttttgaaccaatccaat |
331 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
21036774 |
ttttttgaaccaatccaat |
21036756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University