View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6694_high_6 (Length: 326)

Name: NF6694_high_6
Description: NF6694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6694_high_6
NF6694_high_6
[»] chr6 (14 HSPs)
chr6 (23-307)||(33388422-33388706)
chr6 (44-272)||(33410350-33410578)
chr6 (31-265)||(33057957-33058191)
chr6 (32-265)||(33272198-33272431)
chr6 (37-265)||(33644052-33644280)
chr6 (22-281)||(28869635-28869893)
chr6 (43-265)||(33263029-33263251)
chr6 (43-255)||(9167177-9167389)
chr6 (23-263)||(33304880-33305120)
chr6 (23-239)||(33285966-33286182)
chr6 (23-261)||(31562259-31562497)
chr6 (39-169)||(33399517-33399647)
chr6 (43-261)||(33359118-33359334)
chr6 (112-270)||(33399344-33399502)
[»] scaffold1408 (1 HSPs)
scaffold1408 (43-255)||(1057-1269)
[»] scaffold0428 (1 HSPs)
scaffold0428 (43-255)||(6803-7015)
[»] chr2 (1 HSPs)
chr2 (23-239)||(17440267-17440483)
[»] chr4 (8 HSPs)
chr4 (124-265)||(31498590-31498731)
chr4 (124-265)||(31157605-31157746)
chr4 (59-241)||(31503638-31503820)
chr4 (122-237)||(31027994-31028109)
chr4 (122-197)||(31526887-31526962)
chr4 (126-263)||(31148705-31148842)
chr4 (59-177)||(31478485-31478603)
chr4 (180-265)||(31032529-31032614)


Alignment Details
Target: chr6 (Bit Score: 277; Significance: 1e-155; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 23 - 307
Target Start/End: Complemental strand, 33388706 - 33388422
Alignment:
Q  23 atctaagacactccagaaatctagaaaagatagtagattttggagagttcccgaatcttgagtggttaaatttggaattatgtgcgaaccttgttgagtt 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33388706 atctaagacactccagaaatctagaaaagatagtagattttggagagttcccgaatcttgagtggttaaatttggaattatgtgcgaaccttgttgagtt 33388607  T
Q  123 agatccatctattggacttctaagaaagcttgtttacttgaatttggaaggttgcgtaaatctagtaagcatacccaacaacatatccggtcttagctct 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33388606 agatccatctattggacttctaagaaagcttgtttacttgaatttggaaggttgcgtaaatctagtaagcatacccaacaacatatccggtcttagctct 33388507  T
Q  223 cttgaagatctaaatatatgtggctgttccaaagcgtttaacagttcaagcatcatgttgcctactcccatgagaaacacatatt 307  Q
    ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  33388506 cttgaagatctaaatatatgtggttgttccaaagcgtttagcagttcaagcatcatgttgcctactcccatgagaaacacatatt 33388422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 44 - 272
Target Start/End: Complemental strand, 33410578 - 33410350
Alignment:
Q  44 tagaaaagatagtagattttggagagttcccgaatcttgagtggttaaatttggaattatgtgcgaaccttgttgagttagatccatctattggacttct 143  Q
    ||||||||||| |||||||||||||||||||||||||||||| |||||||||||||  |||||  || ||||| ||||| ||| |||| |||||||||||    
T  33410578 tagaaaagataatagattttggagagttcccgaatcttgagtcgttaaatttggaaagatgtgaaaaacttgtggagttggattcatcgattggacttct 33410479  T
Q  144 aagaaagcttgtttacttgaatttggaaggttgcgtaaatctagtaagcatacccaacaacatatccggtcttagctctcttgaagatctaaatatatgt 243  Q
    |||||||||||||||||||||||||||   |||| ||||| |||||||||||||||||| ||||| | ||||||||||||||||||||||| |||| |||    
T  33410478 aagaaagcttgtttacttgaatttggactattgcataaatttagtaagcatacccaacagcatattctgtcttagctctcttgaagatctatatatgtgt 33410379  T
Q  244 ggctgttccaaagcgtttaacagttcaag 272  Q
    ||||||||||||| |||||||| ||||||    
T  33410378 ggctgttccaaagtgtttaacaattcaag 33410350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 31 - 265
Target Start/End: Complemental strand, 33058191 - 33057957
Alignment:
Q  31 cactccagaaatctagaaaagatagtagattttggagagttcccgaatcttgagtggttaaatttggaattatgtgcgaaccttgttgagttagatccat 130  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||| ||||||||  ||||   |||||||||||||| |||||||    
T  33058191 cactccagaaatctagaaaagataatagattttggagagttcccgaatcttgagcgtttagatttggaaggatgtataaaccttgttgagttggatccat 33058092  T
Q  131 ctattggacttctaagaaagcttgtttacttgaatttggaaggttgcgtaaatctagtaagcatacccaacaacatatccggtcttagctctcttgaaga 230  Q
    ||||||||||||||||||||||||||||||||||  |  ||| ||||  || |||||| ||||||||||||||||||| |||||||||||||||| || |    
T  33058091 ctattggacttctaagaaagcttgtttacttgaacctaaaagattgcaaaagtctagttagcatacccaacaacatattcggtcttagctctcttcaata 33057992  T
Q  231 tctaaatatatgtggctgttccaaagcgtttaaca 265  Q
     |||||||| ||||||||||||||||  |||||||    
T  33057991 cctaaatatgtgtggctgttccaaagtatttaaca 33057957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 32 - 265
Target Start/End: Complemental strand, 33272431 - 33272198
Alignment:
Q  32 actccagaaatctagaaaagatagtagattttggagagttcccgaatcttgagtggttaaatttggaattatgtgcgaaccttgttgagttagatccatc 131  Q
    |||||||||| |||  |||||| |||||||||||||||||||||||||||||||||||||||||||||   |||   || ||||| ||||| ||||||||    
T  33272431 actccagaaaactattaaagattgtagattttggagagttcccgaatcttgagtggttaaatttggaagggtgtaaaaatcttgtggagttggatccatc 33272332  T
Q  132 tattggacttctaagaaagcttgtttacttgaatttggaaggttgcgtaaatctagtaagcatacccaacaacatatccggtcttagctctcttgaagat 231  Q
    ||||||||||||||||||||||||||||||||||||  ||  ||||  |||||||||||||||||||||||||||||  | |||| ||||||||||||||    
T  33272331 tattggacttctaagaaagcttgtttacttgaatttaaaaaattgcaaaaatctagtaagcatacccaacaacatatttgatctttgctctcttgaagat 33272232  T
Q  232 ctaaatatatgtggctgttccaaagcgtttaaca 265  Q
    ||||||||  |||| ||||| |||| ||||||||    
T  33272231 ctaaatatgcgtggttgttctaaagtgtttaaca 33272198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 37 - 265
Target Start/End: Original strand, 33644052 - 33644280
Alignment:
Q  37 agaaatctagaaaagatagtagattttggagagttcccgaatcttgagtggttaaatttggaattatgtgcgaaccttgttgagttagatccatctattg 136  Q
    ||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||  ||| |  |||||||| ||||| |||  ||||||||    
T  33644052 agaaagctagaaaagataatagattttggagagttcccgaatcttgagtggttaaatttggaaggatgcgtaaaccttgtggagttggatttatctattg 33644151  T
Q  137 gacttctaagaaagcttgtttacttgaatttggaaggttgcgtaaatctagtaagcatacccaacaacatatccggtcttagctctcttgaagatctaaa 236  Q
    ||||| ||||||||||||||||||||||| |  ||| ||| | |||||| |||||||||||||||||||||| | |||||||||||||| ||||||||||    
T  33644152 gacttttaagaaagcttgtttacttgaatgtaaaagattgtgaaaatctggtaagcatacccaacaacatattcagtcttagctctcttcaagatctaaa 33644251  T
Q  237 tatatgtggctgttccaaagcgtttaaca 265  Q
    | |  |||| |||||||||| ||||||||    
T  33644252 tttgggtggttgttccaaagtgtttaaca 33644280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 22 - 281
Target Start/End: Original strand, 28869635 - 28869893
Alignment:
Q  22 catctaagacactccagaaatctagaaaagatagtagattttggagagttcccgaatcttgagtggttaaatttggaattatgtgcgaaccttgttgagt 121  Q
    |||||||| |||||||| ||||||||||||||| ||||||||||||||||||| |||||||||  | |||| ||| ||   |||   |||||||||||||    
T  28869635 catctaagtcactccagcaatctagaaaagataatagattttggagagttcccaaatcttgagaagctaaagttgaaagagtgtataaaccttgttgagt 28869734  T
Q  122 tagatccatctattggacttctaagaaagcttgtttacttgaatttggaaggttgcgtaaatctagtaagcatacccaacaacatatccggtcttagctc 221  Q
    | |||||||||||||||||||||||||||||||| |||||||||||  | ||||||   ||| |||||||  |||| |||||||||| |||||||| |||    
T  28869735 tggatccatctattggacttctaagaaagcttgtatacttgaatttaaacggttgctataatatagtaagtgtacc-aacaacatattcggtcttaactc 28869833  T
Q  222 tcttgaagatctaaatatatgtggctgttccaaagcgtttaacagttcaagcatcatgtt 281  Q
    |||||||||||||||||| | |||||||||||||| |||||||| |||||| ||||||||    
T  28869834 tcttgaagatctaaatatgtctggctgttccaaagtgtttaacaattcaaggatcatgtt 28869893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 43 - 265
Target Start/End: Complemental strand, 33263251 - 33263029
Alignment:
Q  43 ctagaaaagatagtagattttggagagttcccgaatcttgagtggttaaatttggaattatgtgcgaaccttgttgagttagatccatctattggacttc 142  Q
    |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||  |||| | || ||||||||||| |||||||||||||||||||    
T  33263251 ctagaaaagataatagattttggagagttcccaaatcttgagtggttaaatttggaaggatgtacaaatcttgttgagttggatccatctattggacttc 33263152  T
Q  143 taagaaagcttgtttacttgaatttggaaggttgcgtaaatctagtaagcatacccaacaacatatccggtcttagctctcttgaagatctaaatatatg 242  Q
    ||||||| ||||||||||||||||| |||  ||||   || || ||||||||||| |||| ||||| ||||||  ||||||||||||||||||||||  |    
T  33263151 taagaaatcttgtttacttgaatttagaaaattgctataaccttgtaagcataccgaacaccatattcggtctgggctctcttgaagatctaaatatcag 33263052  T
Q  243 tggctgttccaaagcgtttaaca 265  Q
    | |||||||||||| ||||||||    
T  33263051 ttgctgttccaaagtgtttaaca 33263029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 43 - 255
Target Start/End: Complemental strand, 9167389 - 9167177
Alignment:
Q  43 ctagaaaagatagtagattttggagagttcccgaatcttgagtggttaaatttggaattatgtgcgaaccttgttgagttagatccatctattggacttc 142  Q
    |||| ||||||| |||||||||||| ||| |||||||||||||||||| ||||||||  |||||  || ||||| ||||| ||||||||| |||||||||    
T  9167389 ctagtaaagatactagattttggagggtttccgaatcttgagtggttagatttggaaggatgtgtaaaacttgtggagttggatccatctcttggacttc 9167290  T
Q  143 taagaaagcttgtttacttgaatttggaaggttgcgtaaatctagtaagcatacccaacaacatatccggtcttagctctcttgaagatctaaatatatg 242  Q
    ||||||||||||||||||||||| |  ||| ||| | ||||||| |||| |||||||||||||||| |||||||||||||||| ||||||||||||| ||    
T  9167289 taagaaagcttgtttacttgaatgtaaaagattgtggaaatctaataagaatacccaacaacatattcggtcttagctctcttaaagatctaaatatgtg 9167190  T
Q  243 tggctgttccaaa 255  Q
    |||||||||||||    
T  9167189 tggctgttccaaa 9167177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 23 - 263
Target Start/End: Complemental strand, 33305120 - 33304880
Alignment:
Q  23 atctaagacactccagaaatctagaaaagatagtagattttggagagttcccgaatcttgagtggttaaatttggaattatgtgcgaaccttgttgagtt 122  Q
    ||||||||||||||  | | |||| ||||||| |||||||||| ||||||||||||||||||  | |||||||||||  ||||   |||||||| |||||    
T  33305120 atctaagacactccttagaactagtaaagatactagattttggggagttcccgaatcttgagaagctaaatttggaaggatgtataaaccttgtggagtt 33305021  T
Q  123 agatccatctattggacttctaagaaagcttgtttacttgaatttggaaggttgcgtaaatctagtaagcatacccaacaacatatccggtcttagctct 222  Q
     ||||||||||||||||||||||||||||||||||||||||||||  | |  |||  ||||||||||||||||||||| ||||||| | |||||||||||    
T  33305020 ggatccatctattggacttctaagaaagcttgtttacttgaatttatatgaatgcaaaaatctagtaagcatacccaataacatattcagtcttagctct 33304921  T
Q  223 cttgaagatctaaatatatgtggctgttccaaagcgtttaa 263  Q
    ||||||||||||||||| | ||| |||||||||| ||||||    
T  33304920 cttgaagatctaaatatgtatggatgttccaaagtgtttaa 33304880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 23 - 239
Target Start/End: Complemental strand, 33286182 - 33285966
Alignment:
Q  23 atctaagacactccagaaatctagaaaagatagtagattttggagagttcccgaatcttgagtggttaaatttggaattatgtgcgaaccttgttgagtt 122  Q
    ||||| || |||||| ||| |||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||  ||||   | |||| | |||||    
T  33286182 atctacgatactccaaaaaactagtaaagatagtagatttcggagagttcccgaatcttgagtggttaaatttggaaggatgtatcagccttttggagtt 33286083  T
Q  123 agatccatctattggacttctaagaaagcttgtttacttgaatttggaaggttgcgtaaatctagtaagcatacccaacaacatatccggtcttagctct 222  Q
     |||||||||||||||||||||||||| |||||||||||||||||  ||| ||||  |||||| |||||||||||||||||||||| |||||| ||||||    
T  33286082 ggatccatctattggacttctaagaaaccttgtttacttgaatttaaaagattgcaaaaatcttgtaagcatacccaacaacatattcggtctaagctct 33285983  T
Q  223 cttgaagatctaaatat 239  Q
    ||| || ||||| ||||    
T  33285982 cttaaatatctatatat 33285966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 23 - 261
Target Start/End: Original strand, 31562259 - 31562497
Alignment:
Q  23 atctaagacactccagaaatctagaaaagatagtagattttggagagttcccgaatcttgagtggttaaatttggaattatgtgcgaaccttgttgagtt 122  Q
    ||||||| ||||||| |||||| | ||||||| |||||||||||| ||||||||||||||||||| ||| |||||||  ||||   |||||||| |||||    
T  31562259 atctaagtcactccataaatcttgtaaagataatagattttggagcgttcccgaatcttgagtggctaagtttggaagaatgtataaaccttgtggagtt 31562358  T
Q  123 agatccatctattggacttctaagaaagcttgtttacttgaatttggaaggttgcgtaaatctagtaagcatacccaacaacatatccggtcttagctct 222  Q
     |||||||||||||||||||||  |||||||  |||||||||||| || || |||   | ||| | |||||||||||||||||||| | |||||||||||    
T  31562359 ggatccatctattggacttctagaaaagctttcttacttgaatttagacggctgctatagtctggaaagcatacccaacaacatattcagtcttagctct 31562458  T
Q  223 cttgaagatctaaatatatgtggctgttccaaagcgttt 261  Q
    |||||||||||||||||  ||||||||||||||| ||||    
T  31562459 cttgaagatctaaatatgcgtggctgttccaaagtgttt 31562497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 39 - 169
Target Start/End: Complemental strand, 33399647 - 33399517
Alignment:
Q  39 aaatctagaaaagatagtagattttggagagttcccgaatcttgagtggttaaatttggaattatgtgcgaaccttgttgagttagatccatctattgga 138  Q
    |||||||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||||||  ||||||||||||||| |||||||||||||||    
T  33399647 aaatctagaaaagataatagattttggagagttcccaaatcttgagtggttagatttggaattatgtaagaaccttgttgagttggatccatctattgga 33399548  T
Q  139 cttctaagaaagcttgtttacttgaatttgg 169  Q
    |||||||||||||||||||||||||||||||    
T  33399547 cttctaagaaagcttgtttacttgaatttgg 33399517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 43 - 261
Target Start/End: Complemental strand, 33359334 - 33359118
Alignment:
Q  43 ctagaaaagatagtagattttggagagttcccgaatcttgagtggttaaatttggaattatgtgcgaaccttgttgagttagatccatctattggacttc 142  Q
    ||||||||||||  |||||||||||  ||||||||||||||   | |||||||| ||  |||||  || ||||| ||||| ||||||||| |||||||||    
T  33359334 ctagaaaagataacagattttggag--ttcccgaatcttgaaaagctaaatttgaaaggatgtgtaaaacttgtggagttggatccatctcttggacttc 33359237  T
Q  143 taagaaagcttgtttacttgaatttggaaggttgcgtaaatctagtaagcatacccaacaacatatccggtcttagctctcttgaagatctaaatatatg 242  Q
    ||| |||||||||||||||||| ||  ||| || |  |||||||||||||||||||||||||||||  |||||||||||||||||||||| |||||| ||    
T  33359236 taaaaaagcttgtttacttgaacttaaaagattacaaaaatctagtaagcatacccaacaacatatttggtcttagctctcttgaagatcaaaatatgtg 33359137  T
Q  243 tggctgttccaaagcgttt 261  Q
     || |||||||||| ||||    
T  33359136 cggttgttccaaagtgttt 33359118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 112 - 270
Target Start/End: Complemental strand, 33399502 - 33399344
Alignment:
Q  112 cttgttgagttagatccatctattggacttctaagaaagcttgtttacttgaatttggaaggttgcgtaaatctagtaagcatacccaacaacatatccg 211  Q
    ||||| ||||| |||||||||||||||||||||||||||||||||| ||||||| |  ||| ||| | |||||| |||||||||||||||||||||| ||    
T  33399502 cttgtggagttggatccatctattggacttctaagaaagcttgtttgcttgaatgtaaaagattgtgaaaatctggtaagcatacccaacaacatattcg 33399403  T
Q  212 gtcttagctctcttgaagatctaaatatatgtggctgttccaaagcgtttaacagttca 270  Q
     |||||||||||||||| ||||||||||   |||||||||||||| |||||||| ||||    
T  33399402 atcttagctctcttgaatatctaaatatgaatggctgttccaaagtgtttaacaattca 33399344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1408 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: scaffold1408
Description:

Target: scaffold1408; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 43 - 255
Target Start/End: Complemental strand, 1269 - 1057
Alignment:
Q  43 ctagaaaagatagtagattttggagagttcccgaatcttgagtggttaaatttggaattatgtgcgaaccttgttgagttagatccatctattggacttc 142  Q
    ||||||||||||| |||||||||| |||| || ||||||||||||||||||||||||  ||||   || ||||| ||||| |||||||||||||||||||    
T  1269 ctagaaaagatagaagattttggacagtttcctaatcttgagtggttaaatttggaaagatgtataaaacttgtggagttggatccatctattggacttc 1170  T
Q  143 taagaaagcttgtttacttgaatttggaaggttgcgtaaatctagtaagcatacccaacaacatatccggtcttagctctcttgaagatctaaatatatg 242  Q
    ||||||||||||||||||||||||| ||  |||||   |||||||||||||||||||||||||||| |||||||||||||||| || |||||||||| |     
T  1169 taagaaagcttgtttacttgaatttagagcgttgctataatctagtaagcatacccaacaacatattcggtcttagctctcttaaatatctaaatatgtc 1070  T
Q  243 tggctgttccaaa 255  Q
    ||| |||||||||    
T  1069 tggatgttccaaa 1057  T

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Target: scaffold0428 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 43 - 255
Target Start/End: Complemental strand, 7015 - 6803
Alignment:
Q  43 ctagaaaagatagtagattttggagagttcccgaatcttgagtggttaaatttggaattatgtgcgaaccttgttgagttagatccatctattggacttc 142  Q
    ||||||||||||| |||||||||| |||| || ||||||||||||||||||||||||  ||||   || ||||| ||||| |||||||||||||||||||    
T  7015 ctagaaaagatagaagattttggacagtttcctaatcttgagtggttaaatttggaaagatgtataaaacttgtggagttggatccatctattggacttc 6916  T
Q  143 taagaaagcttgtttacttgaatttggaaggttgcgtaaatctagtaagcatacccaacaacatatccggtcttagctctcttgaagatctaaatatatg 242  Q
    ||||||||||||||||||||||||| ||  |||||   |||||||||||||||||||||||||||| |||||||||||||||| || |||||||||| |     
T  6915 taagaaagcttgtttacttgaatttagagcgttgctataatctagtaagcatacccaacaacatattcggtcttagctctcttaaatatctaaatatgtc 6816  T
Q  243 tggctgttccaaa 255  Q
    ||| |||||||||    
T  6815 tggatgttccaaa 6803  T

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Target: chr2 (Bit Score: 109; Significance: 8e-55; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 23 - 239
Target Start/End: Original strand, 17440267 - 17440483
Alignment:
Q  23 atctaagacactccagaaatctagaaaagatagtagattttggagagttcccgaatcttgagtggttaaatttggaattatgtgcgaaccttgttgagtt 122  Q
    |||||||  |||| ||||| |||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||  |||||  |  ||||| || ||    
T  17440267 atctaagtgactctagaaagctagaaaagataatggattttggagagttcccaaatcttgagtggttaaatttggaaggatgtgaaagacttgtggaatt 17440366  T
Q  123 agatccatctattggacttctaagaaagcttgtttacttgaatttggaaggttgcgtaaatctagtaagcatacccaacaacatatccggtcttagctct 222  Q
     |||||||| |||||||||||||||||||||||||||||||| ||  ||| ||||   |||||||||||||||||||||||||||| | |||||||||||    
T  17440367 ggatccatcaattggacttctaagaaagcttgtttacttgaacttaaaagattgctataatctagtaagcatacccaacaacatattctgtcttagctct 17440466  T
Q  223 cttgaagatctaaatat 239  Q
    |||||| ||||||||||    
T  17440467 cttgaatatctaaatat 17440483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 124 - 265
Target Start/End: Original strand, 31498590 - 31498731
Alignment:
Q  124 gatccatctattggacttctaagaaagcttgtttacttgaatttggaaggttgcgtaaatctagtaagcatacccaacaacatatccggtcttagctctc 223  Q
    ||||||||||||||||||||||||||| |||||| |||||||||  ||| ||||   ||||| ||||||||||||||||||||||  ||||| |||| ||    
T  31498590 gatccatctattggacttctaagaaagattgtttccttgaatttaaaagattgcaagaatcttgtaagcatacccaacaacatatttggtctcagctttc 31498689  T
Q  224 ttgaagatctaaatatatgtggctgttccaaagcgtttaaca 265  Q
    || ||||||||||||| ||||| |||||| ||| ||||||||    
T  31498690 ttaaagatctaaatatgtgtgggtgttccgaagtgtttaaca 31498731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 124 - 265
Target Start/End: Complemental strand, 31157746 - 31157605
Alignment:
Q  124 gatccatctattggacttctaagaaagcttgtttacttgaatttggaaggttgcgtaaatctagtaagcatacccaacaacatatccggtcttagctctc 223  Q
    |||||||| |||||  |||||||||||||||||| | |||| ||| ||| ||||  |||||||||||||||||| |||||||||   ||||| |||||||    
T  31157746 gatccatcaattggggttctaagaaagcttgttttcatgaaattgaaagattgcaaaaatctagtaagcataccgaacaacatacttggtctcagctctc 31157647  T
Q  224 ttgaagatctaaatatatgtggctgttccaaagcgtttaaca 265  Q
    || || |||||||| | |  || |||||||||| ||||||||    
T  31157646 ttaaatatctaaatctttccgggtgttccaaagtgtttaaca 31157605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 59 - 241
Target Start/End: Original strand, 31503638 - 31503820
Alignment:
Q  59 attttggagagttcccgaatcttgagtggttaaatttggaattatgtgcgaaccttgttgagttagatccatctattggacttctaagaaagcttgttta 158  Q
    ||||||||||||||||||| |||||| || || || |||||  ||||   || |||||  || |||||||||||||||| ||||||| ||||||||||||    
T  31503638 attttggagagttcccgaaccttgagcggctagatctggaaggatgtataaaacttgtgcagatagatccatctattggtcttctaacaaagcttgttta 31503737  T
Q  159 cttgaatttggaaggttgcgtaaatctagtaagcatacccaacaacatatccggtcttagctctcttgaagatctaaatatat 241  Q
    |||||| ||| |||  |||  | || || ||||| ||| || ||||||||  ||||| || | |||||| |||||||||||||    
T  31503738 cttgaacttgaaagactgcaaacatataataagcctactcagcaacatatttggtctcagttgtcttgatgatctaaatatat 31503820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 122 - 237
Target Start/End: Complemental strand, 31028109 - 31027994
Alignment:
Q  122 tagatccatctattggacttctaagaaagcttgtttacttgaatttggaaggttgcgtaaatctagtaagcatacccaacaacatatccggtcttagctc 221  Q
    |||||||||||||||| ||||| ||||||||||| | |||||| ||| ||  ||||  ||||||| |||||||||| ||||||||||  ||||| | |||    
T  31028109 tagatccatctattggtcttctgagaaagcttgtattcttgaacttgaaaaattgcaaaaatctaataagcatacctaacaacatatttggtctcacctc 31028010  T
Q  222 tcttgaagatctaaat 237  Q
    |||| || ||||||||    
T  31028009 tcttaaatatctaaat 31027994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 122 - 197
Target Start/End: Complemental strand, 31526962 - 31526887
Alignment:
Q  122 tagatccatctattggacttctaagaaagcttgtttacttgaatttggaaggttgcgtaaatctagtaagcatacc 197  Q
    |||||||||||||| |  |||||||||| |||||||||||||||||||||| ||||  ||||||||||| ||||||    
T  31526962 tagatccatctattagtgttctaagaaaacttgtttacttgaatttggaagattgcaaaaatctagtaaccatacc 31526887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 126 - 263
Target Start/End: Complemental strand, 31148842 - 31148705
Alignment:
Q  126 tccatctattggacttctaagaaagcttgtttacttgaatttggaaggttgcgtaaatctagtaagcatacccaacaacatatccggtcttagctctctt 225  Q
    ||||||||||||  |||||||||||||||||||| |||||||| ||| ||||  ||| ||| |||  ||||| || || ||||  ||||| |||||||||    
T  31148842 tccatctattggggttctaagaaagcttgtttacctgaatttgaaagattgcaaaaaactaataataataccaaaaaatatatttggtctcagctctctt 31148743  T
Q  226 gaagatctaaatatatgtggctgttccaaagcgtttaa 263  Q
    |||  ||||||| | |  || |||||||||| ||||||    
T  31148742 gaatgtctaaatctttcggggtgttccaaagtgtttaa 31148705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 59 - 177
Target Start/End: Original strand, 31478485 - 31478603
Alignment:
Q  59 attttggagagttcccgaatcttgagtggttaaatttggaattatgtgcgaaccttgttgagttagatccatctattggacttctaagaaagcttgttta 158  Q
    |||||||||||||||||||||||||| || || || |||||  ||||   || |||||  |||| ||||||||| || | ||| |||  |||||||||||    
T  31478485 attttggagagttcccgaatcttgagcggctagatctggaaggatgtataaaacttgtgcagttggatccatctcttagtcttttaacgaagcttgttta 31478584  T
Q  159 cttgaatttggaaggttgc 177  Q
    |||||||||| ||| ||||    
T  31478585 cttgaatttgaaagattgc 31478603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 180 - 265
Target Start/End: Complemental strand, 31032614 - 31032529
Alignment:
Q  180 aaatctagtaagcatacccaacaacatatccggtcttagctctcttgaagatctaaatatatgtggctgttccaaagcgtttaaca 265  Q
    ||||||| |||||||||||||||||||||  ||||| | ||||||| || |||||||| | |  || |||||||||| ||||||||    
T  31032614 aaatctaataagcatacccaacaacatatttggtctcacctctcttaaatatctaaatctttccgggtgttccaaagtgtttaaca 31032529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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