View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6694_high_9 (Length: 273)
Name: NF6694_high_9
Description: NF6694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6694_high_9 |
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| [»] scaffold0294 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 20 - 257
Target Start/End: Complemental strand, 11784367 - 11784130
Alignment:
| Q |
20 |
caattctaagaaaaggactattgtcattatccttaatgttaaacctataggtcattgttccaagcaagaaaacagtcaaagcaataatcattacaacaca |
119 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| |
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| T |
11784367 |
caattctaagaaaaggacaattgtcattatccttaatgttaaacctataggtcattgttccaagcaagaaaacaatcaaagcaatgatcattacaacaca |
11784268 |
T |
|
| Q |
120 |
aggtattccaaatccaagaacccaactatagttatcttgtatataagtcaagattaaaagtgttgccgaggcacctgcaaccatagtaaaataccaccag |
219 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11784267 |
aggtattccaaatccaagaacccaactatagttatcttgtatataactcaagattaaaagtgttgccgaggcacctgcaaccatagtaaaataccaccag |
11784168 |
T |
|
| Q |
220 |
ttaaagaatgagcttctagctctatgctccttaggatg |
257 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11784167 |
ttaaagaatgagcttctagctctatgctccttaggatg |
11784130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 20 - 256
Target Start/End: Complemental strand, 11698180 - 11697944
Alignment:
| Q |
20 |
caattctaagaaaaggactattgtcattatccttaatgttaaacctataggtcattgttccaagcaagaaaacagtcaaagcaataatcattacaacaca |
119 |
Q |
| |
|
||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| || || ||||||| |||||| |
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| T |
11698180 |
caattctaagaaaaggactcttgtctttatccttaatgttaaacctataggtcattgttccaagcaagaaaacaatcaaggctatgatcattataacaca |
11698081 |
T |
|
| Q |
120 |
aggtattccaaatccaagaacccaactatagttatcttgtatataagtcaagattaaaagtgttgccgaggcacctgcaaccatagtaaaataccaccag |
219 |
Q |
| |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| |
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| T |
11698080 |
agggattccaaatccaagaacccaactatagttatcttgtatataagtcaagatcgaaagtgttgccgcggcacctgcaaccatagtaaaataccaccaa |
11697981 |
T |
|
| Q |
220 |
ttaaagaatgagcttctagctctatgctccttaggat |
256 |
Q |
| |
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||||||||||||||||||||| | ||||||||||||| |
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| T |
11697980 |
ttaaagaatgagcttctagctttgtgctccttaggat |
11697944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 20 - 257
Target Start/End: Complemental strand, 11788198 - 11787961
Alignment:
| Q |
20 |
caattctaagaaaaggactattgtcattatccttaatgttaaacctataggtcattgttccaagcaagaaaacagtcaaagcaataatcattacaacaca |
119 |
Q |
| |
|
||||||||||||| ||||| |||| |||||| || |||||||||||||| || || ||||||| |||||||||| |||||||||| ||||| |||||||| |
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| T |
11788198 |
caattctaagaaagggactcttgttattatcattgatgttaaacctatatgtgatagttccaatcaagaaaacaatcaaagcaatgatcataacaacaca |
11788099 |
T |
|
| Q |
120 |
aggtattccaaatccaagaacccaactatagttatcttgtatataagtcaagattaaaagtgttgccgaggcacctgcaaccatagtaaaataccaccag |
219 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
11788098 |
aggtattccaaatccaacaacccaactatagttatcttgtatataactcaagattaaaagtgttgccgaggcacctgcaaccattgtaaaataccaccaa |
11787999 |
T |
|
| Q |
220 |
ttaaagaatgagcttctagctctatgctccttaggatg |
257 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| |
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| T |
11787998 |
ttaaagaatgagcttctagctctatgttccttaggatg |
11787961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 20 - 257
Target Start/End: Complemental strand, 11800365 - 11800128
Alignment:
| Q |
20 |
caattctaagaaaaggactattgtcattatccttaatgttaaacctataggtcattgttccaagcaagaaaacagtcaaagcaataatcattacaacaca |
119 |
Q |
| |
|
||||||||||||| ||||| |||| |||||| || |||||||||||||| || || ||||||| |||||||||| |||||||||| ||||| |||||||| |
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| T |
11800365 |
caattctaagaaagggactcttgttattatcattgatgttaaacctatatgtgatagttccaatcaagaaaacaatcaaagcaatgatcataacaacaca |
11800266 |
T |
|
| Q |
120 |
aggtattccaaatccaagaacccaactatagttatcttgtatataagtcaagattaaaagtgttgccgaggcacctgcaaccatagtaaaataccaccag |
219 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
11800265 |
aggtattccaaatccaacaacccaactatagttatcttgtatataactcaagattaaaagtgttgccgaggcacctgcaaccattgtaaaataccaccaa |
11800166 |
T |
|
| Q |
220 |
ttaaagaatgagcttctagctctatgctccttaggatg |
257 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| |
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|
| T |
11800165 |
ttaaagaatgagcttctagctctatgttccttaggatg |
11800128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 20 - 257
Target Start/End: Complemental strand, 11676665 - 11676428
Alignment:
| Q |
20 |
caattctaagaaaaggactattgtcattatccttaatgttaaacctataggtcattgttccaagcaagaaaacagtcaaagcaataatcattacaacaca |
119 |
Q |
| |
|
||||||||||||| ||||| |||||||||||||||||| |||||||||| ||| ||||||||||| | |||||| |||||||||| |||||||||||||| |
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|
| T |
11676665 |
caattctaagaaagggactcttgtcattatccttaatgctaaacctatatgtccttgttccaagccaaaaaacaatcaaagcaatgatcattacaacaca |
11676566 |
T |
|
| Q |
120 |
aggtattccaaatccaagaacccaactatagttatcttgtatataagtcaagattaaaagtgttgccgaggcacctgcaaccatagtaaaataccaccag |
219 |
Q |
| |
|
||| |||||||||||||||||||||||| ||||||||||||||| |||||||| |||| ||| | | |||||||| |||||||||||||||||| |
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|
| T |
11676565 |
agggattccaaatccaagaacccaactaatgttatcttgtatatagttcaagattgtaagtattgatgtgcaacctgcaatcatagtaaaataccaccaa |
11676466 |
T |
|
| Q |
220 |
ttaaagaatgagcttctagctctatgctccttaggatg |
257 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||| |
|
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| T |
11676465 |
ttaaagaaagagcttctagctctatgctccttaggatg |
11676428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 20 - 257
Target Start/End: Complemental strand, 11684944 - 11684707
Alignment:
| Q |
20 |
caattctaagaaaaggactattgtcattatccttaatgttaaacctataggtcattgttccaagcaagaaaacagtcaaagcaataatcattacaacaca |
119 |
Q |
| |
|
||||||||||||| ||||| |||||||||||||||||| |||||||||| ||| ||||||||||| | |||||| |||||||||| |||||||||||||| |
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|
| T |
11684944 |
caattctaagaaagggactcttgtcattatccttaatgctaaacctatatgtccttgttccaagccaaaaaacaatcaaagcaatgatcattacaacaca |
11684845 |
T |
|
| Q |
120 |
aggtattccaaatccaagaacccaactatagttatcttgtatataagtcaagattaaaagtgttgccgaggcacctgcaaccatagtaaaataccaccag |
219 |
Q |
| |
|
||| |||||||||||||||||||||||| ||||||||||||||| |||||||| |||| ||| | | |||||||| |||||||||||||||||| |
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|
| T |
11684844 |
agggattccaaatccaagaacccaactaatgttatcttgtatatagttcaagattgtaagtattgatgtgcaacctgcaatcatagtaaaataccaccaa |
11684745 |
T |
|
| Q |
220 |
ttaaagaatgagcttctagctctatgctccttaggatg |
257 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
11684744 |
ttaaagaaagagcttctagctctatgctccttaggatg |
11684707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 20 - 240
Target Start/End: Complemental strand, 11707888 - 11707668
Alignment:
| Q |
20 |
caattctaagaaaaggactattgtcattatccttaatgttaaacctataggtcattgttccaagcaagaaaacagtcaaagcaataatcattacaacaca |
119 |
Q |
| |
|
||||||||| ||| ||||| ||||||||| ||||||||||||||||||| ||| ||||||||||||| |||||| ||||||| || |||||||||||||| |
|
|
| T |
11707888 |
caattctaataaagggactcttgtcattaaccttaatgttaaacctatatgtccttgttccaagcaaaaaaacaatcaaagcgatgatcattacaacaca |
11707789 |
T |
|
| Q |
120 |
aggtattccaaatccaagaacccaactatagttatcttgtatataagtcaagattaaaagtgttgccgaggcacctgcaaccatagtaaaataccaccag |
219 |
Q |
| |
|
||| |||||||||||||||||||||||| ||||||||||||||| ||||||| ||||||||| | | |||||||| |||||||||||||||||| |
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|
| T |
11707788 |
agggattccaaatccaagaacccaactaatgttatcttgtatatagttcaagatcgtaagtgttgctgtgcaacctgcaatcatagtaaaataccaccaa |
11707689 |
T |
|
| Q |
220 |
ttaaagaatgagcttctagct |
240 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
11707688 |
ttaaagaatgagcttctagct |
11707668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0294 (Bit Score: 153; Significance: 4e-81; HSPs: 1)
Name: scaffold0294
Description:
Target: scaffold0294; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 22 - 250
Target Start/End: Complemental strand, 19950 - 19722
Alignment:
| Q |
22 |
attctaagaaaaggactattgtcattatccttaatgttaaacctataggtcattgttccaagcaagaaaacagtcaaagcaataatcattacaacacaag |
121 |
Q |
| |
|
||||||||||||||||| || | |||||||||||||||||||||||| ||| ||||||| |||||||||| | |||| ||||| ||||||| |||||||| |
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|
| T |
19950 |
attctaagaaaaggactcttattattatccttaatgttaaacctatatgtccttgttccgagcaagaaaataatcaaggcaatgatcattataacacaag |
19851 |
T |
|
| Q |
122 |
gtattccaaatccaagaacccaactatagttatcttgtatataagtcaagattaaaagtgttgccgaggcacctgcaaccatagtaaaataccaccagtt |
221 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||| ||| |||||||||||||||||||||||||| || |
|
|
| T |
19850 |
gtattccaaatccaagaacccagctatagttatcttgaatataagtcaagatcggaagtgttgccgtggcccctgcaaccatagtaaaataccaccaatt |
19751 |
T |
|
| Q |
222 |
aaagaatgagcttctagctctatgctcct |
250 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
19750 |
aaagaatgagcttctagctctatgctcct |
19722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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