View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6694_low_1 (Length: 747)
Name: NF6694_low_1
Description: NF6694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6694_low_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 469; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 1 - 469
Target Start/End: Original strand, 52582975 - 52583443
Alignment:
| Q |
1 |
catttcattaataagacaagaaaatgacataacataaaaacaaaaacagaattttgatataagcttacggatgaagaaagtgctcaaagagccaagcacg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52582975 |
catttcattaataagacaagaaaatgacataacataaaaacaaaaacagaattttgatataagcttacggatgaagaaagtgctcaaagagccaagcacg |
52583074 |
T |
|
| Q |
101 |
aagaattgctacagatgtttcaggtaaccctctaataggtctccaaacttgtcgttggttttgaatgactccaagttgttggagagacattctagtctgt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52583075 |
aagaattgctacagatgtttcaggtaaccctctaataggtctccaaacttgtcgttggttttgaatgactccaagttgttggagagacattctagtctgt |
52583174 |
T |
|
| Q |
201 |
ctattattatctctctcaaataagctcagttgagacaatccactattaattttaggtacatcctgaaacagttttcttttctcagcatttatttgggaca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52583175 |
ctattattatctctctcaaataagctcagttgagacaatccactattaattttaggtacatcctgaaacagttttcttttctcagcatttatttgggaca |
52583274 |
T |
|
| Q |
301 |
ttatggcatctcttaagctacaaaaatgcctagacattgcttgaagtgccagagcagtgtaacactttgcagctcccaaacctgctatcatttcaaaaga |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52583275 |
ttatggcatctcttaagctacaaaaatgcctagacattgcttgaagtgccagagcagtgtaacactttgcagctcccaaacctgctatcatttcaaaaga |
52583374 |
T |
|
| Q |
401 |
tgatactacttcttccatttgatggtagtacttctcatatctaccctcaacctgaaaattaagcacaac |
469 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52583375 |
tgatactacttcttccatttgatggtagtacttctcatatctaccctcaacctgaaaattaagcacaac |
52583443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 476 - 739
Target Start/End: Original strand, 52583650 - 52583930
Alignment:
| Q |
476 |
atagaaatagcttataccatgtctataaattctcaaagatagcttatgaaaaaatttatatagttcataccaaaacaatttgatttttgttttaaaaata |
575 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52583650 |
atagaaatagcttataccatgtctataaattctcaaagatagcttatgaaaacatttatatagttcataccaaaacaatttgatttttgttttaaaaata |
52583749 |
T |
|
| Q |
576 |
atttatacataaacacttatttgataaactctagcactta------------attcgaatactactcaagtatgatgcaattttctttattagtactagt |
663 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52583750 |
atttatacataaacacttatttgataaactctagcacttaattaagctttttattcgaatactactcaagtatgatgcaattttctttattagtactagt |
52583849 |
T |
|
| Q |
664 |
gaacataaaatcag-----gaagagaagaccaaccaacctcatccaacaatgaaatgagctttgcaattttgacttgatgt |
739 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52583850 |
gaacataaaatcaggaagagaagagaagaccaaccaacctcatccaacaatgaaatgagctttgcaattttgacttgatgt |
52583930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 560 - 602
Target Start/End: Complemental strand, 38033934 - 38033892
Alignment:
| Q |
560 |
ttttgttttaaaaataatttatacataaacacttatttgataa |
602 |
Q |
| |
|
||||||| || |||||| ||||||||||||||||||||||||| |
|
|
| T |
38033934 |
ttttgttatataaataacttatacataaacacttatttgataa |
38033892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 560 - 602
Target Start/End: Complemental strand, 43133932 - 43133890
Alignment:
| Q |
560 |
ttttgttttaaaaataatttatacataaacacttatttgataa |
602 |
Q |
| |
|
|||||||||| |||||||||||||||||| |||||| |||||| |
|
|
| T |
43133932 |
ttttgttttagaaataatttatacataaatacttatgtgataa |
43133890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 133
Target Start/End: Complemental strand, 43242984 - 43242935
Alignment:
| Q |
84 |
tcaaagagccaagcacgaagaattgctacagatgtttcaggtaaccctct |
133 |
Q |
| |
|
|||||||||||||||||||||| | ||||||| |||||||||| ||||| |
|
|
| T |
43242984 |
tcaaagagccaagcacgaagaacagatacagatctttcaggtaatcctct |
43242935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University