View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6694_low_11 (Length: 319)

Name: NF6694_low_11
Description: NF6694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6694_low_11
NF6694_low_11
[»] chr7 (2 HSPs)
chr7 (35-297)||(9453839-9454087)
chr7 (1-34)||(31109839-31109872)
[»] chr2 (2 HSPs)
chr2 (1-37)||(39812245-39812281)
chr2 (1-39)||(32246572-32246612)
[»] scaffold0127 (1 HSPs)
scaffold0127 (1-34)||(34206-34239)
[»] chr5 (1 HSPs)
chr5 (1-34)||(15044484-15044517)
[»] chr4 (2 HSPs)
chr4 (1-34)||(5732458-5732491)
chr4 (1-39)||(3813811-3813851)
[»] chr3 (1 HSPs)
chr3 (1-34)||(18656228-18656261)
[»] chr1 (2 HSPs)
chr1 (1-34)||(41386543-41386576)
chr1 (1-34)||(41398032-41398065)
[»] chr8 (2 HSPs)
chr8 (2-34)||(25328536-25328568)
chr8 (1-36)||(39785081-39785116)


Alignment Details
Target: chr7 (Bit Score: 158; Significance: 5e-84; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 35 - 297
Target Start/End: Complemental strand, 9454087 - 9453839
Alignment:
Q  35 cttatcaacgacatcaatgtgaggccgcatgatctgatatgtaacattctcaagtacaaaatggaaagaagtgttttccttattaagttgtgtttctcgt 134  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||| ||||   |||||||||||||||||||||||||||||    
T  9454087 cttatcaacgacatcaatgtgaggccgcacgatctgatatgtaacattctcgagtgcaaaatgaaaag---tgttttccttattaagttgtgtttctcgt 9453991  T
Q  135 acctcatcttctgcatcattattttggtgctacttttgtggctgccggaacagcagctgagttaatttgtcgttgggcctgctgttcatgtgttgttgtc 234  Q
    ||||||| |||||          |||  |||||| ||||||||||||||||||||||||||||||| ||| ||||||||||||| |||||||||||||||    
T  9453990 acctcattttctg----------ttgtggctactgttgtggctgccggaacagcagctgagttaatctgttgttgggcctgctgctcatgtgttgttgtc 9453901  T
Q  235 gagtgttctgtaacattagaggtgcccatgtgacctatgtgctttttccgccactgtttcaac 297  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||    
T  9453900 gagtgttctgtaacattggaggtgcccatgtgacctatgtgctttttccgcca-tgtttcaac 9453839  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 31109839 - 31109872
Alignment:
Q  1 gtgtgaaggtttctttggaaccggattcacaaca 34  Q
    ||||||||||||||||||||||||||||||||||    
T  31109839 gtgtgaaggtttctttggaaccggattcacaaca 31109872  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 39812245 - 39812281
Alignment:
Q  1 gtgtgaaggtttctttggaaccggattcacaacactt 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  39812245 gtgtgaaggtttctttggaaccggattcacaacactt 39812281  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 32246612 - 32246572
Alignment:
Q  1 gtgtgaaggtttctttg--gaaccggattcacaacacttat 39  Q
    |||||||||||||||||  ||||||||||||||||||||||    
T  32246612 gtgtgaaggtttctttgtagaaccggattcacaacacttat 32246572  T

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Target: scaffold0127 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 34206 - 34239
Alignment:
Q  1 gtgtgaaggtttctttggaaccggattcacaaca 34  Q
    ||||||||||||||||||||||||||||||||||    
T  34206 gtgtgaaggtttctttggaaccggattcacaaca 34239  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 15044517 - 15044484
Alignment:
Q  1 gtgtgaaggtttctttggaaccggattcacaaca 34  Q
    ||||||||||||||||||||||||||||||||||    
T  15044517 gtgtgaaggtttctttggaaccggattcacaaca 15044484  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 5732491 - 5732458
Alignment:
Q  1 gtgtgaaggtttctttggaaccggattcacaaca 34  Q
    ||||||||||||||||||||||||||||||||||    
T  5732491 gtgtgaaggtttctttggaaccggattcacaaca 5732458  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 3813851 - 3813811
Alignment:
Q  1 gtgtgaaggtttctttg--gaaccggattcacaacacttat 39  Q
    |||||||||||||||||  ||||||||||||||||||||||    
T  3813851 gtgtgaaggtttctttgtagaaccggattcacaacacttat 3813811  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 18656261 - 18656228
Alignment:
Q  1 gtgtgaaggtttctttggaaccggattcacaaca 34  Q
    ||||||||||||||||||||||||||||||||||    
T  18656261 gtgtgaaggtttctttggaaccggattcacaaca 18656228  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 41386576 - 41386543
Alignment:
Q  1 gtgtgaaggtttctttggaaccggattcacaaca 34  Q
    ||||||||||||||||||||||||||||||||||    
T  41386576 gtgtgaaggtttctttggaaccggattcacaaca 41386543  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 41398065 - 41398032
Alignment:
Q  1 gtgtgaaggtttctttggaaccggattcacaaca 34  Q
    ||||||||||||||||||||||||||||||||||    
T  41398065 gtgtgaaggtttctttggaaccggattcacaaca 41398032  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 34
Target Start/End: Original strand, 25328536 - 25328568
Alignment:
Q  2 tgtgaaggtttctttggaaccggattcacaaca 34  Q
    |||||||||||||||||||||||||||||||||    
T  25328536 tgtgaaggtttctttggaaccggattcacaaca 25328568  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 39785081 - 39785116
Alignment:
Q  1 gtgtgaaggtttctttggaaccggattcacaacact 36  Q
    |||||||||||||||||||||| |||||||||||||    
T  39785081 gtgtgaaggtttctttggaaccagattcacaacact 39785116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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