View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6694_low_12 (Length: 313)
Name: NF6694_low_12
Description: NF6694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6694_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 141; Significance: 6e-74; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 114 - 290
Target Start/End: Original strand, 46655076 - 46655252
Alignment:
| Q |
114 |
gtatcaaatcgttctactgtggtttgtgctcaactcacagttcaacaatctgccgtgaagctcattctcagtgacatggttcaggcaaaggcactgatgt |
213 |
Q |
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| T |
46655076 |
gtatcaaatcgttctactgtggtttgtgctcaactcagagttcaacaatctgtcgtggagctcattctcagtgacatggttcaggcaaaggcactgatgt |
46655175 |
T |
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| Q |
214 |
agtggaggttaggcttgaccacgtcacagattttcaacctccccgtgaccttcaaaccatcctgatcaccaataaac |
290 |
Q |
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| T |
46655176 |
agtggaggttaagcttgaccacataacaaattttcaacctcgccgtgaccttcaaaccatcctgatcactaataaac |
46655252 |
T |
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Target: chr7; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 56 - 138
Target Start/End: Complemental strand, 47110452 - 47110369
Alignment:
| Q |
56 |
taatttatttgtgggcgatacaaatcttct-tttcagacatatggaaagttatggatcagtatcaaatcgttctactgtggttt |
138 |
Q |
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|||||||||||||| |||||||||||| | ||| |||||| |||||||||||||||||||||||||||||||| ||||||||| |
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| T |
47110452 |
taatttatttgtggtcgatacaaatctcttctttaagacatgtggaaagttatggatcagtatcaaatcgttctgctgtggttt |
47110369 |
T |
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