View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6694_low_17 (Length: 272)
Name: NF6694_low_17
Description: NF6694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6694_low_17 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 9 - 272
Target Start/End: Original strand, 27294445 - 27294708
Alignment:
| Q |
9 |
gatggacatcagctagtataaatagacgtgtttagttcatttgctgtaaaatacaacaaagaactacgatacggtggatatgaacaccaagcgttcgctt |
108 |
Q |
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| T |
27294445 |
gatgcacataagctagtataaatagacgtgtttagttaatttgctgtaaaatacaacaaagaactacgatacggtggatatgaacaccaagcgttcgctt |
27294544 |
T |
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| Q |
109 |
tgaacttgatcataatgcccagataaatgatgtgtttctattggcagggcatcataatcgagtgtaaaataacttcttgaaacatcttacctttcttcat |
208 |
Q |
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| T |
27294545 |
tgaacttgatcataatgcccagataaatgacgtatttctattggcagggcatcataatcgagtgtaaaataacttcttgaaacatcttacctttcttcat |
27294644 |
T |
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| Q |
209 |
cactcatcttatattatttaccattttctcttgtatcatttgaaggtgagaaaaacacaagaag |
272 |
Q |
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| T |
27294645 |
cactcatcttatatcatttaccattttctcttgtatcagttgaaggtgagaaaaacacaagaag |
27294708 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 72
Target Start/End: Complemental strand, 32475142 - 32475094
Alignment:
| Q |
24 |
gtataaatagacgtgtttagttcatttgctgtaaaatacaacaaagaac |
72 |
Q |
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| T |
32475142 |
gtataaatagacgtgtttggttcatttaatgtaaaacacaacaaagaac |
32475094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 74
Target Start/End: Original strand, 13909423 - 13909471
Alignment:
| Q |
26 |
ataaatagacgtgtttagttcatttgctgtaaaatacaacaaagaacta |
74 |
Q |
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| T |
13909423 |
ataaatagacgtgttcggttcatttgttgtaaaacacaacaaagaacta |
13909471 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 74
Target Start/End: Complemental strand, 25880145 - 25880095
Alignment:
| Q |
24 |
gtataaatagacgtgtttagttcatttgctgtaaaatacaacaaagaacta |
74 |
Q |
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||||||| | || ||||| ||||||||| |||||||||||||||||||||| |
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| T |
25880145 |
gtataaagatacatgtttggttcatttgttgtaaaatacaacaaagaacta |
25880095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 74
Target Start/End: Complemental strand, 15247902 - 15247853
Alignment:
| Q |
25 |
tataaatagacgtgtttagttcatttgctgtaaaatacaacaaagaacta |
74 |
Q |
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||||| ||||| ||||| ||||||||||||||||||||| |||| ||||| |
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| T |
15247902 |
tataagtagacatgtttggttcatttgctgtaaaatacagcaaaaaacta |
15247853 |
T |
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