View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6694_low_19 (Length: 259)
Name: NF6694_low_19
Description: NF6694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6694_low_19 |
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Alignment Details
Target: chr6 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 25 - 127
Target Start/End: Complemental strand, 34836242 - 34836140
Alignment:
| Q |
25 |
tgttatgtgtgtaagattgaaaaatatcaaactaaagggctacgtaatagccgacaatttcacatattcacgctgtcaagacattgttggattgagatct |
124 |
Q |
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| T |
34836242 |
tgttatgtgtgtaagattgaaaaatatcaaactaaagggctacgtaatagctgacaatttcacatattcatgctgtcaagacattgttggattgagatct |
34836143 |
T |
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| Q |
125 |
gaa |
127 |
Q |
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||| |
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| T |
34836142 |
gaa |
34836140 |
T |
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Target: chr6; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 161 - 256
Target Start/End: Complemental strand, 34836106 - 34836011
Alignment:
| Q |
161 |
gaatctaaaaatacagagattgatatgcaaatggttttaaatattttgattcaatgtattgattgcgtcgcaatccgaatacatatattttgattg |
256 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |
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| T |
34836106 |
gaatctaaaaatacggagattgatatgcaaatggttttaaatattttgattcaatgtattgattgcgtcccaatccgaatacatatatattgattg |
34836011 |
T |
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