View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6694_low_3 (Length: 612)
Name: NF6694_low_3
Description: NF6694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6694_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 389; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 1 - 458
Target Start/End: Complemental strand, 12560500 - 12560041
Alignment:
| Q |
1 |
aattgttgtttatgttgtatggtgtattgttggtggtgaccgtcgttgtaccacttggtaaaccattattagtggcggtggctagggtggcggaggtgga |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12560500 |
aattgttgtttatgttgtatggtgtattgttggtggtgaccgtcgttgtaccacttggtaaaccattattagtggcggtggctagggtggcggaggtgga |
12560401 |
T |
|
| Q |
101 |
tgcggcagcttggatgcgctccactagccttggcatccaaaggtatcgcatagcatctttaaattgcttgctgtttacgtcacatttgagttgtttggca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12560400 |
tgcggcagcttggatgcgctccactagccttggcatccaaaggtatcgcatagcatctttaaattgcttgctgtttacgtcacatttgagttgtttggca |
12560301 |
T |
|
| Q |
201 |
tgtttttggacacgggttctccaataattcttgatctcgttgtctgttcttcccggtaagtattgagcaattttggaccatctaatcgatcaatcaaata |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
12560300 |
tgtttttggacacgggttctccaataattcttgatctcgttgtctgttcttcccggtaagtattgagcaattttagaccatctaatcgatcaatcaaata |
12560201 |
T |
|
| Q |
301 |
attaattagacataataactnnnnnnnctactaaccaacattttgaaattagaaagattaaattaccaacataaactaaagaccg--nnnnnnnnntgaa |
398 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
12560200 |
attaattagacataataactaaaaaaactactaaccaacattttgaaattagaaagattaaattaccaacataaactaaagaccgaaaaaaaaaaatgaa |
12560101 |
T |
|
| Q |
399 |
aataatttctaatttctaatttcacatctctaatatttaacgacgaatttggaaagatga |
458 |
Q |
| |
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| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
12560100 |
actaatttctaatttctaatttcacgtctctaatatttaacgacgaatttggaaagatga |
12560041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 493 - 596
Target Start/End: Complemental strand, 12559984 - 12559881
Alignment:
| Q |
493 |
actccataatttaactattctaattgtaacaaaataatataaactctgatgtgtatgtttttatgcatgtatcaattgcttaccggtttccccaacgact |
592 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12559984 |
actccataatttaactattctaattataacaaaataatataaactctgatgtgtatgtttttatgcatgtatcaattgcttaccggtttccccaacgact |
12559885 |
T |
|
| Q |
593 |
atga |
596 |
Q |
| |
|
|||| |
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|
| T |
12559884 |
atga |
12559881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 70; Significance: 3e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 102 - 283
Target Start/End: Original strand, 50777386 - 50777567
Alignment:
| Q |
102 |
gcggcagcttggatgcgctccactagccttggcatccaaaggtatcgcatagcatctttaaattgcttgctgtttacgtcacatttgagttgtttggcat |
201 |
Q |
| |
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||||| ||||| || || || ||||||||||||||||||||||| ||||| | || || ||||||||||| || ||||| |||||||||||||||||| |
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| T |
50777386 |
gcggcggcttgaatacgttcgactagccttggcatccaaaggtagcgcatggtgtccttgaattgcttgctattcacgtcgcatttgagttgtttggcaa |
50777485 |
T |
|
| Q |
202 |
gtttttggacacgggttctccaataattcttgatctcgttgtctgttcttcccggtaagtattgagcaattttggaccatct |
283 |
Q |
| |
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| ||||| ||||| |||||||||||||| || || || ||||| |||||||| ||||| ||||| || ||||| |||||||| |
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| T |
50777486 |
gcttttgaacacgagttctccaataattttttatttcattgtccgttcttcctggtaaatattgggctattttcgaccatct |
50777567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 216 - 280
Target Start/End: Original strand, 49848559 - 49848623
Alignment:
| Q |
216 |
gttctccaataattcttgatctcgttgtctgttcttcccggtaagtattgagcaattttggacca |
280 |
Q |
| |
|
||||||||||| ||||| ||||| || ||||||||||| ||||| | ||||||||||| ||||| |
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| T |
49848559 |
gttctccaatagttctttatctcattatctgttcttcctggtaaatgctgagcaatttttgacca |
49848623 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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