View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6694_low_4 (Length: 441)
Name: NF6694_low_4
Description: NF6694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6694_low_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 412; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 19 - 438
Target Start/End: Original strand, 38927247 - 38927666
Alignment:
| Q |
19 |
actcatcactccacatccaatattaagatgaatcaaatggatttttgtttgtgatgcaacatgttccactatagcttgtacaccagcaaattgcattact |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38927247 |
actcatcactccacatccaatattaagatgaatcaaatggatttttgtttgtgatgcaacatgttccactatagcttgtacaccagcaaattgcattact |
38927346 |
T |
|
| Q |
119 |
tgattgaaaggaattttttgatgacatttaactactatgttagtatctaattccattttatcaatcaattccgtctccttgtttctctcatttgatctat |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38927347 |
tgattgaaaggaattttttgatgacatttaactactatgttagtatctaattccattttatcaatcaattccgtctccttgtttctctcatttgatctat |
38927446 |
T |
|
| Q |
219 |
gcagtttcatctttcctcgtccggtttctctgttgattctctcttgaagtgcttgagagaaatggaaaagaagtctctgaactgtgcttccaatatttcc |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38927447 |
gcagtttcatctttcctcgtccggtttctctgttgattctctcttgaagggcttgagagaaatggaaaagaagtctctgaactgtgcttccaatatttcc |
38927546 |
T |
|
| Q |
319 |
actttcattcatgagatgaaaatgtgaaagtaacatgtttgcacgttcaaattgttgacaacctactctctcagctgctgctagaacaaactgagctagt |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38927547 |
actttcattcatgagatgaaaatgtgaaagtaacatgtttgcacgttcaaattgttgacaacctactctctcagctgctgctagaacaaactgagctagt |
38927646 |
T |
|
| Q |
419 |
tcaacttgtttatattcttc |
438 |
Q |
| |
|
||||||||||||| |||||| |
|
|
| T |
38927647 |
tcaacttgtttattttcttc |
38927666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 76 - 144
Target Start/End: Original strand, 44837828 - 44837896
Alignment:
| Q |
76 |
aacatgttccactatagcttgtacaccagcaaattgcattacttgattgaaaggaattttttgatgaca |
144 |
Q |
| |
|
||||||||| ||||||||||||| |||| ||||||||| |||||||| ||||||| |||||||||||| |
|
|
| T |
44837828 |
aacatgttcaactatagcttgtattccagtaaattgcataacttgattaaaaggaagtttttgatgaca |
44837896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University