View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6694_low_5 (Length: 441)

Name: NF6694_low_5
Description: NF6694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6694_low_5
NF6694_low_5
[»] chr8 (1 HSPs)
chr8 (10-427)||(42759627-42760044)
[»] chr5 (1 HSPs)
chr5 (23-427)||(1401804-1402208)
[»] chr4 (2 HSPs)
chr4 (370-427)||(37341958-37342015)
chr4 (356-398)||(56478858-56478900)
[»] chr6 (1 HSPs)
chr6 (356-427)||(445546-445617)
[»] chr7 (3 HSPs)
chr7 (370-427)||(23487048-23487105)
chr7 (370-425)||(23485539-23485594)
chr7 (356-400)||(11646513-11646557)
[»] chr2 (2 HSPs)
chr2 (370-427)||(4814660-4814717)
chr2 (370-427)||(25890428-25890485)
[»] chr1 (1 HSPs)
chr1 (356-398)||(23261040-23261082)
[»] chr3 (2 HSPs)
chr3 (370-427)||(50717281-50717338)
chr3 (370-427)||(50795510-50795567)


Alignment Details
Target: chr8 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 10 - 427
Target Start/End: Original strand, 42759627 - 42760044
Alignment:
Q  10 cgaccatcaaattaactccagcaaatcacagctccatgcacaccaagtttaactgctaagattgaagaaagtttagaaacagatgagtaaaatgcaaaca 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42759627 cgaccatcaaattaactccagcaaatcacagctccatgcacaccaagtttaactgctaagattgaagaaagtttagaaacagatgagtaaaatgcaaaca 42759726  T
Q  110 gtcaggcatgtatatatatacagagggaataaggtgcatgattgtgttaatatgcatgggaaaaagaggattacagatggatagatgtgttggttttcaa 209  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42759727 gtcaggcatgtatatatatacagagggaataaagtgcatgattgtgttaatatgcatgggaaaaagaggattacagatggatagatgtgttggttttcaa 42759826  T
Q  210 aacgaaagttcaatagccattaattaatgttgttctctattcaagcaaggggaattttgaaatacaaatacaaactaaatgaaaaactaaaggtttacat 309  Q
    ||||||||||||||| || |||| ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  42759827 aacgaaagttcaataacccttaactaatgttgtgctctattcaagcaaggggaatttcgaaatacaaatacaaactaaatgaaaaactaaaggtttacat 42759926  T
Q  310 aaaacacggtaaactaagcagaccacaataattgcattattttgaattcaaacagccaaatactttggagccaaattattttagggttaacaaatgagca 409  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||    
T  42759927 aaaacaaggtaaactaagcagaccacaataattgcattattttgaattcaaacagccaaatactttggagccaaattattttagggctaacagattagca 42760026  T
Q  410 ttaattgctgctaatttg 427  Q
    ||||||||||||||||||    
T  42760027 ttaattgctgctaatttg 42760044  T

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Target: chr5 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 23 - 427
Target Start/End: Complemental strand, 1402208 - 1401804
Alignment:
Q  23 aactccagcaaatcacagctccatgcacaccaagtttaactgctaagattgaagaaagtttagaaacagatgagtaaaatgcaaacagtcaggcatgtat 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |    
T  1402208 aactccagcaaatcacagctccatgcacaccaagtttaactgctaagattgaagaaagtttagaaacagatgagtaaaacggaaacagtcaggcatgtgt 1402109  T
Q  123 atatatacagagggaataaggtgcatgattgtgttaatatgcatgggaaaaagaggattacagatggatagatgtgttggttttcaaaacgaaagttcaa 222  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  1402108 atatatacagagggaataaggtgcatgattgtgttaatatgcatgggaaaaagaggattacatatggatagatgtgttggttttcaaaacgaaagttcaa 1402009  T
Q  223 tagccattaattaatgttgttctctattcaagcaaggggaattttgaaatacaaatacaaactaaatgaaaaactaaaggtttacataaaacacggtaaa 322  Q
    ||||| || |||||||||||  | |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  1402008 tagcccttgattaatgttgtgttgtattcaagcaaggggaattttgaaatacaaatacaaactaaatggaaaactaaaggtttacataaaacacggtaaa 1401909  T
Q  323 ctaagcagaccacaataattgcattattttgaattcaaacagccaaatactttggagccaaattattttagggttaacaaatgagcattaattgctgcta 422  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||  || |||||||||||||||||    
T  1401908 ctaagcagaccacaataattgcattattttgaattcaaacagtcaaatactttggagccaaattattttaaggttaactcattagcattaattgctgcta 1401809  T
Q  423 atttg 427  Q
    |||||    
T  1401808 atttg 1401804  T

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Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 370 - 427
Target Start/End: Original strand, 37341958 - 37342015
Alignment:
Q  370 tactttggagccaaattattttagggttaacaaatgagcattaattgctgctaatttg 427  Q
    ||||||| |||||||||||||||||||||||  || ||||||||||||||||||||||    
T  37341958 tactttgtagccaaattattttagggttaacttattagcattaattgctgctaatttg 37342015  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 356 - 398
Target Start/End: Original strand, 56478858 - 56478900
Alignment:
Q  356 ttcaaacagccaaatactttggagccaaattattttagggtta 398  Q
    ||||||||||||||||||||||||||||||| ||| |||||||    
T  56478858 ttcaaacagccaaatactttggagccaaattttttaagggtta 56478900  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 356 - 427
Target Start/End: Original strand, 445546 - 445617
Alignment:
Q  356 ttcaaacagccaaatactttggagccaaattattttagggttaacaaatgagcattaattgctgctaatttg 427  Q
    ||||||||||||||||||||||||||||| | | |||||||||||   |  |||||||||||||||||||||    
T  445546 ttcaaacagccaaatactttggagccaaaatttcttagggttaactcgttggcattaattgctgctaatttg 445617  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 370 - 427
Target Start/End: Complemental strand, 23487105 - 23487048
Alignment:
Q  370 tactttggagccaaattattttagggttaacaaatgagcattaattgctgctaatttg 427  Q
    ||||||| ||||||||| |||||||||||||  || ||||||||||||||||||||||    
T  23487105 tactttgaagccaaatttttttagggttaacttattagcattaattgctgctaatttg 23487048  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 370 - 425
Target Start/End: Complemental strand, 23485594 - 23485539
Alignment:
Q  370 tactttggagccaaattattttagggttaacaaatgagcattaattgctgctaatt 425  Q
    ||||||| ||||||||| |||||||||||||  || ||||||||||||||||||||    
T  23485594 tactttgaagccaaatttttttagggttaacttattagcattaattgctgctaatt 23485539  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 356 - 400
Target Start/End: Original strand, 11646513 - 11646557
Alignment:
Q  356 ttcaaacagccaaatactttggagccaaattattttagggttaac 400  Q
    |||||||| ||||||||||||  || |||||||||||||||||||    
T  11646513 ttcaaacaaccaaatactttgaggcgaaattattttagggttaac 11646557  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 370 - 427
Target Start/End: Complemental strand, 4814717 - 4814660
Alignment:
Q  370 tactttggagccaaattattttagggttaacaaatgagcattaattgctgctaatttg 427  Q
    ||||||||||||||||| ||||||||||| |  || ||||||||||||||||||||||    
T  4814717 tactttggagccaaatttttttagggttagcttattagcattaattgctgctaatttg 4814660  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 370 - 427
Target Start/End: Original strand, 25890428 - 25890485
Alignment:
Q  370 tactttggagccaaattattttagggttaacaaatgagcattaattgctgctaatttg 427  Q
    ||||||| ||||||||| |||||||||||||  || ||||||||||||||||||||||    
T  25890428 tactttgtagccaaatttttttagggttaacttattagcattaattgctgctaatttg 25890485  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 356 - 398
Target Start/End: Complemental strand, 23261082 - 23261040
Alignment:
Q  356 ttcaaacagccaaatactttggagccaaattattttagggtta 398  Q
    ||||||||||||||||||||||||||||||| ||| |||||||    
T  23261082 ttcaaacagccaaatactttggagccaaattttttaagggtta 23261040  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 427
Target Start/End: Complemental strand, 50717338 - 50717281
Alignment:
Q  370 tactttggagccaaattattttagggttaacaaatgagcattaattgctgctaatttg 427  Q
    ||||||| ||||||||| ||||| |||||||  || |||||||||||||||| |||||    
T  50717338 tactttgtagccaaatttttttaaggttaacttattagcattaattgctgctgatttg 50717281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 427
Target Start/End: Original strand, 50795510 - 50795567
Alignment:
Q  370 tactttggagccaaattattttagggttaacaaatgagcattaattgctgctaatttg 427  Q
    ||||||| ||||||||| ||||| |||||||  || |||||||||||||||| |||||    
T  50795510 tactttgtagccaaatttttttaaggttaacttattagcattaattgctgctgatttg 50795567  T

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