View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6694_low_6 (Length: 435)
Name: NF6694_low_6
Description: NF6694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6694_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 13 - 428
Target Start/End: Complemental strand, 54127436 - 54127021
Alignment:
| Q |
13 |
catcagcaatgacacaattgcagccaacatgatgttcgacattgaaattgtggaacaccataaactgtgtggcagtagaagttgcagatttataggctgc |
112 |
Q |
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| T |
54127436 |
catcagcaatgacacaattgcagccaacatgatgttcgacattgaaattgtggaacaccataaactgtgtggcagtagaagttgcagatttataggctgc |
54127337 |
T |
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| Q |
113 |
acccagctctttctccatatatcagtgttatcatctccaggactagttcataaacagaatcctacttaattttgcatccgaaggtgactaacttataatg |
212 |
Q |
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| T |
54127336 |
acccagctctttctccatatatcagtgttatcatctccaggactagttcataaacagaatcctacttaattttgcatccgaaggtgactaacttataatg |
54127237 |
T |
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| Q |
213 |
gaagaacctttggagatctttgataataacagctttctcctttcaagttcatgatgtttcttaatgtaatctttaaagattttggccggaaaaaggagac |
312 |
Q |
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| T |
54127236 |
gaagaacctttggagatctttgataataacagctttctcctttcaagttcatgatgtttcttaatgtaatctttaaagattttggccggaaaaaggagac |
54127137 |
T |
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| Q |
313 |
ctggtttttaagcaatgtgaggtcgctacaattctccactatggttggtaaggaacactcgtatatttaaggaggtctctttacccttaaaataatatag |
412 |
Q |
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| T |
54127136 |
ctggtttttaagcaatgtgaggttgctacaattctccactatggttggtaaggaacgctcatatatttaaggaggtctctttacccttaaaataatatag |
54127037 |
T |
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| Q |
413 |
cattgtgttgatgtcc |
428 |
Q |
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| T |
54127036 |
cattgtgtttatgtcc |
54127021 |
T |
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