View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6694_low_9 (Length: 326)

Name: NF6694_low_9
Description: NF6694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6694_low_9
NF6694_low_9
[»] chr8 (18 HSPs)
chr8 (10-326)||(10014568-10014884)
chr8 (181-242)||(10014242-10014303)
chr8 (87-179)||(34254900-34254993)
chr8 (118-203)||(40220186-40220271)
chr8 (85-179)||(4733309-4733403)
chr8 (95-200)||(19492236-19492340)
chr8 (138-200)||(26268766-26268827)
chr8 (263-325)||(42435653-42435715)
chr8 (220-305)||(4743658-4743743)
chr8 (262-307)||(30143003-30143048)
chr8 (89-179)||(41365408-41365500)
chr8 (263-306)||(43036085-43036128)
chr8 (259-325)||(4731317-4731382)
chr8 (135-205)||(17849500-17849569)
chr8 (268-325)||(22975983-22976040)
chr8 (274-326)||(1746662-1746714)
chr8 (138-202)||(15949132-15949195)
chr8 (274-326)||(34256948-34257000)
[»] chr4 (14 HSPs)
chr4 (83-174)||(54882320-54882411)
chr4 (85-202)||(29055866-29055983)
chr4 (85-179)||(34570996-34571091)
chr4 (85-179)||(12740129-12740222)
chr4 (85-179)||(12748335-12748428)
chr4 (219-326)||(3909715-3909822)
chr4 (138-203)||(36770966-36771031)
chr4 (126-185)||(5137819-5137879)
chr4 (270-326)||(5370519-5370575)
chr4 (263-307)||(6655400-6655444)
chr4 (127-185)||(7124434-7124493)
chr4 (127-185)||(8395136-8395195)
chr4 (264-325)||(54882485-54882546)
chr4 (274-326)||(52095804-52095856)
[»] chr1 (13 HSPs)
chr1 (85-200)||(776751-776866)
chr1 (85-200)||(50167718-50167839)
chr1 (118-202)||(13547837-13547922)
chr1 (85-143)||(28221484-28221542)
chr1 (259-325)||(37033731-37033797)
chr1 (95-200)||(41360441-41360545)
chr1 (85-176)||(31658721-31658812)
chr1 (118-185)||(19753902-19753969)
chr1 (127-198)||(47703333-47703404)
chr1 (118-184)||(31928443-31928509)
chr1 (220-305)||(4553112-4553197)
chr1 (274-326)||(20762344-20762396)
chr1 (220-304)||(49917969-49918052)
[»] chr7 (14 HSPs)
chr7 (85-179)||(48491083-48491177)
chr7 (118-204)||(4509388-4509474)
chr7 (118-204)||(4511230-4511316)
chr7 (118-204)||(6431362-6431448)
chr7 (85-185)||(47674529-47674628)
chr7 (138-203)||(44011265-44011330)
chr7 (127-185)||(6592917-6592976)
chr7 (127-185)||(18390558-18390617)
chr7 (127-205)||(4175357-4175435)
chr7 (264-325)||(14070278-14070339)
chr7 (264-325)||(14380306-14380367)
chr7 (138-179)||(26214631-26214672)
chr7 (274-326)||(4178447-4178499)
chr7 (125-185)||(9189443-9189503)
[»] chr3 (22 HSPs)
chr3 (85-179)||(44331052-44331146)
chr3 (85-185)||(29812547-29812645)
chr3 (87-185)||(7763935-7764034)
chr3 (87-179)||(9634892-9634985)
chr3 (89-185)||(37407941-37408040)
chr3 (85-179)||(2075572-2075667)
chr3 (85-179)||(40734911-40735005)
chr3 (87-179)||(5258717-5258810)
chr3 (87-185)||(6718192-6718292)
chr3 (125-200)||(4386445-4386520)
chr3 (96-185)||(10057945-10058031)
chr3 (96-185)||(10060167-10060253)
chr3 (96-185)||(10062389-10062475)
chr3 (96-185)||(10064611-10064697)
chr3 (96-185)||(10066833-10066919)
chr3 (87-185)||(23198526-23198626)
chr3 (127-185)||(4599103-4599162)
chr3 (127-185)||(10210923-10210982)
chr3 (264-323)||(46173179-46173238)
chr3 (118-192)||(43402588-43402661)
chr3 (263-325)||(49200113-49200175)
chr3 (274-326)||(9636572-9636624)
[»] chr5 (8 HSPs)
chr5 (85-179)||(13487702-13487796)
chr5 (87-185)||(29722055-29722156)
chr5 (85-181)||(42426825-42426921)
chr5 (87-185)||(16408981-16409081)
chr5 (138-192)||(535459-535513)
chr5 (127-185)||(16546161-16546220)
chr5 (127-185)||(40381834-40381893)
chr5 (181-276)||(3076113-3076210)
[»] chr6 (11 HSPs)
chr6 (87-179)||(5406750-5406843)
chr6 (87-179)||(5411075-5411168)
chr6 (87-179)||(5407518-5407611)
chr6 (87-179)||(5411843-5411936)
chr6 (87-185)||(16554358-16554458)
chr6 (87-185)||(16630914-16631014)
chr6 (87-185)||(16652620-16652720)
chr6 (10-50)||(3050865-3050905)
chr6 (96-185)||(34166584-34166670)
chr6 (160-200)||(24543165-24543205)
chr6 (264-325)||(21593111-21593172)
[»] scaffold0491 (1 HSPs)
scaffold0491 (87-185)||(9304-9404)
[»] scaffold0066 (1 HSPs)
scaffold0066 (225-325)||(20859-20959)
[»] scaffold0176 (1 HSPs)
scaffold0176 (252-326)||(17707-17781)
[»] chr2 (5 HSPs)
chr2 (220-325)||(36318453-36318559)
chr2 (122-198)||(31056675-31056751)
chr2 (10-53)||(34907585-34907627)
chr2 (259-305)||(17057718-17057764)
chr2 (259-305)||(17085701-17085747)
[»] scaffold1908 (1 HSPs)
scaffold1908 (85-158)||(1041-1114)
[»] scaffold0286 (1 HSPs)
scaffold0286 (263-307)||(11002-11046)


Alignment Details
Target: chr8 (Bit Score: 309; Significance: 1e-174; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 10 - 326
Target Start/End: Original strand, 10014568 - 10014884
Alignment:
Q  10 acatcatcaagtgacaaaataaattatcccaacattttttaacatcaagtttgtaatatctcccgttcggtgtaactacttggtgtagttagatgcaagg 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10014568 acatcatcaagtgacaaaataaattatcccaacattttttaacatcaagtttgtaatatctcccgttcggtgtaactacttggtgtagttagatgcaagg 10014667  T
Q  110 gaaaagaaaaggagaatggtggttcattgttaaagtggcatcatcatcattttagagtcaaggtggagaaatgttgcaaagtgactcaaaaatgatttga 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10014668 gaaaagaaaaggagaatggtggttcattgttaaagtggcatcatcatcattttagagtcaaggtggagaaatgttgcaaagtgactcaaaaatgatttga 10014767  T
Q  210 gcatgttacaaatcatgacacgatttgtggaccatgacacaattttcctatgtcgtgagcatgtttttcagggtttccaatcgtgacacgtttttgggca 309  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  10014768 gcatgttacaaatcatgacacgatttgtggaccatgacacaattttcctatgtcgtgagcatgtttttcagggtttccaatcgtgacacgattttgggca 10014867  T
Q  310 atcattacacgattttt 326  Q
    ||||| |||||||||||    
T  10014868 atcatgacacgattttt 10014884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 181 - 242
Target Start/End: Original strand, 10014242 - 10014303
Alignment:
Q  181 tgttgcaaagtgactcaaaaatgatttgagcatgttacaaatcatgacacgatttgtggacc 242  Q
    |||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||    
T  10014242 tgttgcaaagtgactcaaaaatgatttgagcatgttgcaaatcgtgacacgatttgtggacc 10014303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 87 - 179
Target Start/End: Complemental strand, 34254993 - 34254900
Alignment:
Q  87 acttggtgtagttagatgcaagggaaaagaaaagg-agaatggtggttcattgttaaagtggcatcatcatcattttagagtcaaggtggagaa 179  Q
    ||||||||||||| ||||||||||||||||||||| ||| |||||||| || ||||||||| ||||||||||| |||  |||||||||||||||    
T  34254993 acttggtgtagttggatgcaagggaaaagaaaagggagattggtggttgatggttaaagtgacatcatcatcaatttgaagtcaaggtggagaa 34254900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 118 - 203
Target Start/End: Complemental strand, 40220271 - 40220186
Alignment:
Q  118 aaggagaatggtggttcattgttaaagtggcatcatcatcattttagagtcaaggtggagaaatgttgcaaagtgactcaaaaatg 203  Q
    |||||||||||||||| || |||||| | ||||||||||||||||||||||||||||||||| |||||  |  |||||||||||||    
T  40220271 aaggagaatggtggttgatggttaaattagcatcatcatcattttagagtcaaggtggagaattgttgagatatgactcaaaaatg 40220186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 85 - 179
Target Start/End: Original strand, 4733309 - 4733403
Alignment:
Q  85 ctacttggtgtagttagatgcaagggaaaagaaaaggagaatggtggttcattgttaaagtggcatcatcatcattttagagtcaaggtggagaa 179  Q
    ||||||||||||||| ||||  |||||||||||||||  | |||||||| |  ||||| ||||||||||||||| |||  || ||||||||||||    
T  4733309 ctacttggtgtagttggatgtcagggaaaagaaaagggaattggtggttgaaggttaatgtggcatcatcatcaatttgaagccaaggtggagaa 4733403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 95 - 200
Target Start/End: Complemental strand, 19492340 - 19492236
Alignment:
Q  95 tagttagatgcaagggaaaagaaaaggagaatggtggttcattgttaaagtggcatcatcatcattttagagtcaaggtggagaaatgttgcaaagtgac 194  Q
    ||||| ||||||||| | | ||| || |||||||||||| || |||||  || ||||| |||||  ||||||||||||||||||||||||| ||| ||||    
T  19492340 tagttggatgcaaggaatatgaagagaagaatggtggttgatggttaat-tgacatcaccatcaaattagagtcaaggtggagaaatgttgaaaattgac 19492242  T
Q  195 tcaaaa 200  Q
    ||||||    
T  19492241 tcaaaa 19492236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 138 - 200
Target Start/End: Complemental strand, 26268827 - 26268766
Alignment:
Q  138 gttaaagtggcatcatcatcattttagagtcaaggtggagaaatgttgcaaagtgactcaaaa 200  Q
    |||||| |||||||||||  | |||||||||||||||||||||||||| ||||| ||||||||    
T  26268827 gttaaattggcatcatcactaatttagagtcaaggtggagaaatgttg-aaagttactcaaaa 26268766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 263 - 325
Target Start/End: Complemental strand, 42435715 - 42435653
Alignment:
Q  263 cgtgagcatgtttttcagggtttccaatcgtgacacgtttttgggcaatcattacacgatttt 325  Q
    |||||||||||||| |||||| ||||||||||||||| ||||||| || | | ||||||||||    
T  42435715 cgtgagcatgttttgcagggtgtccaatcgtgacacgattttggggaaacgtgacacgatttt 42435653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 220 - 305
Target Start/End: Complemental strand, 4743743 - 4743658
Alignment:
Q  220 aatcatgacacgatttgtggaccatgacacaattttcctatgtcgtgagcatgtttttcagggtttccaatcgtgacacgtttttg 305  Q
    |||| |||||||||| ||| | |||| ||||||||  | ||| ||||||||||||||  ||||| ||||||||||||||| |||||    
T  4743743 aatcgtgacacgattagtgaagcatgtcacaatttcgcaatgccgtgagcatgttttgaagggtgtccaatcgtgacacgattttg 4743658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 262 - 307
Target Start/End: Original strand, 30143003 - 30143048
Alignment:
Q  262 tcgtgagcatgtttttcagggtttccaatcgtgacacgtttttggg 307  Q
    ||||||||||||||| |||||| ||||||||||||||| |||||||    
T  30143003 tcgtgagcatgttttgcagggtgtccaatcgtgacacgattttggg 30143048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 89 - 179
Target Start/End: Complemental strand, 41365500 - 41365408
Alignment:
Q  89 ttggtgtagttagatgcaagg--gaaaagaaaaggagaatggtggttcattgttaaagtggcatcatcatcattttagagtcaaggtggagaa 179  Q
    ||||||||||| |||||||||  ||||  |||||| || ||||| || || ||||||||||||||||||||| |||  || ||||||||||||    
T  41365500 ttggtgtagttggatgcaaggaagaaagaaaaaggggattggtgattgatggttaaagtggcatcatcatcaatttgaaggcaaggtggagaa 41365408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 263 - 306
Target Start/End: Original strand, 43036085 - 43036128
Alignment:
Q  263 cgtgagcatgtttttcagggtttccaatcgtgacacgtttttgg 306  Q
    |||||||||||||| |||||| ||||||||||||||| ||||||    
T  43036085 cgtgagcatgttttgcagggtgtccaatcgtgacacgattttgg 43036128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 259 - 325
Target Start/End: Original strand, 4731317 - 4731382
Alignment:
Q  259 atgtcgtgagcatgtttttcagggtttccaatcgtgacacgtttttgggcaatcattacacgatttt 325  Q
    ||||||||||| |||||| |||||| ||||||||||||||| ||||||| || ||| ||| ||||||    
T  4731317 atgtcgtgagc-tgttttacagggtgtccaatcgtgacacgattttgggaaaacatgacatgatttt 4731382  T

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Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 135 - 205
Target Start/End: Original strand, 17849500 - 17849569
Alignment:
Q  135 attgttaaagtggcatcatcatcattttagagtcaaggtggagaaatgttgcaaagtgactcaaaaatgat 205  Q
    ||||||||| || ||||||||  | ||||||||||||||||||||  |||| |||||||||||||| ||||    
T  17849500 attgttaaattgacatcatcactaatttagagtcaaggtggagaatagttg-aaagtgactcaaaattgat 17849569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 325
Target Start/End: Original strand, 22975983 - 22976040
Alignment:
Q  268 gcatgtttttcagggtttccaatcgtgacacgtttttgggcaatcattacacgatttt 325  Q
    ||||| |||||||||| ||||||||||||||| ||||||| || | | ||||||||||    
T  22975983 gcatggttttcagggtgtccaatcgtgacacgattttgggaaaacgtgacacgatttt 22976040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 274 - 326
Target Start/End: Complemental strand, 1746714 - 1746662
Alignment:
Q  274 ttttcagggtttccaatcgtgacacgtttttgggcaatcattacacgattttt 326  Q
    |||||||||  ||||||||||||||| ||||||| |||| | |||||||||||    
T  1746714 ttttcagggcgtccaatcgtgacacgattttgggaaatcgtgacacgattttt 1746662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 138 - 202
Target Start/End: Original strand, 15949132 - 15949195
Alignment:
Q  138 gttaaagtggcatcatcatcattttagagtcaaggtggagaaatgttgcaaagtgactcaaaaat 202  Q
    |||||| ||| ||||||  || |||||||||||||||||||||||||| |||| |||| ||||||    
T  15949132 gttaaattggtatcatcgccaatttagagtcaaggtggagaaatgttg-aaagcgactaaaaaat 15949195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 274 - 326
Target Start/End: Complemental strand, 34257000 - 34256948
Alignment:
Q  274 ttttcagggtttccaatcgtgacacgtttttgggcaatcattacacgattttt 326  Q
    |||||||||  ||||||||||||||| ||||||| |||| | |||||||||||    
T  34257000 ttttcagggcgtccaatcgtgacacgattttgggaaatcgtgacacgattttt 34256948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 6e-28; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 83 - 174
Target Start/End: Original strand, 54882320 - 54882411
Alignment:
Q  83 aactacttggtgtagttagatgcaagggaaaagaaaaggagaatggtggttcattgttaaagtggcatcatcatcattttagagtcaaggtg 174  Q
    ||||||||||||||||| ||||||||||||| | ||||||||||||||||| || |||||| | ||||||||||||||||||||||||||||    
T  54882320 aactacttggtgtagttggatgcaagggaaaggtaaaggagaatggtggttgatggttaaattagcatcatcatcattttagagtcaaggtg 54882411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 85 - 202
Target Start/End: Original strand, 29055866 - 29055983
Alignment:
Q  85 ctacttggtgtagttagatgcaagggaaaagaaaaggagaatggtggttcattgttaaagtggcatcatcatcattttagagtcaaggtggagaaatgtt 184  Q
    |||| |||||||||| |||| |||| ||| ||||| | | | ||||||| ||||||||| |||||||| |||||||||||||||||||||||||||||||    
T  29055866 ctacatggtgtagttggatggaaggaaaatgaaaaagggtaaggtggttaattgttaaattggcatcaccatcattttagagtcaaggtggagaaatgtt 29055965  T
Q  185 gcaaagtgactcaaaaat 202  Q
    | ||  ||||||||||||    
T  29055966 gtaatttgactcaaaaat 29055983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 85 - 179
Target Start/End: Complemental strand, 34571091 - 34570996
Alignment:
Q  85 ctacttggtgtagttagatgcaagggaaaagaaaa-ggagaatggtggttcattgttaaagtggcatcatcatcattttagagtcaaggtggagaa 179  Q
    ||||||||||||||| ||||||||||||||||||| ||| | |||||||| || ||||||||||||||||||||| |||  ||| |||||||||||    
T  34571091 ctacttggtgtagttggatgcaagggaaaagaaaaaggaaattggtggttgatggttaaagtggcatcatcatcaatttgaagttaaggtggagaa 34570996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 85 - 179
Target Start/End: Complemental strand, 12740222 - 12740129
Alignment:
Q  85 ctacttggtgtagttagatgcaagggaaaagaaaaggagaatggtggttcattgttaaagtggcatcatcatcattttagagtcaaggtggagaa 179  Q
    ||||||||||||||| ||||||||| ||||||||||| || |  ||||| || | |||||||||||||| |||| |||  |||||||||||||||    
T  12740222 ctacttggtgtagttggatgcaagg-aaaagaaaaggggattactggttgatggctaaagtggcatcattatcaatttgaagtcaaggtggagaa 12740129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 85 - 179
Target Start/End: Complemental strand, 12748428 - 12748335
Alignment:
Q  85 ctacttggtgtagttagatgcaagggaaaagaaaaggagaatggtggttcattgttaaagtggcatcatcatcattttagagtcaaggtggagaa 179  Q
    ||||||||||||||| ||||||||| ||||||||||| || |  ||||| || | |||||||||||||| |||| |||  |||||||||||||||    
T  12748428 ctacttggtgtagttggatgcaagg-aaaagaaaaggggattactggttgatggctaaagtggcatcattatcaatttgaagtcaaggtggagaa 12748335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 219 - 326
Target Start/End: Original strand, 3909715 - 3909822
Alignment:
Q  219 aaatcatgacacgatttgtggaccatgacacaattttcctatgtcgtgagcatgtttttcagggtttccaatcgtgacacgtttttgggcaatcattaca 318  Q
    ||||| ||||||||||| || | |||| ||| ||||| | |||||||||||||||||| || ||| || |||||||||||| |||| || || ||| |||    
T  3909715 aaatcgtgacacgatttttgaagcatgtcacgattttgcaatgtcgtgagcatgttttgcacggtgtcaaatcgtgacacgatttttggaaaacatgaca 3909814  T
Q  319 cgattttt 326  Q
    | ||||||    
T  3909815 ctattttt 3909822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 138 - 203
Target Start/End: Original strand, 36770966 - 36771031
Alignment:
Q  138 gttaaagtggcatcatcatcattttagagtcaaggtggagaaatgttgcaaagtgactcaaaaatg 203  Q
    |||||| | |||||||||  ||||||||||||||||| |||| ||||  |||||||||||||||||    
T  36770966 gttaaatttgcatcatcactattttagagtcaaggtgaagaattgttaaaaagtgactcaaaaatg 36771031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 185
Target Start/End: Original strand, 5137819 - 5137879
Alignment:
Q  126 tggtggttcattgttaaagtggcatcatcatcattttag-agtcaaggtggagaaatgttg 185  Q
    |||||||| || |||||||||||||||||| ||  |||| |||||||||||||||||||||    
T  5137819 tggtggttgatggttaaagtggcatcatcaccaaattagaagtcaaggtggagaaatgttg 5137879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 270 - 326
Target Start/End: Complemental strand, 5370575 - 5370519
Alignment:
Q  270 atgtttttcagggtttccaatcgtgacacgtttttgggcaatcattacacgattttt 326  Q
    |||||||||||||  ||||||||||||||| ||||||| |||| | |||||||||||    
T  5370575 atgtttttcagggcgtccaatcgtgacacgattttgggaaatcgtgacacgattttt 5370519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 307
Target Start/End: Original strand, 6655400 - 6655444
Alignment:
Q  263 cgtgagcatgtttttcagggtttccaatcgtgacacgtttttggg 307  Q
    |||||||||||||| |||||| ||||||||||||||| |||||||    
T  6655400 cgtgagcatgttttgcagggtgtccaatcgtgacacgattttggg 6655444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 127 - 185
Target Start/End: Original strand, 7124434 - 7124493
Alignment:
Q  127 ggtggttcattgttaaagtggcatcatcatcattttag-agtcaaggtggagaaatgttg 185  Q
    ||||||| || |||||||||||||||||| ||  |||| |||||||||||||||||||||    
T  7124434 ggtggttgatggttaaagtggcatcatcaccaaattagaagtcaaggtggagaaatgttg 7124493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 127 - 185
Target Start/End: Original strand, 8395136 - 8395195
Alignment:
Q  127 ggtggttcattgttaaagtggcatcatcatcattttag-agtcaaggtggagaaatgttg 185  Q
    ||||||| || |||||||||||||||||| ||  |||| |||||||||||||||||||||    
T  8395136 ggtggttgatggttaaagtggcatcatcaccaaattagaagtcaaggtggagaaatgttg 8395195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 325
Target Start/End: Original strand, 54882485 - 54882546
Alignment:
Q  264 gtgagcatgtttttcagggtttccaatcgtgacacgtttttgggcaatcattacacgatttt 325  Q
    ||||||||| ||| |||||| ||||||||||||||| ||||||| || | | ||||||||||    
T  54882485 gtgagcatggtttgcagggtgtccaatcgtgacacgattttgggaaaacgtgacacgatttt 54882546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 274 - 326
Target Start/End: Complemental strand, 52095856 - 52095804
Alignment:
Q  274 ttttcagggtttccaatcgtgacacgtttttgggcaatcattacacgattttt 326  Q
    |||||||||| ||||||||||||||| ||||||| || | | |||||||||||    
T  52095856 ttttcagggtgtccaatcgtgacacgattttgggaaaacgtgacacgattttt 52095804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 85 - 200
Target Start/End: Original strand, 776751 - 776866
Alignment:
Q  85 ctacttggtgtagttagatgcaagggaaaagaaaaggagaatggtggttcattgttaaagtggcatcatcatcattttagagtcaaggtggagaaatgtt 184  Q
    ||||||||||||||| ||||||||| ||   |||||||||||||||||| || ||||||||  ||||| ||||| |||||||||||||||||||||||||    
T  776751 ctacttggtgtagttggatgcaaggaaatgcaaaaggagaatggtggttgatggttaaagttccatcaccatcaatttagagtcaaggtggagaaatgtt 776850  T
Q  185 gcaaagtgactcaaaa 200  Q
    | || ||| |||||||    
T  776851 gaaatgtgtctcaaaa 776866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 85 - 200
Target Start/End: Complemental strand, 50167839 - 50167718
Alignment:
Q  85 ctacttggtgtagttagatgcaagg-----gaaaag-aaaaggagaatggtggttcattgttaaagtggcatcatcatcattttagagtcaaggtggaga 178  Q
    ||||||||||||||| |||||||||     |||||| |||||||||||||||||| || ||||||||  ||||| ||||| |||||||||||||||||||    
T  50167839 ctacttggtgtagttggatgcaaggaaaaggaaaaggaaaaggagaatggtggttgatggttaaagtttcatcaccatcaatttagagtcaaggtggaga 50167740  T
Q  179 aatgttgcaaagtgactcaaaa 200  Q
    ||||||| || ||| |||||||    
T  50167739 aatgttgaaatgtgtctcaaaa 50167718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 118 - 202
Target Start/End: Complemental strand, 13547922 - 13547837
Alignment:
Q  118 aaggagaatggtggttcattgttaaagtggcatcatcatcattttagagtcaaggtggagaaatgttg-caaagtgactcaaaaat 202  Q
    |||||||||||||||| || |||||| | |||||||||||||||||||||||| |||||||| |||||  || |||||||||||||    
T  13547922 aaggagaatggtggttgatggttaaattagcatcatcatcattttagagtcaatgtggagaattgttgagaatgtgactcaaaaat 13547837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 85 - 143
Target Start/End: Complemental strand, 28221542 - 28221484
Alignment:
Q  85 ctacttggtgtagttagatgcaagggaaaagaaaaggagaatggtggttcattgttaaa 143  Q
    ||||||||||||||| ||||||||||||||||||||||  ||||||||| || ||||||    
T  28221542 ctacttggtgtagttggatgcaagggaaaagaaaaggatcatggtggttgatggttaaa 28221484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 259 - 325
Target Start/End: Complemental strand, 37033797 - 37033731
Alignment:
Q  259 atgtcgtgagcatgtttttcagggtttccaatcgtgacacgtttttgggcaatcattacacgatttt 325  Q
    |||||||||||||||||| |||||| ||||||||||||||| |||| || || ||| ||||||||||    
T  37033797 atgtcgtgagcatgttttgcagggtgtccaatcgtgacacgattttcgggaaacatgacacgatttt 37033731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 95 - 200
Target Start/End: Original strand, 41360441 - 41360545
Alignment:
Q  95 tagttagatgcaagggaaaagaaaaggagaatggtggttcattgttaaagtggcatcatcatcattttagagtcaaggtggagaaatgttgcaaagtgac 194  Q
    ||||| ||||||||| | | ||| || |||||||||||| || |||||  || ||||| |||||  ||||||||||||||||||||||||| ||| ||||    
T  41360441 tagttggatgcaaggaatatgaagagaagaatggtggttgatggttaat-tgacatcaccatcaaattagagtcaaggtggagaaatgttgaaaattgac 41360539  T
Q  195 tcaaaa 200  Q
    ||||||    
T  41360540 tcaaaa 41360545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 85 - 176
Target Start/End: Original strand, 31658721 - 31658812
Alignment:
Q  85 ctacttggtgtagttagatgcaagggaaaagaaaa-ggagaatggtggttcattgttaaagtggcatcatcatcattttagagtcaaggtgga 176  Q
    ||||||||||||||| ||||||| ||||||||||| || || |||||||| || ||||||||| ||||||||||| |||  || |||||||||    
T  31658721 ctacttggtgtagttggatgcaa-ggaaaagaaaagggggattggtggttgatggttaaagtgacatcatcatcaatttgaaggcaaggtgga 31658812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 118 - 185
Target Start/End: Original strand, 19753902 - 19753969
Alignment:
Q  118 aaggagaatggtggttcattgttaaagtggcatcatcatcattttagagtcaaggtggagaaatgttg 185  Q
    |||||||||||||||| || |||||| | | ||||||||||||||| |||||||||| |||| |||||    
T  19753902 aaggagaatggtggttgatggttaaattaggatcatcatcattttatagtcaaggtgaagaattgttg 19753969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 127 - 198
Target Start/End: Original strand, 47703333 - 47703404
Alignment:
Q  127 ggtggttcattgttaaagtggcatcatcatcattttagagtcaaggtggagaaatgttgcaaagtgactcaa 198  Q
    ||||||| || |||||| || ||||| || || ||||||||||||||||| |||||||| ||| ||||||||    
T  47703333 ggtggttgatggttaaattgacatcaccaccaatttagagtcaaggtggataaatgttgtaaattgactcaa 47703404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 118 - 184
Target Start/End: Complemental strand, 31928509 - 31928443
Alignment:
Q  118 aaggagaatggtggttcattgttaaagtggcatcatcatcattttagagtcaaggtggagaaatgtt 184  Q
    |||||| | ||||||| || |||||| |||||||| ||| | |||||||||||||||||||| ||||    
T  31928509 aaggagcaaggtggttgatggttaaattggcatcaccataaatttagagtcaaggtggagaattgtt 31928443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 305
Target Start/End: Complemental strand, 4553197 - 4553112
Alignment:
Q  220 aatcatgacacgatttgtggaccatgacacaattttcctatgtcgtgagcatgtttttcagggtttccaatcgtgacacgtttttg 305  Q
    |||| |||||||||||||| | | || ||| ||||  | ||| ||||| |||||||| |||||| ||||||||||||||| |||||    
T  4553197 aatcgtgacacgatttgtgaagcgtgtcacgatttcgcaatgccgtgaacatgttttgcagggtatccaatcgtgacacgattttg 4553112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 274 - 326
Target Start/End: Original strand, 20762344 - 20762396
Alignment:
Q  274 ttttcagggtttccaatcgtgacacgtttttgggcaatcattacacgattttt 326  Q
    |||||||||  ||||||||||||||| ||||||| |||| | |||||||||||    
T  20762344 ttttcagggcgtccaatcgtgacacgattttgggaaatcgtgacacgattttt 20762396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 304
Target Start/End: Original strand, 49917969 - 49918052
Alignment:
Q  220 aatcatgacacgatttgtggaccatgacacaattttcctatgtcgtgagcatgtttttcagggtttccaatcgtgacacgttttt 304  Q
    |||| |||||||||||||| | | || ||||||||| | |||||| |||| |||||| ||||||  |||||||||||||| ||||    
T  49917969 aatcgtgacacgatttgtgaagcgtgtcacaattttgcaatgtcgagagc-tgttttgcagggtgcccaatcgtgacacgatttt 49918052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 6e-25; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 85 - 179
Target Start/End: Original strand, 48491083 - 48491177
Alignment:
Q  85 ctacttggtgtagttagatgcaagggaaaagaaaaggagaatggtggttcattgttaaagtggcatcatcatcattttagagtcaaggtggagaa 179  Q
    ||||||||||||||| |||||||||||||||||||||  | |||||||| || ||||||||||||||||||||| |||  |||||||||||||||    
T  48491083 ctacttggtgtagttggatgcaagggaaaagaaaagggaattggtggttgatggttaaagtggcatcatcatcaatttgaagtcaaggtggagaa 48491177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 118 - 204
Target Start/End: Complemental strand, 4509474 - 4509388
Alignment:
Q  118 aaggagaatggtggttcattgttaaagtggcatcatcatcattttagagtcaaggtggagaaatgttgcaaagtgactcaaaaatga 204  Q
    |||||||||||||||| || |||||| |  |||||||||||||||||||||||||||||||| |||||  | ||| |||||||||||    
T  4509474 aaggagaatggtggttgatggttaaattaacatcatcatcattttagagtcaaggtggagaattgttgagatgtggctcaaaaatga 4509388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 118 - 204
Target Start/End: Complemental strand, 4511316 - 4511230
Alignment:
Q  118 aaggagaatggtggttcattgttaaagtggcatcatcatcattttagagtcaaggtggagaaatgttgcaaagtgactcaaaaatga 204  Q
    |||||||||||||||| || |||||| |  |||||||||||||||||||||||||||||||| |||||  | ||| |||||||||||    
T  4511316 aaggagaatggtggttgatggttaaattaacatcatcatcattttagagtcaaggtggagaattgttgagatgtggctcaaaaatga 4511230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 118 - 204
Target Start/End: Original strand, 6431362 - 6431448
Alignment:
Q  118 aaggagaatggtggttcattgttaaagtggcatcatcatcattttagagtcaaggtggagaaatgttgcaaagtgactcaaaaatga 204  Q
    |||||||||||||||| || |||||| | | ||||||||||||||||||||||||||||||| |||||  | ||| |||||||||||    
T  6431362 aaggagaatggtggttgatggttaaattagtatcatcatcattttagagtcaaggtggagaattgttgagatgtggctcaaaaatga 6431448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 85 - 185
Target Start/End: Complemental strand, 47674628 - 47674529
Alignment:
Q  85 ctacttggtgtagttagatgcaagggaaaagaaaaggagaatggtggttcattgttaaagtggcatcatcatcattttagagtcaaggtggagaaatgtt 184  Q
    ||||||||||||||| ||||||||| ||||||||||   | | ||||||  | ||||||||||||||||||||| |||  ||||||||||||||||||||    
T  47674628 ctacttggtgtagttggatgcaagg-aaaagaaaagataattagtggttggtggttaaagtggcatcatcatcaatttgaagtcaaggtggagaaatgtt 47674530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 138 - 203
Target Start/End: Complemental strand, 44011330 - 44011265
Alignment:
Q  138 gttaaagtggcatcatcatcattttagagtcaaggtggagaaatgttgcaaagtgactcaaaaatg 203  Q
    |||||| || ||||||||  |||||||||||||||||||||| | ||| |||||||||||||||||    
T  44011330 gttaaattgacatcatcactattttagagtcaaggtggagaattattgaaaagtgactcaaaaatg 44011265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 127 - 185
Target Start/End: Complemental strand, 6592976 - 6592917
Alignment:
Q  127 ggtggttcattgttaaagtggcatcatcatcattttaga-gtcaaggtggagaaatgttg 185  Q
    ||||||| || |||||||||||||||||| ||  ||||| ||||||||||||||||||||    
T  6592976 ggtggttgatggttaaagtggcatcatcaccaaattagaagtcaaggtggagaaatgttg 6592917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 127 - 185
Target Start/End: Complemental strand, 18390617 - 18390558
Alignment:
Q  127 ggtggttcattgttaaagtggcatcatcatcattttaga-gtcaaggtggagaaatgttg 185  Q
    ||||||| || |||||||||||||||||| ||  ||||| ||||||||||||||||||||    
T  18390617 ggtggttgatggttaaagtggcatcatcaccaaattagaagtcaaggtggagaaatgttg 18390558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 127 - 205
Target Start/End: Complemental strand, 4175435 - 4175357
Alignment:
Q  127 ggtggttcattgttaaagtggcatcatcatcattttagagtcaaggtggagaaatgttgcaaagtgactcaaaaatgat 205  Q
    ||||||| || |||||| || ||||||||| |||||| |||||  ||||||||||||||  || |||||||||| ||||    
T  4175435 ggtggttaatggttaaattgacatcatcattattttaaagtcattgtggagaaatgttgataattgactcaaaattgat 4175357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 325
Target Start/End: Complemental strand, 14070339 - 14070278
Alignment:
Q  264 gtgagcatgtttttcagggtttccaatcgtgacacgtttttgggcaatcattacacgatttt 325  Q
    ||||||||| |||||||||| | ||||||||||||| ||||||| || | | ||||||||||    
T  14070339 gtgagcatggttttcagggtgttcaatcgtgacacgattttgggaaaacgtgacacgatttt 14070278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 325
Target Start/End: Complemental strand, 14380367 - 14380306
Alignment:
Q  264 gtgagcatgtttttcagggtttccaatcgtgacacgtttttgggcaatcattacacgatttt 325  Q
    ||||||||| |||||||||| | ||||||||||||| ||||||| || | | ||||||||||    
T  14380367 gtgagcatggttttcagggtgttcaatcgtgacacgattttgggaaaacgtgacacgatttt 14380306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 179
Target Start/End: Original strand, 26214631 - 26214672
Alignment:
Q  138 gttaaagtggcatcatcatcattttagagtcaaggtggagaa 179  Q
    |||||| ||||||||| |||| ||||||||||||||||||||    
T  26214631 gttaaattggcatcattatcaatttagagtcaaggtggagaa 26214672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 274 - 326
Target Start/End: Original strand, 4178447 - 4178499
Alignment:
Q  274 ttttcagggtttccaatcgtgacacgtttttgggcaatcattacacgattttt 326  Q
    |||||||||  ||||||||||||||| ||||||| |||| | |||||||||||    
T  4178447 ttttcagggcgtccaatcgtgacacgattttgggaaatcgtgacacgattttt 4178499  T

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Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 125 - 185
Target Start/End: Original strand, 9189443 - 9189503
Alignment:
Q  125 atggtggttcattgttaaagtggcatcatcatcattttagagtcaaggtggagaaatgttg 185  Q
    ||||||||| || |||||| || ||||||||||| ||   |||||||||||||||||||||    
T  9189443 atggtggttgatggttaaactgacatcatcatcaattagaagtcaaggtggagaaatgttg 9189503  T

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Target: chr3 (Bit Score: 59; Significance: 6e-25; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 85 - 179
Target Start/End: Original strand, 44331052 - 44331146
Alignment:
Q  85 ctacttggtgtagttagatgcaagggaaaagaaaaggagaatggtggttcattgttaaagtggcatcatcatcattttagagtcaaggtggagaa 179  Q
    ||||||||||||||| ||| |||||||||||||||||||| |||||||| || ||||||||| ||||||||||| |||  |||||||||||||||    
T  44331052 ctacttggtgtagttggatacaagggaaaagaaaaggagattggtggttgatggttaaagtgacatcatcatcaatttgaagtcaaggtggagaa 44331146  T

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Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 85 - 185
Target Start/End: Original strand, 29812547 - 29812645
Alignment:
Q  85 ctacttggtgtagttagatgcaagggaaaagaaaaggagaatggtggttcattgttaaagtggcatcatcatcattttagagtcaaggtggagaaatgtt 184  Q
    ||||||||||||||| ||||||||| ||||||||||| || |||||||| || ||||||||| ||||||||||| |||  ||||||||||||||||||||    
T  29812547 ctacttggtgtagttggatgcaagg-aaaagaaaagg-gattggtggttgatggttaaagtgacatcatcatcaatttgaagtcaaggtggagaaatgtt 29812644  T

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Target: chr3; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 87 - 185
Target Start/End: Original strand, 7763935 - 7764034
Alignment:
Q  87 acttggtgtagttagatgcaagggaaaa-gaaaagg-agaatggtggttcattgttaaagtggcatcatcatcattttagagtcaaggtggagaaatgtt 184  Q
    ||||||||||||| |||||||||||||| ||||||| ||| |||||||| || ||||||||||||||||||||| |||  |||||||||||| |||||||    
T  7763935 acttggtgtagttggatgcaagggaaaaagaaaagggagattggtggttgatggttaaagtggcatcatcatcaatttgaagtcaaggtgga-aaatgtt 7764033  T

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Target: chr3; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 87 - 179
Target Start/End: Complemental strand, 9634985 - 9634892
Alignment:
Q  87 acttggtgtagttagatgcaagggaaaagaaaagg-agaatggtggttcattgttaaagtggcatcatcatcattttagagtcaaggtggagaa 179  Q
    ||||||||||||| | |||||| |||||||||||| ||| |||||||| || ||||||||| ||||||||||| |||  |||||||||||||||    
T  9634985 acttggtgtagttgggtgcaagtgaaaagaaaagggagattggtggttgatggttaaagtgacatcatcatcagtttgaagtcaaggtggagaa 9634892  T

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Target: chr3; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 89 - 185
Target Start/End: Original strand, 37407941 - 37408040
Alignment:
Q  89 ttggtgtagttagatgcaagggaaaa-gaaaag--gagaatggtggttcattgttaaagtggcatcatcatcattttagagtcaaggtggagaaatgttg 185  Q
    ||||||||||| |||||||||||||| ||||||  |||| || ||| | || ||||||||||||||||||||| |||  |||||||||||||||||||||    
T  37407941 ttggtgtagttggatgcaagggaaaaagaaaagaggagattgatggctgatggttaaagtggcatcatcatcaatttgaagtcaaggtggagaaatgttg 37408040  T

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Target: chr3; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 85 - 179
Target Start/End: Complemental strand, 2075667 - 2075572
Alignment:
Q  85 ctacttggtgtagttagatgcaagggaaaa-gaaaaggagaatggtggttcattgttaaagtggcatcatcatcattttagagtcaaggtggagaa 179  Q
    |||||||||||||||||| ||||||||||| ||||||| |||||||| || ||   |||||| |||||| ||||| |||||||||||| |||||||    
T  2075667 ctacttggtgtagttagaagcaagggaaaatgaaaaggggaatggtgattgatgcctaaagtagcatcaccatcaatttagagtcaagatggagaa 2075572  T

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Target: chr3; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 85 - 179
Target Start/End: Original strand, 40734911 - 40735005
Alignment:
Q  85 ctacttggtgtagttagatgcaagggaaaagaaaagga-gaatggtggttcattgttaaagtggcatcatcatcattttagagtcaaggtggagaa 179  Q
    ||||||||||||||| ||||||| ||||||||||| || || ||||| || || ||||||||||||||||||||| |||  |||||||||||||||    
T  40734911 ctacttggtgtagttggatgcaa-ggaaaagaaaaagaggattggtgattgatggttaaagtggcatcatcatcaatttgaagtcaaggtggagaa 40735005  T

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Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 87 - 179
Target Start/End: Complemental strand, 5258810 - 5258717
Alignment:
Q  87 acttggtgtagttagatgcaagggaaaagaaaagg-agaatggtggttcattgttaaagtggcatcatcatcattttagagtcaaggtggagaa 179  Q
    ||||||| |||||  || ||||||||||||||||| ||| |||||||| || ||||||||| ||||||||||| |||  |||||||||||||||    
T  5258810 acttggtatagttgaattcaagggaaaagaaaagggagattggtggttgatggttaaagtgacatcatcatcaatttgaagtcaaggtggagaa 5258717  T

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Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 87 - 185
Target Start/End: Original strand, 6718192 - 6718292
Alignment:
Q  87 acttggtgtagttagatgcaagggaaaagaaaag-gagaatggtggttcattgttaaagtggcatcatcatcattttag-agtcaaggtggagaaatgtt 184  Q
    |||||||  |||| |||||||||||||||||  | |||| |||||||| || |||||||||||||||||| ||  |||| ||||||||||||||||||||    
T  6718192 acttggtagagttggatgcaagggaaaagaatggtgagattggtggttgatggttaaagtggcatcatcaccaaattagaagtcaaggtggagaaatgtt 6718291  T
Q  185 g 185  Q
    |    
T  6718292 g 6718292  T

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Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 125 - 200
Target Start/End: Original strand, 4386445 - 4386520
Alignment:
Q  125 atggtggttcattgttaaagtggcatcatcatcattttagagtcaaggtggagaaatgttgcaaagtgactcaaaa 200  Q
    ||||||||| || |||||| || |||||||| || |||||||||||||||||||||||||| | | ||||||||||    
T  4386445 atggtggttgatggttaaattgacatcatcaccaatttagagtcaaggtggagaaatgttgtatactgactcaaaa 4386520  T

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Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 96 - 185
Target Start/End: Original strand, 10057945 - 10058031
Alignment:
Q  96 agttagatgcaagggaaaagaaaaggagaatggtggttcattgttaaagtggcatcatcatcattttag-agtcaaggtggagaaatgttg 185  Q
    |||| ||||||||||||||| ||    || |||||||| || |||||||||||||||||| ||  |||| |||||||||||||||||||||    
T  10057945 agttggatgcaagggaaaaggaa----gattggtggttgatggttaaagtggcatcatcaccaaattagaagtcaaggtggagaaatgttg 10058031  T

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Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 96 - 185
Target Start/End: Original strand, 10060167 - 10060253
Alignment:
Q  96 agttagatgcaagggaaaagaaaaggagaatggtggttcattgttaaagtggcatcatcatcattttag-agtcaaggtggagaaatgttg 185  Q
    |||| ||||||||||||||| ||    || |||||||| || |||||||||||||||||| ||  |||| |||||||||||||||||||||    
T  10060167 agttggatgcaagggaaaaggaa----gattggtggttgatggttaaagtggcatcatcaccaaattagaagtcaaggtggagaaatgttg 10060253  T

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Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 96 - 185
Target Start/End: Original strand, 10062389 - 10062475
Alignment:
Q  96 agttagatgcaagggaaaagaaaaggagaatggtggttcattgttaaagtggcatcatcatcattttag-agtcaaggtggagaaatgttg 185  Q
    |||| ||||||||||||||| ||    || |||||||| || |||||||||||||||||| ||  |||| |||||||||||||||||||||    
T  10062389 agttggatgcaagggaaaaggaa----gattggtggttgatggttaaagtggcatcatcaccaaattagaagtcaaggtggagaaatgttg 10062475  T

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Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 96 - 185
Target Start/End: Original strand, 10064611 - 10064697
Alignment:
Q  96 agttagatgcaagggaaaagaaaaggagaatggtggttcattgttaaagtggcatcatcatcattttag-agtcaaggtggagaaatgttg 185  Q
    |||| ||||||||||||||| ||    || |||||||| || |||||||||||||||||| ||  |||| |||||||||||||||||||||    
T  10064611 agttggatgcaagggaaaaggaa----gattggtggttgatggttaaagtggcatcatcaccaaattagaagtcaaggtggagaaatgttg 10064697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 96 - 185
Target Start/End: Original strand, 10066833 - 10066919
Alignment:
Q  96 agttagatgcaagggaaaagaaaaggagaatggtggttcattgttaaagtggcatcatcatcattttag-agtcaaggtggagaaatgttg 185  Q
    |||| ||||||||||||||| ||    || |||||||| || |||||||||||||||||| ||  |||| |||||||||||||||||||||    
T  10066833 agttggatgcaagggaaaaggaa----gattggtggttgatggttaaagtggcatcatcaccaaattagaagtcaaggtggagaaatgttg 10066919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 185
Target Start/End: Complemental strand, 23198626 - 23198526
Alignment:
Q  87 acttggtgtagttagatgcaagggaaaagaaaagg-agaatggtggttcattgttaaagtggcatcatcatcattttaga-gtcaaggtggagaaatgtt 184  Q
    ||||||| |||||  |||||||||||||| ||||| ||| |||||||| || |||||| || ||||| || ||  ||||| |||||||||||||||||||    
T  23198626 acttggtatagttgaatgcaagggaaaagcaaagggagattggtggttgatggttaaattgacatcaccaacaaattagaagtcaaggtggagaaatgtt 23198527  T
Q  185 g 185  Q
    |    
T  23198526 g 23198526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 127 - 185
Target Start/End: Complemental strand, 4599162 - 4599103
Alignment:
Q  127 ggtggttcattgttaaagtggcatcatcatcattttaga-gtcaaggtggagaaatgttg 185  Q
    ||||||| || |||||||||||||||||| ||  ||||| ||||||||||||||||||||    
T  4599162 ggtggttgatggttaaagtggcatcatcaccaaattagaagtcaaggtggagaaatgttg 4599103  T

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Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 127 - 185
Target Start/End: Original strand, 10210923 - 10210982
Alignment:
Q  127 ggtggttcattgttaaagtggcatcatcatcattttag-agtcaaggtggagaaatgttg 185  Q
    ||||||| || |||||||||||||||||| ||  |||| |||||||||||||||||||||    
T  10210923 ggtggttgatggttaaagtggcatcatcaccaaattagaagtcaaggtggagaaatgttg 10210982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 264 - 323
Target Start/End: Original strand, 46173179 - 46173238
Alignment:
Q  264 gtgagcatgtttttcagggtttccaatcgtgacacgtttttgggcaatcattacacgatt 323  Q
    ||||||||| ||| |||||| ||||||||||||||| ||||||| || ||| ||||||||    
T  46173179 gtgagcatggtttgcagggtgtccaatcgtgacacgattttgggaaaacatgacacgatt 46173238  T

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Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 118 - 192
Target Start/End: Complemental strand, 43402661 - 43402588
Alignment:
Q  118 aaggagaatggtggttcattgttaaagtggcatcatcatcattttagagtcaaggtggagaaatgttgcaaagtg 192  Q
    ||||||| |||||||| || ||||||||||||||||| ||| |||  || |||||||||| ||||||| ||||||    
T  43402661 aaggagattggtggttgatggttaaagtggcatcatcttcaatttgaaggcaaggtggag-aatgttgtaaagtg 43402588  T

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Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 325
Target Start/End: Complemental strand, 49200175 - 49200113
Alignment:
Q  263 cgtgagcatgtttttcagggtttccaatcgtgacacgtttttgggcaatcattacacgatttt 325  Q
    |||||||||||||| |||||| ||||||||||||||| | ||||| || | | ||||||||||    
T  49200175 cgtgagcatgttttgcagggtgtccaatcgtgacacgatgttggggaaacgtgacacgatttt 49200113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 274 - 326
Target Start/End: Complemental strand, 9636624 - 9636572
Alignment:
Q  274 ttttcagggtttccaatcgtgacacgtttttgggcaatcattacacgattttt 326  Q
    |||||||||  ||||||||||||| | ||||||| |||||| |||||||||||    
T  9636624 ttttcagggcgtccaatcgtgacatgattttgggaaatcatgacacgattttt 9636572  T

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Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 85 - 179
Target Start/End: Original strand, 13487702 - 13487796
Alignment:
Q  85 ctacttggtgtagttagatgcaagggaaaagaaaaggagaatggtggttcattgttaaagtggcatcatcatcattttagagtcaaggtggagaa 179  Q
    |||||||||||| || ||||||| |||||||||||| ||| |||||||| || ||||||||||||||||||||| |||  |||||||||||||||    
T  13487702 ctacttggtgtacttggatgcaaaggaaaagaaaagaagattggtggttgatggttaaagtggcatcatcatcaatttgaagtcaaggtggagaa 13487796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 87 - 185
Target Start/End: Original strand, 29722055 - 29722156
Alignment:
Q  87 acttggtgtagttagatgcaagggaaaagaaaagg--agaatggtggttcattgttaaagtggcatcatcatcattttag-agtcaaggtggagaaatgt 183  Q
    ||||||| ||||| |||||||||||||| ||||||  ||| |||||||| || |||||||||||||||||| ||  |||| |||||||||||||||||||    
T  29722055 acttggtatagttggatgcaagggaaaacaaaaggggagattggtggttgatggttaaagtggcatcatcaccaaattagaagtcaaggtggagaaatgt 29722154  T
Q  184 tg 185  Q
    ||    
T  29722155 tg 29722156  T

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Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 85 - 181
Target Start/End: Complemental strand, 42426921 - 42426825
Alignment:
Q  85 ctacttggtgtagttagatgcaagggaaaagaaaaggagaatggtggttcattgttaaagtggcatcatcatcattttagagtcaaggtggagaaat 181  Q
    ||||||||||||| | ||||||||||||||||||| |  | |||||||| ||  |||||||||||||||||||| |||  | |||||||||||||||    
T  42426921 ctacttggtgtagatggatgcaagggaaaagaaaaaggaattggtggttgatacttaaagtggcatcatcatcaatttgaattcaaggtggagaaat 42426825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 87 - 185
Target Start/End: Original strand, 16408981 - 16409081
Alignment:
Q  87 acttggtgtagttagatgcaagggaaaagaaaa-ggagaatggtggttcattgttaaagtggcatcatcatcattttag-agtcaaggtggagaaatgtt 184  Q
    ||||||| |||||  |||||||||||||||||| || || |||||||| || ||||||||| ||||| || ||  |||| ||||||||||||||||||||    
T  16408981 acttggtatagttgaatgcaagggaaaagaaaagggggattggtggttgatggttaaagtgacatcaccaccaaattagaagtcaaggtggagaaatgtt 16409080  T
Q  185 g 185  Q
    |    
T  16409081 g 16409081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 138 - 192
Target Start/End: Original strand, 535459 - 535513
Alignment:
Q  138 gttaaagtggcatcatcatcattttagagtcaaggtggagaaatgttgcaaagtg 192  Q
    ||||||||||||||||||||| |||  || |||||||||||||||||| ||||||    
T  535459 gttaaagtggcatcatcatcaatttgaaggcaaggtggagaaatgttgtaaagtg 535513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 127 - 185
Target Start/End: Original strand, 16546161 - 16546220
Alignment:
Q  127 ggtggttcattgttaaagtggcatcatcatcattttag-agtcaaggtggagaaatgttg 185  Q
    ||||||| || |||||||||||||||||| ||  |||| |||||||||||||||||||||    
T  16546161 ggtggttgatggttaaagtggcatcatcaccaaattagaagtcaaggtggagaaatgttg 16546220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 127 - 185
Target Start/End: Original strand, 40381834 - 40381893
Alignment:
Q  127 ggtggttcattgttaaagtggcatcatcatcattttag-agtcaaggtggagaaatgttg 185  Q
    ||||||| || |||||||||||||||||| ||  |||| |||||||||||||||||||||    
T  40381834 ggtggttgatggttaaagtggcatcatcaccaaattagaagtcaaggtggagaaatgttg 40381893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 276
Target Start/End: Complemental strand, 3076210 - 3076113
Alignment:
Q  181 tgttgcaaagtgactcaaaaatgattt--gagcatgttacaaatcatgacacgatttgtggaccatgacacaattttcctatgtcgtgagcatgtttt 276  Q
    ||||| || ||||||||||||||||||  ||  | ||| |||||| |||||||||||||| | | ||  || |||||||||||| |||||||||||||    
T  3076210 tgttgtaatgtgactcaaaaatgattttggaaaaagttgcaaatcgtgacacgatttgtgaagcgtgttacgattttcctatgttgtgagcatgtttt 3076113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 5e-22; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 87 - 179
Target Start/End: Complemental strand, 5406843 - 5406750
Alignment:
Q  87 acttggtgtagttagatgcaagggaaaagaaaagg-agaatggtggttcattgttaaagtggcatcatcatcattttagagtcaaggtggagaa 179  Q
    ||||||||||||| |||||||| |||||||||||| ||| |||||||| || ||||||||||||||||||||| |||  |||||||||||||||    
T  5406843 acttggtgtagttggatgcaagcgaaaagaaaagggagattggtggttgatggttaaagtggcatcatcatcaatttcaagtcaaggtggagaa 5406750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 87 - 179
Target Start/End: Complemental strand, 5411168 - 5411075
Alignment:
Q  87 acttggtgtagttagatgcaagggaaaagaaaagg-agaatggtggttcattgttaaagtggcatcatcatcattttagagtcaaggtggagaa 179  Q
    ||||||||||||| |||||||| |||||||||||| ||| |||||||| || ||||||||||||||||||||| |||  |||||||||||||||    
T  5411168 acttggtgtagttggatgcaagcgaaaagaaaagggagattggtggttgatggttaaagtggcatcatcatcaatttcaagtcaaggtggagaa 5411075  T

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Target: chr6; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 87 - 179
Target Start/End: Complemental strand, 5407611 - 5407518
Alignment:
Q  87 acttggtgtagttagatgcaagggaaaagaaaa-ggagaatggtggttcattgttaaagtggcatcatcatcattttagagtcaaggtggagaa 179  Q
    ||||||||||||| ||||||||||||||||||| ||| | |||||| | || ||||||||||||||||||||| |||  |||||||||||||||    
T  5407611 acttggtgtagttggatgcaagggaaaagaaaagggatattggtggatgatggttaaagtggcatcatcatcaatttgaagtcaaggtggagaa 5407518  T

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Target: chr6; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 87 - 179
Target Start/End: Complemental strand, 5411936 - 5411843
Alignment:
Q  87 acttggtgtagttagatgcaagggaaaagaaaa-ggagaatggtggttcattgttaaagtggcatcatcatcattttagagtcaaggtggagaa 179  Q
    ||||||||||||| ||||||||||||||||||| ||| | |||||| | || ||||||||||||||||||||| |||  |||||||||||||||    
T  5411936 acttggtgtagttggatgcaagggaaaagaaaagggatattggtggatgatggttaaagtggcatcatcatcaatttgaagtcaaggtggagaa 5411843  T

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Target: chr6; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 87 - 185
Target Start/End: Original strand, 16554358 - 16554458
Alignment:
Q  87 acttggtgtagttagatgcaagggaaaagaaaa-ggagaatggtggttcattgttaaagtggcatcatcatcattttag-agtcaaggtggagaaatgtt 184  Q
    |||||||  |||| ||||||||||||||||||| ||||| |||||||| || |||||||||||||||||  ||  |||| ||||||||||||||||||||    
T  16554358 acttggtagagttggatgcaagggaaaagaaaagggagattggtggttgatggttaaagtggcatcatcgccaaattagaagtcaaggtggagaaatgtt 16554457  T
Q  185 g 185  Q
    |    
T  16554458 g 16554458  T

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Target: chr6; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 87 - 185
Target Start/End: Original strand, 16630914 - 16631014
Alignment:
Q  87 acttggtgtagttagatgcaagggaaaagaaaa-ggagaatggtggttcattgttaaagtggcatcatcatcattttag-agtcaaggtggagaaatgtt 184  Q
    |||||||  |||| ||||||||||||||||||| ||||| |||||||| || |||||||||||||||||  ||  |||| ||||||||||||||||||||    
T  16630914 acttggtagagttggatgcaagggaaaagaaaagggagattggtggttgatggttaaagtggcatcatcgccaaattagaagtcaaggtggagaaatgtt 16631013  T
Q  185 g 185  Q
    |    
T  16631014 g 16631014  T

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Target: chr6; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 87 - 185
Target Start/End: Original strand, 16652620 - 16652720
Alignment:
Q  87 acttggtgtagttagatgcaagggaaaagaaaagg-agaatggtggttcattgttaaagtggcatcatcatc-attttagagtcaaggtggagaaatgtt 184  Q
    |||||||  |||| ||||||||||||||||||||| ||| |||||||| || |||||||||||||||||| | | |||  ||||||||||||||||||||    
T  16652620 acttggtagagttggatgcaagggaaaagaaaagggagattggtggttgatggttaaagtggcatcatcaccaaatttgaagtcaaggtggagaaatgtt 16652719  T
Q  185 g 185  Q
    |    
T  16652720 g 16652720  T

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Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 10 - 50
Target Start/End: Complemental strand, 3050905 - 3050865
Alignment:
Q  10 acatcatcaagtgacaaaataaattatcccaacatttttta 50  Q
    ||||||||||||||| |||||||||||||||||||||||||    
T  3050905 acatcatcaagtgactaaataaattatcccaacatttttta 3050865  T

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Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 96 - 185
Target Start/End: Original strand, 34166584 - 34166670
Alignment:
Q  96 agttagatgcaagggaaaagaaaaggagaatggtggttcattgttaaagtggcatcatcatcattttag-agtcaaggtggagaaatgttg 185  Q
    |||| ||||||||||||||| ||    || |||||||| || |||||||||||||||||| ||  |||| |||||||||||||||||||||    
T  34166584 agttggatgcaagggaaaaggaa----gattggtggttgatggttaaagtggcatcatcaccaaattagaagtcaaggtggagaaatgttg 34166670  T

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Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 200
Target Start/End: Complemental strand, 24543205 - 24543165
Alignment:
Q  160 tttagagtcaaggtggagaaatgttgcaaagtgactcaaaa 200  Q
    |||||||||||||||||||||||||  ||||||||||||||    
T  24543205 tttagagtcaaggtggagaaatgttagaaagtgactcaaaa 24543165  T

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Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 325
Target Start/End: Original strand, 21593111 - 21593172
Alignment:
Q  264 gtgagcatgtttttcagggtttccaatcgtgacacgtttttgggcaatcattacacgatttt 325  Q
    ||||||||| |||||||||| ||||||||||||||  ||||||| || | | ||||||||||    
T  21593111 gtgagcatggttttcagggtgtccaatcgtgacacaattttgggaaaacgtgacacgatttt 21593172  T

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Target: scaffold0491 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0491
Description:

Target: scaffold0491; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 87 - 185
Target Start/End: Complemental strand, 9404 - 9304
Alignment:
Q  87 acttggtgtagttagatgcaagggaaaagaaaa-ggagaatggtggttcattgttaaagtggcatcatcatcattttag-agtcaaggtggagaaatgtt 184  Q
    ||||||| |||||  |||||||||||||||||| || || |||||||| || ||||||||| ||||| |||||  |||| ||||||||||||||||||||    
T  9404 acttggtatagttgaatgcaagggaaaagaaaagggggattggtggttgatggttaaagtgacatcaccatcaaattagaagtcaaggtggagaaatgtt 9305  T
Q  185 g 185  Q
    |    
T  9304 g 9304  T

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Target: scaffold0066 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 225 - 325
Target Start/End: Complemental strand, 20959 - 20859
Alignment:
Q  225 tgacacgatttgtggaccatgacacaattttcctatgtcgtgagcatgtttttcagggtttccaatcgtgacacgtttttgggcaatcattacacgattt 324  Q
    |||||||||||||| | | || ||| ||||| | |||||||||||||||||| |||||| ||||||| ||||||| ||||||| || | | |||||||||    
T  20959 tgacacgatttgtgaagcgtgtcacgattttgcaatgtcgtgagcatgttttgcagggtgtccaatcatgacacgattttgggaaaacgtgacacgattt 20860  T
Q  325 t 325  Q
    |    
T  20859 t 20859  T

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Target: scaffold0176 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 252 - 326
Target Start/End: Complemental strand, 17781 - 17707
Alignment:
Q  252 ttttcctatgtcgtgagcatgtttttcagggtttccaatcgtgacacgtttttgggcaatcattacacgattttt 326  Q
    |||||| |||||| ||||||||||| |||||| ||||| ||||||||| ||||||| || | | |||||||||||    
T  17781 ttttccaatgtcgagagcatgttttgcagggtgtccaaccgtgacacgattttgggaaaacgtgacacgattttt 17707  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 220 - 325
Target Start/End: Complemental strand, 36318559 - 36318453
Alignment:
Q  220 aatcatgacacgatttgtggaccatgacacaattttcctatgtcgtgagcatgtttttcagggtttccaatcgtgacacg-tttttgggcaatcattaca 318  Q
    |||| |||||||||||||| | | || ||| ||||  | |||||| ||||||||||| |||||| ||||||||||||||| |||||||| || | | |||    
T  36318559 aatcgtgacacgatttgtgaaacgtgtcacgatttcgcaatgtcgagagcatgttttgcagggtgtccaatcgtgacacgatttttggggaaacgtgaca 36318460  T
Q  319 cgatttt 325  Q
    |||||||    
T  36318459 cgatttt 36318453  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 198
Target Start/End: Complemental strand, 31056751 - 31056675
Alignment:
Q  122 agaatggtggttcattgttaaagtggcatcatcatcattttagagtcaaggtggagaaatgttgcaaagtgactcaa 198  Q
    |||| ||||||| ||  ||||| || ||||| || || |||||||||||||||||||||||||| ||| ||||||||    
T  31056751 agaaaggtggttgatgattaaattgacatcaccaccaatttagagtcaaggtggagaaatgttgaaaattgactcaa 31056675  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 10 - 53
Target Start/End: Complemental strand, 34907627 - 34907585
Alignment:
Q  10 acatcatcaagtgacaaaataaattatcccaacattttttaaca 53  Q
    ||||||||||||||| || |||||||||||||||||||||||||    
T  34907627 acatcatcaagtgactaa-taaattatcccaacattttttaaca 34907585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 259 - 305
Target Start/End: Complemental strand, 17057764 - 17057718
Alignment:
Q  259 atgtcgtgagcatgtttttcagggtttccaatcgtgacacgtttttg 305  Q
    |||||| ||||||||||| |||||| |||||||||||||| ||||||    
T  17057764 atgtcgagagcatgttttgcagggtgtccaatcgtgacacatttttg 17057718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 259 - 305
Target Start/End: Complemental strand, 17085747 - 17085701
Alignment:
Q  259 atgtcgtgagcatgtttttcagggtttccaatcgtgacacgtttttg 305  Q
    |||||| ||||||||||| |||||| |||||||||||||| ||||||    
T  17085747 atgtcgagagcatgttttgcagggtgtccaatcgtgacacatttttg 17085701  T

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Target: scaffold1908 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold1908
Description:

Target: scaffold1908; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 85 - 158
Target Start/End: Original strand, 1041 - 1114
Alignment:
Q  85 ctacttggtgtagttagatgcaagggaaaagaaaaggagaatggtggttcattgttaaagtggcatcatcatca 158  Q
    ||||||||||||| | ||||||||| |||  |||| | || |||||||| || |||||||||||||||||||||    
T  1041 ctacttggtgtagatggatgcaaggaaaagaaaaatgggattggtggttgatggttaaagtggcatcatcatca 1114  T

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Target: scaffold0286 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 307
Target Start/End: Original strand, 11002 - 11046
Alignment:
Q  263 cgtgagcatgtttttcagggtttccaatcgtgacacgtttttggg 307  Q
    |||||||||||||| |||||| ||||||||||||||| |||||||    
T  11002 cgtgagcatgttttgcagggtgtccaatcgtgacacgattttggg 11046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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