View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6696_high_1 (Length: 846)
Name: NF6696_high_1
Description: NF6696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6696_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 736; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 736; E-Value: 0
Query Start/End: Original strand, 22 - 842
Target Start/End: Complemental strand, 38343234 - 38342409
Alignment:
| Q |
22 |
acaacattgatttcttcgtatagaatttgtacgggtgttacaaggcgtaagattagccatttcttgttttaattttgctctaagttatttcatatctatc |
121 |
Q |
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| T |
38343234 |
acaacattgatttcttcgtatagaatttgtacgggtgttacaaggcgtaagattagccatttcttgttttaattttgctctaagttatttcatatctatc |
38343135 |
T |
|
| Q |
122 |
atgtgattctattaataatgcaacctattttcccttgctaatgttgtagagaatgttgctgctccatcaactacttgcttaaccataggtagaatggaag |
221 |
Q |
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| T |
38343134 |
atgtgattctattaataatgcaacctattttcccttgctaatgttgtagagaatgttgctgctccatcaactacttgcttaaccataggtagaatggaag |
38343035 |
T |
|
| Q |
222 |
aactgccgaaaaaccgggaaggttcatttcttgacaccaacaaaagtttgcaagttattgataactccctagaaatcagcctaaacgtgggcttcaaaag |
321 |
Q |
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| T |
38343034 |
aactgccgaaaaaccaggaaggttcatttcttgacaccaacaaaagtttgcaagttattgataactccctagaaatcagcctaaacgtgggcttcaaaag |
38342935 |
T |
|
| Q |
322 |
cgacaatgttccaacatctgaaattccaatgcatgaataagagttgacaaattctgcagatagtctcacattggctaatt-ttttgctgcaagatgatac |
420 |
Q |
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| T |
38342934 |
cgacaatgttccaacatctgaaattccaatgcatgaataagagttgacaaattctgcagatagtcccacattggctaatttttttgctgcaagatgatac |
38342835 |
T |
|
| Q |
421 |
tgaagagaaaaatgtaaatacctgannnnnnnccttctgaataagcaaaacattgtattaatatttaataactaaatatcctgtcatcaccacagtccac |
520 |
Q |
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| T |
38342834 |
tgaagagaaaaatgtaaatacctgattttttttcttctgaataagcaaaacattgtattaatatttaataactaaatatcctgtcatcaccacagtccac |
38342735 |
T |
|
| Q |
521 |
aagtagtcctaagaaaggaaagttacagtttgattacacaaatcagtcacattgctgcacactgataaacttctgcactcagcacctcacactacactta |
620 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
38342734 |
aagtagtcctaagaaaggaaagttacagtttgattacataaatcagtcacattgctgcacactgataaacttctgcacccagcacctcacactacactta |
38342635 |
T |
|
| Q |
621 |
taccaaattcaattacaccactagaagccaaaaaacttctgcggtgtgtagcagaacag----aaccaagtatgctcacttctttctcaatcaaagaatt |
716 |
Q |
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| T |
38342634 |
taccaaattcaattgcaccactccaagccaaaaaacttctgcggtgtgtagcagaacagaaccaaccaagtatgctcacttctttctcaatcaaagaatt |
38342535 |
T |
|
| Q |
717 |
gtatccacatagatgcatcttatgaataatcacaatgacacaacttgttgtattaaatatattcaagccatcacagacaattgaattcattacatacctg |
816 |
Q |
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| T |
38342534 |
gtatccacatagatgcatcttatgaataatcacaatgacacaacttgttgtattaaatatattcaagccatcacagacaattgaattcattacataccca |
38342435 |
T |
|
| Q |
817 |
gacctatttaccacaaccatattctt |
842 |
Q |
| |
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|||||||||||||||||||| ||||| |
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| T |
38342434 |
gacctatttaccacaaccattttctt |
38342409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 202 - 323
Target Start/End: Complemental strand, 38335599 - 38335478
Alignment:
| Q |
202 |
aaccataggtagaatggaagaactgccgaaaaaccgggaaggttcatttcttgacaccaacaaaagtttgcaagttattgataactccctagaaatcagc |
301 |
Q |
| |
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|||||||||||| | |||||||||| | ||| |||||||||| |||||||||| |||||| |||||| ||||||||||||| || |||| | ||| |
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| T |
38335599 |
aaccataggtagtaacaaagaactgcctacaaatggggaaggttcttttcttgacagcaacaagagtttggaagttattgataattcattagaggttagc |
38335500 |
T |
|
| Q |
302 |
ctaaacgtgggcttcaaaagcg |
323 |
Q |
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||||||| |||||||||||||| |
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| T |
38335499 |
ctaaacgcgggcttcaaaagcg |
38335478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 331 - 440
Target Start/End: Complemental strand, 38334248 - 38334142
Alignment:
| Q |
331 |
tccaacatctgaaattccaatgcatgaataagagttgacaaattctgcagatagtctcacattggctaattttttgctgcaagatgatactgaagagaaa |
430 |
Q |
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|||||||||||||||||||| ||||||| | |||||||||||| ||||||||| |||||||||| | |||||| |||||| ||| ||| ||||||| |
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| T |
38334248 |
tccaacatctgaaattccaaggcatgaa---ggcttgacaaattctccagatagtcccacattggctgaccttttgcagcaagacgatgctggagagaaa |
38334152 |
T |
|
| Q |
431 |
aatgtaaata |
440 |
Q |
| |
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| ||||||| |
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| T |
38334151 |
gaagtaaata |
38334142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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