View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6696_high_3 (Length: 438)
Name: NF6696_high_3
Description: NF6696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6696_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 1 - 421
Target Start/End: Complemental strand, 34489542 - 34489122
Alignment:
| Q |
1 |
cttcttcacccttttaacaacctcaacctcatgttgtctcacaacaacctcttccaacaagatcaactctttcatctttttcgtcattctacagcacatg |
100 |
Q |
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| T |
34489542 |
cttcttcacccttttaacaacctcaacctcatgttgtctcacaacaacctcttccaacaagatcaactctttcatctttttcgtcattctacagcacatg |
34489443 |
T |
|
| Q |
101 |
tttctcctaaaaggatgaacaaacagataaaaaacatgagggtatttttgaagaaaggaagtaacagtgacattaagtcctataatgtttttccagcgtg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
34489442 |
tttctcctaaaaggatgaacaaacagataaaaaacatgagggtatttttgaagaaaggaagtaacagtgacattaagtcctgtaatgtttttccagcgtg |
34489343 |
T |
|
| Q |
201 |
acatgagttgaagagagacaaaagaaccacgttttcgatttgatatgaggttgcgggttttgagaacaaggctgagttttttgaagtgggttgttaattt |
300 |
Q |
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| T |
34489342 |
acatgagttgaagagagacaaaagaaccacgttttcgatttgatatgaggttgcgggttttgagaacaaggctgagttttttgaagtgggttgttaattt |
34489243 |
T |
|
| Q |
301 |
gtcaaagtgggtgtctcttattcggtcttctaaacgggtttgtgcggaaatggtgggttttttccatcgtttttggttgaagaggaaaaaaggtgagaat |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34489242 |
gtcaaagtgggtgtctcttattcggtcttctaaacgggtttgtgctgaaatggtgggttttttccatcgtttttggttgaagaggaaaaaaggtgagaat |
34489143 |
T |
|
| Q |
401 |
gatgagattgtggtggttgct |
421 |
Q |
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||||||||||||||||||||| |
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| T |
34489142 |
gatgagattgtggtggttgct |
34489122 |
T |
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