View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6696_high_5 (Length: 379)
Name: NF6696_high_5
Description: NF6696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6696_high_5 |
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| [»] scaffold0018 (2 HSPs) |
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| [»] scaffold0099 (1 HSPs) |
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Alignment Details
Target: scaffold0018 (Bit Score: 333; Significance: 0; HSPs: 2)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 1 - 372
Target Start/End: Original strand, 150802 - 151163
Alignment:
| Q |
1 |
gttagtaattgcatagaaataagaaatgcagaggagaatgtcactaatagccagcaaaaccttgtggtggttgatcttgttgatagtgtacttgctactc |
100 |
Q |
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| T |
150802 |
gttagtaattgcatagaaataagaaatgcagaggagaatgtcactaatagccagcaaaaccttgtggtggttgatcttgttgatagtgtacttgctactc |
150901 |
T |
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| Q |
101 |
attcttcatgaactattaataatgtttcaaactactgtaaaaattaatctattactgccaaatattttaagattttgaataattacttttacttagatat |
200 |
Q |
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| T |
150902 |
attcttcatgaactattaataatgtttcaaactactgtaaaaattaatctattactgccaaatattttaagattttgaataattacttttacttagat-- |
150999 |
T |
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| Q |
201 |
aaaattaatctagttgttataagatataaaatacttcaaaaatcctttaatgtaatttctatgttagctagaataaataaggttaacatgacacataatg |
300 |
Q |
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| T |
151000 |
--------tctagttgttataagatataaaatacttcaaaaatcctttaatgtaatttctatgttagctagaataaataaggttaacatgacacataatg |
151091 |
T |
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| Q |
301 |
tgccatattaattgcatgttcctttcaacactattgatagagaccttgaaatgttagacatccactccatgt |
372 |
Q |
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| T |
151092 |
tgccatattaattgcatgttcctttcaacactattgatagagaccttgaaatgttagacatccattccatgt |
151163 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 9 - 199
Target Start/End: Original strand, 142878 - 143067
Alignment:
| Q |
9 |
ttgcatagaaataagaaatgcagaggagaatgtcactaatagccagcaaaaccttgtggtggttgatcttgttgatagtgtacttgctactcattcttca |
108 |
Q |
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| T |
142878 |
ttgcacagaaacaagaaatgcagaagagaatgtcacaaatagccagcaaatcccagtggtgattgagcttgttgatagtgtactggctgctcatgcttca |
142977 |
T |
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| Q |
109 |
tgaactattaataatgtttcaaactactgtaaaaattaatctatta--ctgccaaatattttaagattttgaataattacttttacttagata |
199 |
Q |
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| T |
142978 |
tgaac-att--tcatgtttcatactactgtaaaaattagattattatgctgccaaatatttaaagatattgtataattaattttaattagata |
143067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 29 - 113
Target Start/End: Original strand, 24988872 - 24988956
Alignment:
| Q |
29 |
cagaggagaatgtcactaatagccagcaaaaccttgtggtggttgatcttgttgatagtgtacttgctactcattcttcatgaac |
113 |
Q |
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| T |
24988872 |
cagaggagaatgtcactaatagccagcaaattctagtagtggttgagtttgttgataatgtactggctgctcatgcttcatgaac |
24988956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 29 - 120
Target Start/End: Original strand, 24912191 - 24912282
Alignment:
| Q |
29 |
cagaggagaatgtcactaatagccagcaaaaccttgtggtggttgatcttgttgatagtgtacttgctactcattcttcatgaactattaat |
120 |
Q |
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| T |
24912191 |
cagaggagaatgtcactaatagccagcaaattctagtagtggttgagtttgtcgataatgtactggctgctcatgcttcatgaacaattaat |
24912282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 29 - 112
Target Start/End: Original strand, 24899945 - 24900028
Alignment:
| Q |
29 |
cagaggagaatgtcactaatagccagcaaaaccttgtggtggttgatcttgttgatagtgtacttgctactcattcttcatgaa |
112 |
Q |
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| T |
24899945 |
cagaggagaatgtcactaatagccagcaaattctagtagtggttgagtttgttgataatgtactggctgcgcatgcttcatgaa |
24900028 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0099 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0099
Description:
Target: scaffold0099; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 29 - 113
Target Start/End: Original strand, 25143 - 25228
Alignment:
| Q |
29 |
cagaggagaatgtcactaatagccagcaaaaccttgtggtgg-ttgatcttgttgatagtgtacttgctactcattcttcatgaac |
113 |
Q |
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| T |
25143 |
cagaggagaatgtcactaatagccagcaaattctagtagtggtttgagtttgttgataatgtactggctgctcatgcttcatgaac |
25228 |
T |
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