View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6696_low_14 (Length: 254)
Name: NF6696_low_14
Description: NF6696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6696_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 21 - 235
Target Start/End: Original strand, 2431297 - 2431511
Alignment:
| Q |
21 |
ttccattggctcagttcacagttatttggaagtgaatgttacataaatcgaggtggcagccgttagaagaatactatcaatgtatcctttattctatata |
120 |
Q |
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| T |
2431297 |
ttccattggctcagttcacagttatttggaagtgaatgtcacataaatcgaggtggcagccgttagaagaatactatcaatgtatcctttattctatata |
2431396 |
T |
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| Q |
121 |
ccagactggtaaagctacagtctacaatcctcatgaaaatggtaacaaaaaactagtacaaccaattttaatatataactcatatagaccatccctattt |
220 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
2431397 |
ccagactggtaaagctacagtctaaaatcctcatgaaaatggtaacaaaaaactagtacaaccaattttaatatataactcatatagaccgaccctattt |
2431496 |
T |
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| Q |
221 |
agatttttgttatta |
235 |
Q |
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|||||| || ||||| |
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| T |
2431497 |
agatttgtgctatta |
2431511 |
T |
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