View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6696_low_16 (Length: 246)
Name: NF6696_low_16
Description: NF6696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6696_low_16 |
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| [»] chr3 (4 HSPs) |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 17 - 246
Target Start/End: Original strand, 3138627 - 3138856
Alignment:
| Q |
17 |
atcaaatgaacaaaaacattgacttatggaaacaaattaaacataaaacttatttaaagtttaagtgataaatcaagatcggaagattcagaatcagaag |
116 |
Q |
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| T |
3138627 |
atcaaatgaacaaaaacattgacttatggaaacaaattaaacataaaacttatttaaagcttaagtgataaatcaagatcggaagattcagaatcagaag |
3138726 |
T |
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| Q |
117 |
gttcttcttcaatgttggactttgattgatcatgaatatcatcatcattggttgaattagaagccacaataatttgcttttccatgtttgagtttgaaat |
216 |
Q |
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| T |
3138727 |
gttcttcttcaatgttggactttgattgatcatgaatatcatcatcattggtagaattaggagccacaataatttgcttttccatgtttgagtttgaaat |
3138826 |
T |
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| Q |
217 |
tgtagcaacctttgtagaagaatctcccaa |
246 |
Q |
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| T |
3138827 |
tgtagcaacctttgtagaagaatctcccaa |
3138856 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 61 - 243
Target Start/End: Original strand, 3156406 - 3156585
Alignment:
| Q |
61 |
aaaacttatttaaagtttaagtgataaatcaagatcggaagattcagaatcagaaggttcttcttcaatgttggactttgattgatcatgaatatcatca |
160 |
Q |
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| T |
3156406 |
aaaacttatttaaagcttgagtgataaatcaagctcagatgattcagaatcagaaggttctttttcaatgttagactttgattgatcatgaat---atca |
3156502 |
T |
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| Q |
161 |
tcattggttgaattagaagccacaataatttgcttttccatgtttgagtttgaaattgtagcaacctttgtagaagaatctcc |
243 |
Q |
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| T |
3156503 |
tctttggtagaagtaggagccacaataatttgcttttctatgtttgagtttgaacttgcagcaacatttgtagaagaatctcc |
3156585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 17 - 243
Target Start/End: Complemental strand, 3167932 - 3167706
Alignment:
| Q |
17 |
atcaaatgaacaaaaacattgacttatggaaacaaattaaacataaaacttatttaaagtttaagtgataaatcaagatcggaagattcagaatcagaag |
116 |
Q |
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| T |
3167932 |
atcaaattaacaagaacattgacttatggaaacaaaataca---aaaatttaattaaagcttgagtgataaatcaagctcaaaagattcagaatcagagg |
3167836 |
T |
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| Q |
117 |
gttcttcttcaatg------ttggactttgattgatcatgaatatcatcatcattggttgaattagaagccacaataatttgcttttccatgtttgagtt |
210 |
Q |
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| T |
3167835 |
gttcttcttcattgttggacttggactttgattgatcatgaat---atcattattggaagaaataggagccacaatgatatctttttctacctttgagtt |
3167739 |
T |
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| Q |
211 |
tgaaattgtagcaacctttgtagaagaatctcc |
243 |
Q |
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|||| |||||||||| ||||||||||||||||| |
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| T |
3167738 |
tgaacttgtagcaacatttgtagaagaatctcc |
3167706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 116 - 241
Target Start/End: Complemental strand, 2023397 - 2023275
Alignment:
| Q |
116 |
ggttcttcttcaatgttggactttgattgatcatgaatatcatcatcattggttgaattagaagccacaataatttgcttttccatgtttgagtttgaaa |
215 |
Q |
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|||||||||||| ||||||| ||||||||||||||||||||||||| |||||||| | | ||||| |||||||| |||||| | ||||||||||||| |
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| T |
2023397 |
ggttcttcttcattgttggattttgattgatcatgaatatcatcat---tggttgaagtgggagccataataattttcttttctaggtttgagtttgaac |
2023301 |
T |
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| Q |
216 |
ttgtagcaacctttgtagaagaatct |
241 |
Q |
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| T |
2023300 |
ttgttgtaacatttgtagaagaatct |
2023275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 17 - 246
Target Start/End: Complemental strand, 23852794 - 23852571
Alignment:
| Q |
17 |
atcaaatgaacaaaaacattgacttatggaaacaaattaaacataaaacttatttaaagtttaagtgataaatcaagatcggaagattcagaatcagaag |
116 |
Q |
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| T |
23852794 |
atcaaattaacaataacattgacataaggaaacaaaatatg---aaaacttgtttaaagcttgagtgataaatctagctcagatgatccagaatcggaag |
23852698 |
T |
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| Q |
117 |
gttcttcttcaatgttggactttgattgatcatgaatatcatcatcattggttgaattagaagccacaataatttgcttttccatgtttgagtttgaaat |
216 |
Q |
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||||||||||| |||| ||||||||| ||||||||||| |||| | ||| ||| | | | |||||||||||||||||||||||||||||||||| | |
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| T |
23852697 |
gttcttcttcattgttagactttgatagatcatgaataccatctt---tgggagaagtgggaagcacaataatttgcttttccatgtttgagtttgaact |
23852601 |
T |
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| Q |
217 |
tgtagcaacctttgtagaagaatctcccaa |
246 |
Q |
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|||||||| |||||||||||||||||||| |
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| T |
23852600 |
tgtagcaatatttgtagaagaatctcccaa |
23852571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 61 - 246
Target Start/End: Complemental strand, 23857139 - 23856957
Alignment:
| Q |
61 |
aaaacttatttaaagtttaagtgataaatcaagatcggaagattcagaatcagaaggttcttcttcaatgttggactttgattgatcatgaatatcatca |
160 |
Q |
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||||||| ||||||| | |||||||||||||| || || ||| ||||||| ||||||| |||||||||||| ||||| ||| ||||| ||||| |||| |
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| T |
23857139 |
aaaacttgtttaaaggtagagtgataaatcaagctcagatgatccagaatcggaaggtttttcttcaatgttagacttcgatagatcacgaataccatct |
23857040 |
T |
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| Q |
161 |
tcattggttgaattagaagccacaataatttgcttttccatgtttgagtttgaaattgtagcaacctttgtagaagaatctcccaa |
246 |
Q |
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| T |
23857039 |
t---tggtagatgtaggagccacaataattttcttttctatgtttgagtttaaacttgttttaatatttgtagaagaaactcccaa |
23856957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 146
Target Start/End: Complemental strand, 1760893 - 1760815
Alignment:
| Q |
68 |
atttaaagtttaagtgataaatcaagatcggaagattcagaatcagaaggttcttcttcaatgttggactttgattgat |
146 |
Q |
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|||||||| ||||||||||||||||| | ||||||| |||| || | ||||||||||| |||| |||||||||||| |
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| T |
1760893 |
atttaaagcttaagtgataaatcaagcgcataagattccgaattggaggattcttcttcaaagttgaactttgattgat |
1760815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 162
Target Start/End: Original strand, 7490713 - 7490777
Alignment:
| Q |
98 |
gaagattcagaatcagaaggttcttcttcaatgttggactttgattgatcatgaatatcatcatc |
162 |
Q |
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| T |
7490713 |
gaagattctgaatcggagggttcttcttcaatgtttgactttgaatcatgatcagtatcatcatc |
7490777 |
T |
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