View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6696_low_19 (Length: 213)
Name: NF6696_low_19
Description: NF6696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6696_low_19 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 52180212 - 52180000
Alignment:
| Q |
1 |
tttctttcggtcaaaacaatgaaaattgtcctaatcatgtgaagataacgagagagataaagagcataagaccaaaagaaaacacgacccgatggacgaa |
100 |
Q |
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| T |
52180212 |
tttctttcggtcaaaacaatgaaaattgtcctaatcatgtgaagataacgagagagataaaaagcatatgaccaaaagaaaacacgacccgatggacgaa |
52180113 |
T |
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| Q |
101 |
tgcccaatgggaaacatagtaaccattcgaatggtgtggttcgggttcgtttccaaagccaacgagtgtcccgaacctcagcttcagcagagaaaaacat |
200 |
Q |
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| T |
52180112 |
tgcccaatgggaaacatagtaaccattcgaatggtgtggttcgggttcgtttccaaagccaacgagtgtcccgaacctcagcttcagcagagaaaaacat |
52180013 |
T |
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| Q |
201 |
gccgaaaaatatt |
213 |
Q |
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| T |
52180012 |
gccgaaaaatatt |
52180000 |
T |
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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 141
Target Start/End: Complemental strand, 6665252 - 6665178
Alignment:
| Q |
67 |
taagaccaaaagaaaacacgacccgatggacgaatgcccaatgggaaacatagtaaccattcgaatggtgtggtt |
141 |
Q |
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| T |
6665252 |
taagaccagaagaaaacacgaccagatggacgcataccaagtgggaaacaaaggaaccattcaaaaggggtggtt |
6665178 |
T |
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