View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6696_low_2 (Length: 587)
Name: NF6696_low_2
Description: NF6696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6696_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 489; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 1 - 559
Target Start/End: Complemental strand, 45523080 - 45522506
Alignment:
| Q |
1 |
aaaatgatatgatatatatacatcacctttcataatttggtcgcctcttatgcagatttcaccagattggtttcgaggtaaagatttaccagtgtcagga |
100 |
Q |
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| T |
45523080 |
aaaatgatatgatatatatacatcacctttcataatttggtcgcctcttatgcagatttcaccagattggtttcgaggtaaagatttaccagtgtcagga |
45522981 |
T |
|
| Q |
101 |
tccacaatcttcatctctgcatttcttacaacggttccacatgcacctgcttttacattcaatggttctttagcaaatgctaaactcatcgttaacactg |
200 |
Q |
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| T |
45522980 |
tccacaatcttcatctctgcatttcttacaacggttccacatgcacctgcttttacattcaatggttctttagcaaatgctaaactcatcgttaacactg |
45522881 |
T |
|
| Q |
201 |
gccctgcctcagtcattccgtatccctgtatatatcattccatttaatcatccatttataattaaactaaaagtgagcact-tttaacacttttaatagt |
299 |
Q |
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| T |
45522880 |
gccctgcctcagtcattccgtatccctgtatatatcattccatttaatcattcatttataattaaactaaaagtaagcactctttaacacttttaatagt |
45522781 |
T |
|
| Q |
300 |
aagattttagaaaaatctacataatcaat---------------acatttaacttttttgtaaaatattttctaaattttgatttcttaaagagtgtttc |
384 |
Q |
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| T |
45522780 |
aagattttagaaaaatctacataatcaatgtattgaaatttataacatttaacttttttgtgaaatattttttaaattttgatttcttaaagagtgtttc |
45522681 |
T |
|
| Q |
385 |
gggagcacccttaaaataaaaacaattgttcttgtgttgcagtaacgtattattagttcaaagacatatttatttaagcaaacaaatattccgtttaaga |
484 |
Q |
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| T |
45522680 |
ggaagcacccttaaaataaaaacaattgttcttgtgttgcagtaacatattattagttcaaagacatatttaattaagcaaacaaatattccgtttaaga |
45522581 |
T |
|
| Q |
485 |
aaatctaaattgtatctcacaaactaaactagtactaaaaaataatcatacggttatattagtttcatatactac |
559 |
Q |
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| T |
45522580 |
aaatctaaattgtatctcacaaactaaactagtactaaaaaataatcatacggttatattagtttcatatactac |
45522506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 65; Significance: 3e-28; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 25 - 229
Target Start/End: Complemental strand, 351197 - 350993
Alignment:
| Q |
25 |
acctttcataatttggtcgcctcttatgcagatttcaccagattggtttcgaggtaaagatttaccagtgtcaggatccacaatcttcatctctgcattt |
124 |
Q |
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||||||||| |||||||||||||| || || |||||||||| ||| |||| ||| ||||| || | | |||||| |||||||||||||| |||||| |
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| T |
351197 |
acctttcatgatttggtcgcctctaatacaaatttcaccaggttgatttctaggcaaagaggagtcattttgaggatcaacaatcttcatctcagcattt |
351098 |
T |
|
| Q |
125 |
cttacaacggttccacatgcacctgcttttacattcaatggttctttagcaaatgctaaactcatcgttaacactggccctgcctcagtcattccgtatc |
224 |
Q |
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|| ||||| |||||||||||||||| ||| |||| | ||| ||||||||||||| ||||| ||| ||||| ||||| ||||| |||||||| || || | |
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| T |
351097 |
ctaacaactgttccacatgcacctgatttcacatctattggctctttagcaaatgataaacacattgttaaaactggacctgcttcagtcatcccataac |
350998 |
T |
|
| Q |
225 |
cctgt |
229 |
Q |
| |
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||||| |
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| T |
350997 |
cctgt |
350993 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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