View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6696_low_20 (Length: 213)
Name: NF6696_low_20
Description: NF6696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6696_low_20 |
 | |
|
| [»] chr3 (3 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 148; Significance: 3e-78; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 1659187 - 1659403
Alignment:
| Q |
1 |
ttgcaagaagagagtaaagttgtctttgaaagcattaatcttgatgaatccaaatct-tagttaatttttctgactcaaagaagttacatggtaaaaaga |
99 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |||||| ||||||||||||| |
|
|
| T |
1659187 |
ttgcaagaagagagtaaagttgtctttgaaagcattaatcttgatgaatccaaatctcttgttaatttttctgactca--gaagtttcatggtaaaaaga |
1659284 |
T |
|
| Q |
100 |
aacctcttttttcttatggt-----gagcgggctttgcaccttttatggacgttaaggtcacattgtagatacttgctataagaagcattgatttccacc |
194 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||| | ||||||||||||||||||||||||| |||||||||||| |||||||||| |
|
|
| T |
1659285 |
aacctcttttttcttatggttataagagcgggctttgcaccttttatgcatgttaaggtcacattgtagatacttgttataagaagcatggatttccacc |
1659384 |
T |
|
| Q |
195 |
aaactttgattgaatttct |
213 |
Q |
| |
|
|||||||| | |||||||| |
|
|
| T |
1659385 |
aaactttggtcgaatttct |
1659403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 95
Target Start/End: Original strand, 28062598 - 28062687
Alignment:
| Q |
4 |
caagaagagagtaaagttgtctttgaaagcattaatcttgatgaatccaaatcttagttaatttttctgactcaaagaagttacatggtaaa |
95 |
Q |
| |
|
|||||||||||||||| ||| |||||||| |||||||||||||||||| |||| | ||||| | |||| ||||||||||| | ||||||| |
|
|
| T |
28062598 |
caagaagagagtaaagatgtgtttgaaag-tgtaatcttgatgaatccaactctt-gataattctgctgattcaaagaagttccctggtaaa |
28062687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 95
Target Start/End: Original strand, 28073023 - 28073112
Alignment:
| Q |
4 |
caagaagagagtaaagttgtctttgaaagcattaatcttgatgaatccaaatcttagttaatttttctgactcaaagaagttacatggtaaa |
95 |
Q |
| |
|
|||||||||||||||| ||| |||||||| |||||||||||||||||| |||| | ||||| | |||| ||||||||||| | ||||||| |
|
|
| T |
28073023 |
caagaagagagtaaagatgtgtttgaaag-tgtaatcttgatgaatccaactctt-gataattctgctgattcaaagaagttccctggtaaa |
28073112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University