View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6696_low_6 (Length: 430)
Name: NF6696_low_6
Description: NF6696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6696_low_6 |
 | |
|
| [»] scaffold0125 (2 HSPs) |
| | |
|
| [»] scaffold0267 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 3 - 202
Target Start/End: Original strand, 20940257 - 20940456
Alignment:
| Q |
3 |
gaaagaatttttaacataacgtaacttcgcctgtaaccgtttcatgccctgcccgctaacacctttagaccaagcttcagtcaccaacttgcgacaatcc |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20940257 |
gaaagaatttttaacataacgtaacttcgcctgtaaccgtttcatgccctgcccgctaacacctttagaccaagcttcagtcaccaacttgcgacaatcc |
20940356 |
T |
|
| Q |
103 |
tcatgggcagtccaaactttaaagaatttgaaaggactggaatgttgtacagttgagaaaataagagatagtaaaagcggatggtggtcagattggtgtc |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20940357 |
tcatgggcagtccaaactttaaagaatttgaaaggactggaatgttgtacagttgagaaaataagagatagtaaaagcggatggtggtcagattggtgtc |
20940456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 3 - 199
Target Start/End: Original strand, 25974456 - 25974652
Alignment:
| Q |
3 |
gaaagaatttttaacataacgtaacttcgcctgtaaccgtttcatgccctgcccgctaacacctttagaccaagcttcagtcaccaacttgcgacaatcc |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25974456 |
gaaagaatttttaacataacgtaacttcgcctgtaaccgtttcatgccctgcccgctaacacctttagaccaagcttcagtcaccaacttgcgacaatcc |
25974555 |
T |
|
| Q |
103 |
tcatgggcagtccaaactttaaagaatttgaaaggactggaatgttgtacagttgagaaaataagagatagtaaaagcggatggtggtcagattggt |
199 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25974556 |
tcatgggaagtccaaactttaaagaatttgaaaggactggaatgctgtacagttgagaaaataagagatagtaaaagcggatggtggtcagattggt |
25974652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 3 - 202
Target Start/End: Complemental strand, 20389440 - 20389241
Alignment:
| Q |
3 |
gaaagaatttttaacataacgtaacttcgcctgtaaccgtttcatgccctgcccgctaacacctttagaccaagcttcagtcaccaacttgcgacaatcc |
102 |
Q |
| |
|
|||||||||||||| || ||||||||| |||||||||| |||||||||| || |||||| | ||||||||| ||||||||||||| || | ||| ||| |
|
|
| T |
20389440 |
gaaagaatttttaatattacgtaacttatcctgtaaccgcgtcatgccctgacctctaacatccttagaccaaacttcagtcaccaattttctacagtcc |
20389341 |
T |
|
| Q |
103 |
tcatgggcagtccaaactttaaagaatttgaaaggactggaatgttgtacagttgagaaaataagagatagtaaaagcggatggtggtcagattggtgtc |
202 |
Q |
| |
|
|||| | |||||||| ||||||||||||||||| |||| ||||||||||||||||||| |||||| |||| || |||||| ||||||||||| |||| |
|
|
| T |
20389340 |
acatgtgatgtccaaaccttaaagaatttgaaagggctggcgtgttgtacagttgagaaaacaagagaaagtagaatcggatgatggtcagattgatgtc |
20389241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 249 - 355
Target Start/End: Original strand, 33637156 - 33637262
Alignment:
| Q |
249 |
caatacatctcttaaaataaagt-tggcgcaaatgaaattaatagctagtggtgaaatataaattaactaagtaataactaatataaaattaaaagatct |
347 |
Q |
| |
|
|||| ||| |||||||||||| | ||| ||||||||||| |||||| ||||| | |||||||||||||| | ||||||||| ||||||||||||| |||| |
|
|
| T |
33637156 |
caatgcatatcttaaaataaactatggagcaaatgaaatcaatagcaagtggaggaatataaattaactca-taataactagtataaaattaaaatatct |
33637254 |
T |
|
| Q |
348 |
ccatccaa |
355 |
Q |
| |
|
||||||| |
|
|
| T |
33637255 |
tcatccaa |
33637262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0125 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: scaffold0125
Description:
Target: scaffold0125; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 67 - 194
Target Start/End: Original strand, 38572 - 38699
Alignment:
| Q |
67 |
ttagaccaagcttcagtcaccaacttgcgacaatcctcatgggcagtccaaactttaaagaatttgaaaggactggaatgttgtacagttgagaaaataa |
166 |
Q |
| |
|
||||||||| ||||||||||||| || ||||| ||| |||||| |||||||| ||||||||||||||||| |||| ||||| |||| ||||||| || |
|
|
| T |
38572 |
ttagaccaaacttcagtcaccaatttccgacagtccacatgggatgtccaaaccttaaagaatttgaaagggctggcgtgttgaacagaggagaaaacaa |
38671 |
T |
|
| Q |
167 |
gagatagtaaaagcggatggtggtcaga |
194 |
Q |
| |
|
| || || ||||| |||||||| ||||| |
|
|
| T |
38672 |
gggagagcaaaagaggatggtgatcaga |
38699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0125; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 67 - 167
Target Start/End: Original strand, 27013 - 27113
Alignment:
| Q |
67 |
ttagaccaagcttcagtcaccaacttgcgacaatcctcatgggcagtccaaactttaaagaatttgaaaggactggaatgttgtacagttgagaaaataa |
166 |
Q |
| |
|
||||||||| || |||||||||| || ||||| ||| |||| | |||||||| ||||||||||||||||| |||| |||||| ||| |||||||||| |
|
|
| T |
27013 |
ttagaccaaactccagtcaccaatttccgacagtccacatgtgatgtccaaaccttaaagaatttgaaagggctggcatgttgagcagaggagaaaataa |
27112 |
T |
|
| Q |
167 |
g |
167 |
Q |
| |
|
| |
|
|
| T |
27113 |
g |
27113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 67 - 194
Target Start/End: Original strand, 14677713 - 14677840
Alignment:
| Q |
67 |
ttagaccaagcttcagtcaccaacttgcgacaatcctcatgggcagtccaaactttaaagaatttgaaaggactggaatgttgtacagttgagaaaataa |
166 |
Q |
| |
|
||||||||| ||||||||||||| || ||||| ||| |||| | |||||||| ||||||||||||||||| |||| ||||| |||| ||||||| || |
|
|
| T |
14677713 |
ttagaccaaacttcagtcaccaaattccgacagtccacatgtgatgtccaaaccttaaagaatttgaaagggctggcgtgttgaacagaggagaaaacaa |
14677812 |
T |
|
| Q |
167 |
gagatagtaaaagcggatggtggtcaga |
194 |
Q |
| |
|
| || || ||||| ||||| || ||||| |
|
|
| T |
14677813 |
gggagagcaaaagaggatgctgatcaga |
14677840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 365 - 426
Target Start/End: Complemental strand, 3838356 - 3838295
Alignment:
| Q |
365 |
tttgatcctacaattaggaataagtacaatgaaatcatacaacaacatagtcatactatcta |
426 |
Q |
| |
|
|||||||| |||| ||| |||||||||||||||||||| || ||| ||||||| |||||||| |
|
|
| T |
3838356 |
tttgatccaacaactagcaataagtacaatgaaatcatccagcaaaatagtcaaactatcta |
3838295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0267 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0267
Description:
Target: scaffold0267; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 365 - 426
Target Start/End: Complemental strand, 13837 - 13776
Alignment:
| Q |
365 |
tttgatcctacaattaggaataagtacaatgaaatcatacaacaacatagtcatactatcta |
426 |
Q |
| |
|
|||||||| |||| ||| || ||||||||||||||||| |||||| ||||||| |||||||| |
|
|
| T |
13837 |
tttgatccaacaactagcaacaagtacaatgaaatcatccaacaaaatagtcaaactatcta |
13776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University