View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6696_low_8 (Length: 332)

Name: NF6696_low_8
Description: NF6696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6696_low_8
NF6696_low_8
[»] chr3 (4 HSPs)
chr3 (12-328)||(3138927-3139243)
chr3 (12-325)||(3156662-3156957)
chr3 (12-233)||(2022865-2023086)
chr3 (12-235)||(3167313-3167536)
[»] chr8 (2 HSPs)
chr8 (12-313)||(23852199-23852482)
chr8 (12-113)||(23856767-23856868)
[»] chr7 (3 HSPs)
chr7 (27-150)||(7491113-7491236)
chr7 (35-203)||(9011903-9012074)
chr7 (27-150)||(7498834-7498957)
[»] chr5 (6 HSPs)
chr5 (106-235)||(1744522-1744651)
chr5 (230-281)||(1725128-1725182)
chr5 (230-300)||(1724723-1724796)
chr5 (27-74)||(1763480-1763527)
chr5 (28-70)||(1760161-1760203)
chr5 (183-235)||(1739256-1739308)


Alignment Details
Target: chr3 (Bit Score: 297; Significance: 1e-167; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 12 - 328
Target Start/End: Complemental strand, 3139243 - 3138927
Alignment:
Q  12 ggacatcagaacgcgcataaggcggaacgggcgttagaaaagcaacgtcaacaaaggtatgatggtggtgctttaagttttgggcaaccttactttaatc 111  Q
    |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||    
T  3139243 ggacatcagaacgcacataaggcggaacgggcattagaaaagcaacgtcaacaaaggtatgatggtagtgctttaagttttgggcagccttactttaatc 3139144  T
Q  112 cttatcttagttatccaagtactctttttacaccttatagttataggtcacttggggttagatccgagtcaatgattcaaaaaccaccttattttaaccc 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  3139143 cttatcttagttatccaagtactctttttacaccttatagttataggtcacttggggttagatcagagtcaatgattcaaaaaccaccttattttaaccc 3139044  T
Q  212 tagaattactccacatagttttgggtatagtcatagtgctttgttgcaagagatgttaaacccttctcttgtgtcattgagaaatatgggggttggtaat 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3139043 tagaattactccacatagttttgggtatagtcatagtgctttgttgcaagagatgttaaacccttctcttgtgtcattgagaaatatgggggttggtaat 3138944  T
Q  312 agcgtgattggaaatct 328  Q
    |||||||||||||||||    
T  3138943 agcgtgattggaaatct 3138927  T

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Target: chr3; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 12 - 325
Target Start/End: Complemental strand, 3156957 - 3156662
Alignment:
Q  12 ggacatcagaacgcgcataaggcggaacgggcgttagaaaagcaacgtcaacaaaggtatgatggtggtgctttaagttttgggcaaccttactttaatc 111  Q
    ||||| |||||||| |||||||||||||| || ||||||||||||||  |||||||||||||||   |||||| |||||| |||||| |||||||| |||    
T  3156957 ggacaccagaacgctcataaggcggaacgtgctttagaaaagcaacggaaacaaaggtatgatgacagtgcttcaagtttggggcaatcttacttttatc 3156858  T
Q  112 cttatcttagttatccaagtactctttttacaccttatagttataggtcacttggggttagatccgagtcaatgattcaaaaaccaccttattttaaccc 211  Q
    ||                  |||||||||  ||||||   |||||||||||| ||||| ||| ||||||||||||||||||||||||||||| ||| |||    
T  3156857 ct------------------actctttttcgaccttacgattataggtcactcggggtcagaaccgagtcaatgattcaaaaaccaccttatattagccc 3156776  T
Q  212 tagaattactccacatagttttgggtatagtcatagtgctttgttgcaagagatgttaaacccttctcttgtgtcattgagaaatatgggggttggtaat 311  Q
    ||  ||||| ||||| |||||||||||  ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||||     
T  3156775 taagattaccccacacagttttgggtaccgtcatagtgctttgttgcaagagatcttaaacccttctcttgtgtcattgagaaatatgaggggtggtaac 3156676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 12 - 233
Target Start/End: Original strand, 2022865 - 2023086
Alignment:
Q  12 ggacatcagaacgcgcataaggcggaacgggcgttagaaaagcaacgtcaacaaaggtatgatggtggtgctttaagttttgggcaaccttactttaatc 111  Q
    ||||| ||||| || |||||||| |||||  |||||||||| |||||| |||||||||||||  ||||||||||  |||| ||||||||| ||||||| |    
T  2022865 ggacaccagaatgcccataaggctgaacgtacgttagaaaaacaacgtaaacaaaggtatgaaagtggtgcttttggtttagggcaacctcactttaacc 2022964  T
Q  112 cttatcttagttatccaagtactctttttacaccttatagttataggtcacttggggttagatccgagtcaatgattcaaaaaccaccttattttaaccc 211  Q
    ||||| |||||||||||||||||||||||||||    |  || |||  || |||||  ||||   || || |||||||||||||||| || | |||||||    
T  2022965 cttattttagttatccaagtactctttttacacgcccttattttagcgcaattgggactagaatggaatccatgattcaaaaaccactttttattaaccc 2023064  T
Q  212 tagaattactccacatagtttt 233  Q
    ||||||||||||||||||||||    
T  2023065 tagaattactccacatagtttt 2023086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 12 - 235
Target Start/End: Original strand, 3167313 - 3167536
Alignment:
Q  12 ggacatcagaacgcgcataaggcggaacgggcgttagaaaagcaacgtcaacaaaggtatgatggtggtgctttaagttttgggcaaccttactttaatc 111  Q
    ||||||||||| || |||||||| ||||| || |||||||| |||||| |||||| ||||||   ||||| |||  |||| ||||||||||||||||| |    
T  3167313 ggacatcagaatgcccataaggctgaacgtgccttagaaaaacaacgtaaacaaaagtatgaaaatggtgtttttggtttagggcaaccttactttaacc 3167412  T
Q  112 cttatcttagttatccaagtactctttttacaccttatagttataggtcacttggggttagatccgagtcaatgattcaaaaaccaccttattttaaccc 211  Q
    ||||| |||||||||||| ||||||||||||||| | |  ||||| |   |||||   ||||   || || ||||||||||| ||| ||||| |||||||    
T  3167413 cttattttagttatccaaatactctttttacaccctcttattataaggggcttggaactagaatggaatccatgattcaaaagccatcttatattaaccc 3167512  T
Q  212 tagaattactccacatagttttgg 235  Q
    ||| ||||||||||||||||||||    
T  3167513 taggattactccacatagttttgg 3167536  T

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Target: chr8 (Bit Score: 99; Significance: 8e-49; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 12 - 313
Target Start/End: Original strand, 23852199 - 23852482
Alignment:
Q  12 ggacatcagaacgcgcataaggcggaacgggcgttagaaaagcaacgtcaacaaaggtatgatggtggtgctttaagttttgggcaaccttactttaatc 111  Q
    ||||| |||||||| ||||||||||||||  | ||||||||||||||  ||||||||||||||| ||||| |||| |||| |||||| ||||||||||      
T  23852199 ggacaccagaacgctcataaggcggaacgtactttagaaaagcaacggaaacaaaggtatgatgatggtgttttaggtttagggcaatcttactttaact 23852298  T
Q  112 cttatcttagttatccaagtactctttttacaccttatagttataggtcacttggggttagatccgagtcaatgattcaaaaaccaccttattttaaccc 211  Q
    ||                  |||||||||  |||||||  |||||||||| | ||| ||||| |||||||||||||||||||||||| |||||||| |||    
T  23852299 ct------------------actctttttcgaccttatgattataggtcaatcgggattagaaccgagtcaatgattcaaaaaccacattattttagccc 23852380  T
Q  212 tagaattactccacatagttttgggtatagtcatagtgctttgttgcaagagatgttaaacccttctcttgtgtcattgagaaatatgggggttggtaat 311  Q
    ||  ||||| ||||| ||||||||||| || |||||||||||||||||||| || ||||| |||||||| |||||||||||||||||||||| | |||||    
T  23852381 taagattaccccacacagttttgggtacagccatagtgctttgttgcaagatatcttaaatccttctctcgtgtcattgagaaatatggggggtagtaat 23852480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 113
Target Start/End: Original strand, 23856767 - 23856868
Alignment:
Q  12 ggacatcagaacgcgcataaggcggaacgggcgttagaaaagcaacgtcaacaaaggtatgatggtggtgctttaagttttgggcaaccttactttaatc 111  Q
    ||||| |||||||| |||||| ||||||   | ||||||||||||||  ||||||| ||||||| |||| ||||| ||||   | || ||||||||||||    
T  23856767 ggacaccagaacgctcataagacggaacatactttagaaaagcaacgcaaacaaagatatgatgatggtactttaggtttaaagaaatcttactttaatc 23856866  T
Q  112 ct 113  Q
    ||    
T  23856867 ct 23856868  T

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Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 27 - 150
Target Start/End: Complemental strand, 7491236 - 7491113
Alignment:
Q  27 cataaggcggaacgggcgttagaaaagcaacgtcaacaaaggtatgatggtggtgctttaagttttgggcaaccttactttaatccttatcttagttatc 126  Q
    |||||||||||||| ||||| ||||| |||||| || |||||||||||| |||||||||| |||| |||||| || ||||||| |||||| | | ||||     
T  7491236 cataaggcggaacgtgcgttggaaaaacaacgtaaagaaaggtatgatgctggtgctttaggtttagggcaatctcactttaaaccttatttcaattatt 7491137  T
Q  127 caagtactctttttacaccttata 150  Q
    | ||||||||||||||||||||||    
T  7491136 ctagtactctttttacaccttata 7491113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 35 - 203
Target Start/End: Complemental strand, 9012074 - 9011903
Alignment:
Q  35 ggaacgggcgttagaaaagcaacgtcaacaaaggtatgatggtggtgctttaagttttgggcaacct---tactttaatccttatcttagttatccaagt 131  Q
    |||||| || || ||||||||| |||||||||||||||||     | ||||| |||| |||||||||   |  ||||| |||||| |||||||||  |||    
T  9012074 ggaacgtgcatttgaaaagcaatgtcaacaaaggtatgatcaaaatcctttaggtttggggcaacctccttcttttaacccttattttagttatcgtagt 9011975  T
Q  132 actctttttacaccttatagttataggtcacttggggttagatccgagtcaatgattcaaaaaccaccttat 203  Q
    ||||||||||||||||||| |||||||  ||  |||||||||   || ||||||||||||||||||||||||    
T  9011974 actctttttacaccttataattataggctacccggggttagaatggaatcaatgattcaaaaaccaccttat 9011903  T

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Target: chr7; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 27 - 150
Target Start/End: Complemental strand, 7498957 - 7498834
Alignment:
Q  27 cataaggcggaacgggcgttagaaaagcaacgtcaacaaaggtatgatggtggtgctttaagttttgggcaaccttactttaatccttatcttagttatc 126  Q
    |||||||| ||||| || || ||||| ||||   || |||||||||||| |||||||||| |||| |||||| || ||||||| |||||| | | ||||     
T  7498957 cataaggcagaacgtgcattggaaaaacaactaaaagaaaggtatgatgctggtgctttaggtttagggcaatctcactttaaaccttatttaaattatt 7498858  T
Q  127 caagtactctttttacaccttata 150  Q
    | ||||||||||||||||||||||    
T  7498857 ctagtactctttttacaccttata 7498834  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 106 - 235
Target Start/End: Original strand, 1744522 - 1744651
Alignment:
Q  106 ttaatccttatcttagttatccaagtactctttttacaccttatagttataggtcacttggggttagatccgagtcaatgattcaaaaaccaccttattt 205  Q
    |||| |||||| ||||||||||||  ||||||||||||||   || |||| || |||| || ||||||   || || ||||||||||||||| ||||| |    
T  1744522 ttaacccttattttagttatccaaacactctttttacaccccctaattatggggcactcggtgttagaatggaatctatgattcaaaaaccatcttatat 1744621  T
Q  206 taaccctagaattactccacatagttttgg 235  Q
    ||||||  | ||||| |||||| |||||||    
T  1744622 taaccccgggattaccccacatggttttgg 1744651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 281
Target Start/End: Original strand, 1725128 - 1725182
Alignment:
Q  230 ttttgggtatagtcatagtgctttgt---tgcaagagatgttaaacccttctctt 281  Q
    ||||||||||||| || |||||||||   ||||||||||||||||||||||||||    
T  1725128 ttttgggtatagtaatggtgctttgtgtttgcaagagatgttaaacccttctctt 1725182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 230 - 300
Target Start/End: Original strand, 1724723 - 1724796
Alignment:
Q  230 ttttgggtatagtcatagtgctttg---ttgcaagagatgttaaacccttctcttgtgtcattgagaaatatgg 300  Q
    ||||||||||| | || ||||||||   |||||||||||||||||||||||||||||    |||||||||||||    
T  1724723 ttttgggtataataatggtgctttgggtttgcaagagatgttaaacccttctcttgttagtttgagaaatatgg 1724796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 27 - 74
Target Start/End: Complemental strand, 1763527 - 1763480
Alignment:
Q  27 cataaggcggaacgggcgttagaaaagcaacgtcaacaaaggtatgat 74  Q
    |||||||||||||  || ||||||||||||||| ||||||||||||||    
T  1763527 cataaggcggaacatgcattagaaaagcaacgtaaacaaaggtatgat 1763480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 70
Target Start/End: Original strand, 1760161 - 1760203
Alignment:
Q  28 ataaggcggaacgggcgttagaaaagcaacgtcaacaaaggta 70  Q
    ||||||||||||| || ||||||||||||||| ||||||||||    
T  1760161 ataaggcggaacgtgcattagaaaagcaacgtaaacaaaggta 1760203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 183 - 235
Target Start/End: Original strand, 1739256 - 1739308
Alignment:
Q  183 atgattcaaaaaccaccttattttaaccctagaattactccacatagttttgg 235  Q
    ||||||||||||||| ||||| |||||||||| ||| | |||||| |||||||    
T  1739256 atgattcaaaaaccatcttatattaaccctaggattgccccacatggttttgg 1739308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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