View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6696_low_9 (Length: 306)
Name: NF6696_low_9
Description: NF6696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6696_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 16 - 287
Target Start/End: Original strand, 41866304 - 41866575
Alignment:
| Q |
16 |
ggacatcacgctcattccataatttccctccactctcaactcctcaccggagcaacaaccgtcaaacttctccgaccaccgtcccacctcaatcgccact |
115 |
Q |
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| T |
41866304 |
ggacatcacgctcattccataatttccctccactctcaactcctcaccggagcaacaaccgtcaaacttctccgaccaccgtacaacctcaatcgccact |
41866403 |
T |
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| Q |
116 |
cgccggagaagtttctgaaaccgcgtaatcgaacgattcggagtagtgacggcgatggctgattcagacaatgaatccggaggagcaccgaacgccggca |
215 |
Q |
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| T |
41866404 |
cgccggagaagtttctgaaaccgcgtaatcgaacgattcggagtagtgacggcgatggctgattcagacaatgaatccggaggagcaccgaacgccggca |
41866503 |
T |
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| Q |
216 |
acagcgagttatcaccacgagaacaagaccgatttttaccaatagcaaacgtgagcagaataatgaagaagg |
287 |
Q |
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| T |
41866504 |
acagcgagttatcaccacgagaacaagaccgatttttaccaatagcaaacgtgagcagaataatgaagaagg |
41866575 |
T |
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Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 218 - 282
Target Start/End: Original strand, 23569664 - 23569728
Alignment:
| Q |
218 |
agcgagttatcaccacgagaacaagaccgatttttaccaatagcaaacgtgagcagaataatgaa |
282 |
Q |
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|||||| | |||||||||||||||||||||||| | |||||||||||||| ||||| || ||||| |
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| T |
23569664 |
agcgagatgtcaccacgagaacaagaccgatttcttccaatagcaaacgtaagcaggatcatgaa |
23569728 |
T |
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