View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6697_high_1 (Length: 441)

Name: NF6697_high_1
Description: NF6697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6697_high_1
NF6697_high_1
[»] chr7 (9 HSPs)
chr7 (10-435)||(15249503-15249928)
chr7 (10-435)||(14802511-14802934)
chr7 (181-270)||(40230898-40230987)
chr7 (181-271)||(19468323-19468412)
chr7 (181-271)||(33540093-33540183)
chr7 (181-271)||(38190265-38190355)
chr7 (181-271)||(44767320-44767410)
chr7 (181-271)||(39608149-39608239)
chr7 (181-271)||(27224282-27224370)
[»] chr5 (6 HSPs)
chr5 (170-433)||(17535599-17535864)
chr5 (181-276)||(27246228-27246323)
chr5 (181-276)||(11245395-11245491)
chr5 (10-82)||(17535916-17535985)
chr5 (181-271)||(22868047-22868137)
chr5 (346-410)||(28322240-28322305)
[»] chr8 (10 HSPs)
chr8 (181-271)||(44004316-44004406)
chr8 (181-276)||(13751434-13751530)
chr8 (181-271)||(9946725-9946815)
chr8 (171-271)||(31661311-31661411)
chr8 (181-271)||(24534906-24534996)
chr8 (181-249)||(6976584-6976652)
chr8 (181-271)||(21466885-21466975)
chr8 (181-271)||(33474617-33474707)
chr8 (187-257)||(1738683-1738753)
chr8 (289-325)||(42156450-42156486)
[»] chr1 (10 HSPs)
chr1 (170-273)||(29864666-29864769)
chr1 (181-271)||(26687691-26687781)
chr1 (182-271)||(9672504-9672593)
chr1 (181-271)||(24892008-24892098)
chr1 (181-271)||(50509797-50509887)
chr1 (181-271)||(23688380-23688470)
chr1 (181-271)||(5882526-5882616)
chr1 (181-271)||(7380372-7380462)
chr1 (174-257)||(27565026-27565107)
chr1 (227-271)||(17387795-17387839)
[»] chr6 (10 HSPs)
chr6 (181-276)||(7201116-7201211)
chr6 (175-270)||(17364243-17364337)
chr6 (181-271)||(1112493-1112583)
chr6 (181-271)||(26497851-26497942)
chr6 (171-269)||(29288418-29288516)
chr6 (181-273)||(28847763-28847855)
chr6 (181-342)||(10669975-10670138)
chr6 (181-271)||(609616-609706)
chr6 (181-271)||(1522613-1522705)
chr6 (295-344)||(1722127-1722176)
[»] chr2 (7 HSPs)
chr2 (181-271)||(26290429-26290519)
chr2 (182-271)||(30707048-30707137)
chr2 (181-271)||(2104095-2104185)
chr2 (181-271)||(5868979-5869069)
chr2 (14-82)||(30706859-30706927)
chr2 (181-276)||(44259816-44259912)
chr2 (181-271)||(18242144-18242234)
[»] scaffold0125 (1 HSPs)
scaffold0125 (183-271)||(5771-5859)
[»] chr4 (8 HSPs)
chr4 (182-270)||(6166387-6166475)
chr4 (181-276)||(6087041-6087136)
chr4 (182-271)||(16061450-16061539)
chr4 (181-271)||(6131962-6132052)
chr4 (181-271)||(32727972-32728062)
chr4 (181-271)||(38138770-38138860)
chr4 (187-271)||(18886184-18886268)
chr4 (181-258)||(36441098-36441174)
[»] chr3 (5 HSPs)
chr3 (181-273)||(42624767-42624859)
chr3 (181-276)||(54561112-54561207)
chr3 (209-271)||(7741874-7741935)
chr3 (295-343)||(35202631-35202679)
chr3 (299-343)||(4207268-4207312)


Alignment Details
Target: chr7 (Bit Score: 322; Significance: 0; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 10 - 435
Target Start/End: Original strand, 15249503 - 15249928
Alignment:
Q  10 gacatcagacccgttctttggggagtgtaaactgttcaactgagttggacctccaaaagtgatgagcgtcaagnnnnnnngagtattgaccaatatccac 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||    
T  15249503 gacatcagacccgttctttggggagtgtaaactgttcaactgagttggacctccaaaagtgatgagcgtcaagaaaaaaagagtattgaccaatatccac 15249602  T
Q  110 ccccactcaaagaaagnnnnnnnnnccatgttccatatttctatatctaattnnnnnnntatgttccttattaaaaataattgttaattttgatttcgat 209  Q
    ||||||||||||||||         |||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||    
T  15249603 ccccactcaaagaaagaaaaaaaaaccatgttccatatttctatatctaattaaaaaaatatgttccttattaaaaataattgttaattttgatttcgat 15249702  T
Q  210 ggctaatagtcattatacggatgttaatttcaatttaaataaaagatttctcttttaaaaaattgtgnnnnnnnnnatatggggtctatttttattatga 309  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||    
T  15249703 ggctaatagtcattatacggatgttaatttcaatttaaataaaagatttctcttttaaaaaattgtgtttttttttatatggggtctatttttattatga 15249802  T
Q  310 gagtcgaacctccaatctcatagggacgaccctgaccgacactacaccaatacatgtgattatattcaattatgtcagatttcaaattataactagtgtc 409  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15249803 gagccgaacctccaatctcatagggacgaccctgaccgacactacaccaatacatgtgattatattcaattatgtcagatttcaaattataactagtgtc 15249902  T
Q  410 gtcatgtcattgtgtctgatgtccat 435  Q
    |||||||||||||||||| |||||||    
T  15249903 gtcatgtcattgtgtctggtgtccat 15249928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 10 - 435
Target Start/End: Original strand, 14802511 - 14802934
Alignment:
Q  10 gacatcagacccgttctttggggagtgtaaactgttcaactgagttggacctccaaaagtgatgagcgtcaagnnnnnnngagtattgaccaatatccac 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||    
T  14802511 gacatcagacccgttctttggggagtgtaaactgttcaactgagttggacctccaaaagtgatgagcgtcaagaaaaaaagagtattgaccaatatccac 14802610  T
Q  110 ccccactcaaagaaagnnnnnnnnnccatgttccatatttctatatctaattnnnnnnntatgttccttattaaaaataattgttaattttgatttcgat 209  Q
    ||||||||||||||||         |||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||    
T  14802611 ccccactcaaagaaagaaaaaaaa-ccatgttccatatttctatatctaattaaaaaaatatgttccttattaaaaataattgttaattttgatttcgat 14802709  T
Q  210 ggctaatagtcattatacggatgttaatttcaatttaaataaaagatttctcttttaaaaaattgtgnnnnnnnnnatatggggtctatttttattatga 309  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||    
T  14802710 ggctaatagtcattatacggatgttaatttcaatttaaataaaagatttctcttttaaaaaattgtgtttttttt-atatggggtctatttttattatga 14802808  T
Q  310 gagtcgaacctccaatctcatagggacgaccctgaccgacactacaccaatacatgtgattatattcaattatgtcagatttcaaattataactagtgtc 409  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14802809 gagccgaacctccaatctcatagggacgaccctgaccgacactacaccaatacatgtgattatattcaattatgtcagatttcaaattataactagtgtc 14802908  T
Q  410 gtcatgtcattgtgtctgatgtccat 435  Q
    |||||||||||||||||| |||||||    
T  14802909 gtcatgtcattgtgtctggtgtccat 14802934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 181 - 270
Target Start/End: Original strand, 40230898 - 40230987
Alignment:
Q  181 taaaaataattgttaattttgatttcgatggctaatagtcattatacggatgttaatttcaatttaaataaaagatttctcttttaaaaa 270  Q
    ||||||||||||||||||||||||||| ||||||||| ||||||||||  ||||| | |||||||||||| ||||||  |||||||||||    
T  40230898 taaaaataattgttaattttgatttcggtggctaataatcattatacgagtgttattctcaatttaaatagaagattaatcttttaaaaa 40230987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 181 - 271
Target Start/End: Complemental strand, 19468412 - 19468323
Alignment:
Q  181 taaaaataattgttaattttgatttcgatggctaatagtcattatacggatgttaatttcaatttaaataaaagatttctcttttaaaaaa 271  Q
    |||||||||||| ||||||  |||| | ||||||||| |||||||||| |||||| |||||||||||||||||||||  ||||||||||||    
T  19468412 taaaaataattgctaatttatatttgg-tggctaataatcattatacgaatgttattttcaatttaaataaaagattaatcttttaaaaaa 19468323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 181 - 271
Target Start/End: Complemental strand, 33540183 - 33540093
Alignment:
Q  181 taaaaataattgttaattttgatttcgatggctaatagtcattatacggatgttaatttcaatttaaataaaagatttctcttttaaaaaa 271  Q
    |||||||||||| |||||||||||||  ||| ||||  ||||||||||  ||||| |||||||||||||| ||||||  ||||||||||||    
T  33540183 taaaaataattgctaattttgatttcagtggttaatcatcattatacgagtgttattttcaatttaaatagaagattaatcttttaaaaaa 33540093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 181 - 271
Target Start/End: Complemental strand, 38190355 - 38190265
Alignment:
Q  181 taaaaataattgttaattttgatttcgatggctaatagtcattatacggatgttaatttcaatttaaataaaagatttctcttttaaaaaa 271  Q
    |||||||||||  |||||||||||| | ||||||||| ||||||||||  ||||| |||||||||||||| || |||  ||||||||||||    
T  38190355 taaaaataatttctaattttgattttggtggctaataatcattatacgagtgttattttcaatttaaatagaatattaatcttttaaaaaa 38190265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 181 - 271
Target Start/End: Complemental strand, 44767410 - 44767320
Alignment:
Q  181 taaaaataattgttaattttgatttcgatggctaatagtcattatacggatgttaatttcaatttaaataaaagatttctcttttaaaaaa 271  Q
    |||||||||||| |||||||||||||| |  |||||| ||||||||||  ||||| |||||||||||||| ||||||  |||| |||||||    
T  44767410 taaaaataattgctaattttgatttcggtaactaataatcattatacgagtgttattttcaatttaaatagaagattaatcttataaaaaa 44767320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 181 - 271
Target Start/End: Original strand, 39608149 - 39608239
Alignment:
Q  181 taaaaataattgttaattttgatttcgatggctaatagtcattatacggatgttaatttcaatttaaataaaagatttctcttttaaaaaa 271  Q
    |||||||||||||||||||| |||||| |||||||||   |||||||   ||||| |||||||||||||| ||||||  ||| ||||||||    
T  39608149 taaaaataattgttaattttaatttcggtggctaataacaattataccagtgttattttcaatttaaatagaagattaatctcttaaaaaa 39608239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 181 - 271
Target Start/End: Complemental strand, 27224370 - 27224282
Alignment:
Q  181 taaaaataattgttaattttgatttcgatggctaatagtcattatacggatgttaatttcaatttaaataaaagatttctcttttaaaaaa 271  Q
    |||||||||||| |||||||||||||| || |||||| ||||||||||  ||||| ||||  |||||||| ||||||  |||| |||||||    
T  27224370 taaaaataattgctaattttgatttcggtgactaataatcattatacgagtgttattttc--tttaaatagaagattaatcttataaaaaa 27224282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 174; Significance: 2e-93; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 170 - 433
Target Start/End: Complemental strand, 17535864 - 17535599
Alignment:
Q  170 atgttccttattaaaaataattgttaattttgatttcgatggctaatagtcattatacggatgttaatttcaatttaaataaaagatttctcttttaaaa 269  Q
    |||||||||| ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  17535864 atgttccttagtaaaaataactgctaattttgatttcgatggctaatagtcattatacggatgttaatttcaatttaaataaaagatttctcttttaaat 17535765  T
Q  270 aattg---tgnnnnnnnnnatatggggtctatttttattatgagagtcgaacctccaatctcatagggacgaccctgaccgacactacaccaatacatgt 366  Q
      ||    |          |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||    
T  17535764 tttttattttttttattttatatggggtctatttttattatgagagtcgaacctccaatctcatagggacgaccctgaccgacacgacaccaacacatgt 17535665  T
Q  367 gattatattcaattatgtcagatttcaaattataactagtgtcgtcatgtcattgtgtctgatgtcc 433  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||    
T  17535664 gattatattcaattatgt-agatttcaaattataactagtgtcgtcatgtcattgtgtctggtgtcc 17535599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 181 - 276
Target Start/End: Original strand, 27246228 - 27246323
Alignment:
Q  181 taaaaataattgttaattttgatttcgatggctaatagtcattatacggatgttaatttcaatttaaataaaagatttctcttttaaaaaattgtg 276  Q
    ||||| |||||| |||||||||||||||||||||||| ||||||||||  ||||| |||||||||||||| || |||  |||||||||||||||||    
T  27246228 taaaagtaattgctaattttgatttcgatggctaataatcattatacgagtgttattttcaatttaaatagaaaattaatcttttaaaaaattgtg 27246323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 181 - 276
Target Start/End: Original strand, 11245395 - 11245491
Alignment:
Q  181 taaaaataattgttaattttgatttcgatggctaatagtcattatacggatgttaatttcaatttaaataaaagatttctctttt-aaaaaattgtg 276  Q
    ||||| |||||| |||||||||||||  ||||||||| ||||||||||  ||||| |||||||||||||| ||||||  |||||| |||||||||||    
T  11245395 taaaagtaattgctaattttgatttcagtggctaataatcattatacgagtgttattttcaatttaaatagaagattaatcttttgaaaaaattgtg 11245491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 10 - 82
Target Start/End: Complemental strand, 17535985 - 17535916
Alignment:
Q  10 gacatcagacccgttctttggggagtgtaaactgttcaactgagttggacctccaaaagtgatgagcgtcaag 82  Q
    |||| ||||||||||||||||    ||||||||||||||||||||||| |||||||||||||||||| |||||    
T  17535985 gacaccagacccgttctttgga---tgtaaactgttcaactgagttgggcctccaaaagtgatgagcatcaag 17535916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 181 - 271
Target Start/End: Original strand, 22868047 - 22868137
Alignment:
Q  181 taaaaataattgttaattttgatttcgatggctaatagtcattatacggatgttaatttcaatttaaataaaagatttctcttttaaaaaa 271  Q
    |||||||||||| ||||| |||||||  ||||||||| ||||||||||  ||||  |||||||||||||  ||||||  ||||||||||||    
T  22868047 taaaaataattgctaattatgatttcagtggctaataatcattatacgagtgtttttttcaatttaaatggaagattaatcttttaaaaaa 22868137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 346 - 410
Target Start/End: Complemental strand, 28322305 - 28322240
Alignment:
Q  346 cgacactacaccaatacatgtgattatattcaattatgtcagatt-tcaaattataactagtgtcg 410  Q
    |||||||||||||| ||||||||||| |||||||||  |||  || ||||||||| ||||||||||    
T  28322305 cgacactacaccaacacatgtgattacattcaattaattcattttctcaaattatcactagtgtcg 28322240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 3e-27; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 181 - 271
Target Start/End: Complemental strand, 44004406 - 44004316
Alignment:
Q  181 taaaaataattgttaattttgatttcgatggctaatagtcattatacggatgttaatttcaatttaaataaaagatttctcttttaaaaaa 271  Q
    ||||||||||||||||||||||||| ||||||||||| ||||||||||  ||||| |||||||||||||| ||||||| ||||||||||||    
T  44004406 taaaaataattgttaattttgattttgatggctaataatcattatacgagtgttattttcaatttaaatagaagatttatcttttaaaaaa 44004316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 181 - 276
Target Start/End: Complemental strand, 13751530 - 13751434
Alignment:
Q  181 taaaaataattgttaattttgatttcgatggctaatagtcattatacggatgttaatttcaatttaaataaaagatttctctttt-aaaaaattgtg 276  Q
    |||||||||||| ||||||| |||||||||||||||| ||||||||||  ||||| |||||||||||||| ||||||  |||||| |||||||||||    
T  13751530 taaaaataattgctaattttaatttcgatggctaataatcattatacgagtgttattttcaatttaaatagaagattaatcttttcaaaaaattgtg 13751434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 181 - 271
Target Start/End: Original strand, 9946725 - 9946815
Alignment:
Q  181 taaaaataattgttaattttgatttcgatggctaatagtcattatacggatgttaatttcaatttaaataaaagatttctcttttaaaaaa 271  Q
    |||||||||||| |||||||||||| | ||| ||||| ||||||||||  ||||| |||||||||||||| ||||||  ||||||||||||    
T  9946725 taaaaataattggtaattttgattttggtggttaataatcattatacgagtgttattttcaatttaaatagaagattaatcttttaaaaaa 9946815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 171 - 271
Target Start/End: Complemental strand, 31661411 - 31661311
Alignment:
Q  171 tgttccttattaaaaataattgttaattttgatttcgatggctaatagtcattatacggatgttaatttcaatttaaataaaagatttctcttttaaaaa 270  Q
    |||||||||  ||||||||||| |||||||||||| ||||  ||||  |||||||||||| |||| |||||||| ||||| ||||||  |||||||||||    
T  31661411 tgttccttagaaaaaataattgctaattttgattttgatgaataatgatcattatacggaagttattttcaattcaaatagaagattgttcttttaaaaa 31661312  T
Q  271 a 271  Q
    |    
T  31661311 a 31661311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 181 - 271
Target Start/End: Original strand, 24534906 - 24534996
Alignment:
Q  181 taaaaataattgttaattttgatttcgatggctaatagtcattatacggatgttaatttcaatttaaataaaagatttctcttttaaaaaa 271  Q
    |||||||||||| |||||||||||| | ||||||||| ||||||||||  ||||| |||||||||||| | || |||  ||||||||||||    
T  24534906 taaaaataattgctaattttgattttggtggctaataatcattatacgagtgttattttcaatttaaacagaaaattaatcttttaaaaaa 24534996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 181 - 249
Target Start/End: Complemental strand, 6976652 - 6976584
Alignment:
Q  181 taaaaataattgttaattttgatttcgatggctaatagtcattatacggatgttaatttcaatttaaat 249  Q
    |||||||||||| ||||||| |||| | ||||||||| |||||||||| |||||| |||||||||||||    
T  6976652 taaaaataattgctaattttaattttggtggctaataatcattatacgaatgttattttcaatttaaat 6976584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 181 - 271
Target Start/End: Complemental strand, 21466975 - 21466885
Alignment:
Q  181 taaaaataattgttaattttgatttcgatggctaatagtcattatacggatgttaatttcaatttaaataaaagatttctcttttaaaaaa 271  Q
    ||||| |||||| ||||||||||||  |||||||||| |||||||| |  ||||| ||||||| |||| | ||||||  ||||||||||||    
T  21466975 taaaactaattgctaattttgattttcatggctaataatcattataagagtgttattttcaatataaacagaagattaatcttttaaaaaa 21466885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 181 - 271
Target Start/End: Original strand, 33474617 - 33474707
Alignment:
Q  181 taaaaataattgttaattttgatttcgatggctaatagtcattatacggatgttaatttcaatttaaataaaagatttctcttttaaaaaa 271  Q
    |||||||||||| |||||||||||||  | ||| ||| |||||||| | |||||| ||| |||||||||  ||||||  ||||||||||||    
T  33474617 taaaaataattgctaattttgatttcagtagctgataatcattatatgaatgttatttttaatttaaattgaagattaatcttttaaaaaa 33474707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 187 - 257
Target Start/End: Original strand, 1738683 - 1738753
Alignment:
Q  187 taattgttaattttgatttcgatggctaatagtcattatacggatgttaatttcaatttaaataaaagatt 257  Q
    |||||| ||||||| |||||| ||||| ||| |||||||||   ||||| || ||||||||||||||||||    
T  1738683 taattggtaattttaatttcggtggctcataatcattatacaagtgttatttccaatttaaataaaagatt 1738753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 289 - 325
Target Start/End: Complemental strand, 42156486 - 42156450
Alignment:
Q  289 tggggtctatttttattatgagagtcgaacctccaat 325  Q
    |||||||||||||||||||||||||||| | ||||||    
T  42156486 tggggtctatttttattatgagagtcgagcatccaat 42156450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 5e-23; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 170 - 273
Target Start/End: Complemental strand, 29864769 - 29864666
Alignment:
Q  170 atgttccttattaaaaataattgttaattttgatttcgatggctaatagtcattatacggatgttaatttcaatttaaataaaagatttctcttttaaaa 269  Q
    |||||||||| |||||||||||| ||||||| |||| | ||||||||| ||||||||| ||||||| |||||||||||||| ||||||  |||||| |||    
T  29864769 atgttccttactaaaaataattgctaattttaattttggtggctaataatcattatactgatgttattttcaatttaaatagaagattgttctttttaaa 29864670  T
Q  270 aatt 273  Q
    ||||    
T  29864669 aatt 29864666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 181 - 271
Target Start/End: Complemental strand, 26687781 - 26687691
Alignment:
Q  181 taaaaataattgttaattttgatttcgatggctaatagtcattatacggatgttaatttcaatttaaataaaagatttctcttttaaaaaa 271  Q
    |||||||||||||||||||| |||||| ||| ||||| ||||||||||  ||||| |||||||||||||| ||||||  ||||||||||||    
T  26687781 taaaaataattgttaattttaatttcggtggttaataatcattatacgagtgttattttcaatttaaatagaagattaatcttttaaaaaa 26687691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 182 - 271
Target Start/End: Original strand, 9672504 - 9672593
Alignment:
Q  182 aaaaataattgttaattttgatttcgatggctaatagtcattatacggatgttaatttcaatttaaataaaagatttctcttttaaaaaa 271  Q
    ||||||||||| |||||||||||||||||||||||| ||||||||||  ||||| ||| |||||||||| ||||||  ||||| ||||||    
T  9672504 aaaaataattgctaattttgatttcgatggctaataatcattatacgagtgttattttaaatttaaatagaagattaatctttaaaaaaa 9672593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 181 - 271
Target Start/End: Complemental strand, 24892098 - 24892008
Alignment:
Q  181 taaaaataattgttaattttgatttcgatggctaatagtcattatacggatgttaatttcaatttaaataaaagatttctcttttaaaaaa 271  Q
    ||||||||||||||||||||| ||| | |||||||||  |||||||||  ||||| |||||||||||||| ||||||  ||||||||||||    
T  24892098 taaaaataattgttaattttggttttggtggctaataaccattatacgagtgttattttcaatttaaatagaagattaatcttttaaaaaa 24892008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 181 - 271
Target Start/End: Original strand, 50509797 - 50509887
Alignment:
Q  181 taaaaataattgttaattttgatttcgatggctaatagtcattatacggatgttaatttcaatttaaataaaagatttctcttttaaaaaa 271  Q
    |||||||||||| |||||||||||| | ||||||||| ||||||||||  ||||| |||||||||||||| || |||  ||||||||||||    
T  50509797 taaaaataattgctaattttgattttggtggctaataatcattatacgagtgttattttcaatttaaatagaaaattaatcttttaaaaaa 50509887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 181 - 271
Target Start/End: Complemental strand, 23688470 - 23688380
Alignment:
Q  181 taaaaataattgttaattttgatttcgatggctaatagtcattatacggatgttaatttcaatttaaataaaagatttctcttttaaaaaa 271  Q
    |||||||||||||||||||||||||   || | |||| | ||||||||  ||||| |||||||||||||| ||||||  ||||||||||||    
T  23688470 taaaaataattgttaattttgattttagtgacaaataattattatacgagtgttattttcaatttaaatagaagattattcttttaaaaaa 23688380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 181 - 271
Target Start/End: Complemental strand, 5882616 - 5882526
Alignment:
Q  181 taaaaataattgttaattttgatttcgatggctaatagtcattatacggatgttaatttcaatttaaataaaagatttctcttttaaaaaa 271  Q
    ||||||||||| ||||||||||||||| ||| ||||| | ||||||||   |||| ||||||||| |||| ||||||  ||||| ||||||    
T  5882616 taaaaataattattaattttgatttcggtggttaataattattatacgagcgttattttcaattttaatagaagattaatctttaaaaaaa 5882526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 181 - 271
Target Start/End: Complemental strand, 7380462 - 7380372
Alignment:
Q  181 taaaaataattgttaattttgatttcgatggctaatagtcattatacggatgttaatttcaatttaaataaaagatttctcttttaaaaaa 271  Q
    |||||||||||| ||||||| |||||| || ||||||  ||| ||| |  ||||| |||||||||||||| ||||||  ||||||||||||    
T  7380462 taaaaataattgctaattttaatttcggtgactaataaccataatatgagtgttattttcaatttaaatagaagattaatcttttaaaaaa 7380372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 174 - 257
Target Start/End: Original strand, 27565026 - 27565107
Alignment:
Q  174 tccttattaaaaataattgttaattttgatttcgatggctaatagtcattatacggatgttaatttcaatttaaataaaagatt 257  Q
    |||||| |||||| ||||||||||||| ||||   ||| ||||| |||||||||  |||||| |||||||||||||||||||||    
T  27565026 tccttagtaaaaa-aattgttaattttaattttagtggttaataatcattatacc-atgttattttcaatttaaataaaagatt 27565107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 227 - 271
Target Start/End: Original strand, 17387795 - 17387839
Alignment:
Q  227 cggatgttaatttcaatttaaataaaagatttctcttttaaaaaa 271  Q
    ||||||||| |||||||||||||  |||||| |||||||||||||    
T  17387795 cggatgttattttcaatttaaattgaagattgctcttttaaaaaa 17387839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 181 - 276
Target Start/End: Original strand, 7201116 - 7201211
Alignment:
Q  181 taaaaataattgttaattttgatttcgatggctaatagtcattatacggatgttaatttcaatttaaataaaagatttctcttttaaaaaattgtg 276  Q
    |||||||||||| |||||||||||||  ||||||||| |||||||||   ||||| |||||||||||||| ||||||  |||||||||||||||||    
T  7201116 taaaaataattgctaattttgatttcagtggctaataatcattatacaagtgttattttcaatttaaatagaagattaatcttttaaaaaattgtg 7201211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 175 - 270
Target Start/End: Original strand, 17364243 - 17364337
Alignment:
Q  175 ccttattaaaaataattgttaattttgatttcgatggctaatagtcattatacggatgttaatttcaatttaaataaaagatttctcttttaaaaa 270  Q
    ||||| |||||||||||| ||||||||||| || ||||||||| ||||||||||| ||||  |||||||||||||| |||||| ||||||||||||    
T  17364243 ccttaataaaaataattgctaattttgatt-cggtggctaataatcattatacggctgttcttttcaatttaaatagaagattgctcttttaaaaa 17364337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 181 - 271
Target Start/End: Complemental strand, 1112583 - 1112493
Alignment:
Q  181 taaaaataattgttaattttgatttcgatggctaatagtcattatacggatgttaatttcaatttaaataaaagatttctcttttaaaaaa 271  Q
    |||||||||||| ||||||| |||||| |||||||||  ||||||||| |||||| |||||||||||||| ||||||  ||||||||||||    
T  1112583 taaaaataattgctaattttaatttcggtggctaataaccattatacgaatgttattttcaatttaaatagaagattaatcttttaaaaaa 1112493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 181 - 271
Target Start/End: Complemental strand, 26497942 - 26497851
Alignment:
Q  181 taaaaataattgttaattttgatttcgatggctaatagtcattatacggatgtta-atttcaatttaaataaaagatttctcttttaaaaaa 271  Q
    |||||||||||| |||||||||||||| ||||||||| ||||||||||  |||||  |||||||||||||| ||||||  ||||||||||||    
T  26497942 taaaaataattgctaattttgatttcggtggctaataatcattatacgtgtgttatttttcaatttaaatagaagattaatcttttaaaaaa 26497851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 171 - 269
Target Start/End: Complemental strand, 29288516 - 29288418
Alignment:
Q  171 tgttccttattaaaaataattgttaattttgatttcgatggctaatagtcattatacggatgttaatttcaatttaaataaaagatttctcttttaaaa 269  Q
    ||||||||| ||||||||| | |||||||| |||||| | ||||||| | ||||||||||||||  |||||||||||||| ||||||  ||||||||||    
T  29288516 tgttccttagtaaaaataaatattaattttaatttcggttgctaataattattatacggatgttcttttcaatttaaatagaagattgatcttttaaaa 29288418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 181 - 273
Target Start/End: Complemental strand, 28847855 - 28847763
Alignment:
Q  181 taaaaataattgttaattttgatttcgatggctaatagtcattatacggatgttaatttcaatttaaataaaagatttctcttttaaaaaatt 273  Q
    ||||||||||||||||||||||||||  ||||||||| |||||||||   ||||| ||| |||||||||| | ||||  ||||||||||||||    
T  28847855 taaaaataattgttaattttgatttcagtggctaataatcattatacatgtgttatttttaatttaaatagaggattaatcttttaaaaaatt 28847763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 181 - 342
Target Start/End: Original strand, 10669975 - 10670138
Alignment:
Q  181 taaaaataattgttaattttgatttcgatggctaatagtcattatacggatgttaatttcaatttaaataaaagat--ttctcttttaaaaaattgtgnn 278  Q
    ||||| |||||  |||||||||||||  || |||||| ||||||||||||||||| ||| |||||||||| |||||  |||| |||| ||||||||||      
T  10669975 taaaactaattactaattttgatttcagtgactaataatcattatacggatgttatttttaatttaaatagaagattattctttttttaaaaattgtgtt 10670074  T
Q  279 nnnnnnnatatggggtctatttttattatgagagtcgaacctccaatctcatagggacgaccct 342  Q
           ||   ||| ||||||||| |||||||||||| |||||| | ||||||||||| ||||    
T  10670075 tttttttattaagggcctatttttactatgagagtcgagcctccagtttcatagggacggccct 10670138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 181 - 271
Target Start/End: Complemental strand, 609706 - 609616
Alignment:
Q  181 taaaaataattgttaattttgatttcgatggctaatagtcattatacggatgttaatttcaatttaaataaaagatttctcttttaaaaaa 271  Q
    ||||| |||||| ||||||||| ||  |||||||||| ||||||||||  ||||| ||||||| |||||| ||||||   |||||||||||    
T  609706 taaaactaattgctaattttgactttcatggctaataatcattatacgagtgttattttcaatataaatagaagattaaccttttaaaaaa 609616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 271
Target Start/End: Original strand, 1522613 - 1522705
Alignment:
Q  181 taaaaataattgttaattttgatttcgatggctaatagtcat--tatacggatgttaatttcaatttaaataaaagatttctcttttaaaaaa 271  Q
    |||||||||| | ||||||| |||||| |||||||||  |||  ||||||  ||||| |||||||||||||| ||||||  ||| ||||||||    
T  1522613 taaaaataatagctaattttaatttcggtggctaataaccatattatacgagtgttattttcaatttaaatagaagattaatctcttaaaaaa 1522705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 295 - 344
Target Start/End: Complemental strand, 1722176 - 1722127
Alignment:
Q  295 ctatttttattatgagagtcgaacctccaatctcatagggacgaccctga 344  Q
    |||||||||||||||||||| |  ||| ||| ||||||||||||||||||    
T  1722176 ctatttttattatgagagtcaagtctctaatttcatagggacgaccctga 1722127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 5e-20; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 181 - 271
Target Start/End: Original strand, 26290429 - 26290519
Alignment:
Q  181 taaaaataattgttaattttgatttcgatggctaatagtcattatacggatgttaatttcaatttaaataaaagatttctcttttaaaaaa 271  Q
    |||||||||||| ||||||| ||||||||||||||||  |||||||||  ||||| |||||||||||||| ||||||  ||||||||||||    
T  26290429 taaaaataattgctaattttaatttcgatggctaataaccattatacgagtgttattttcaatttaaatagaagattaatcttttaaaaaa 26290519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 182 - 271
Target Start/End: Original strand, 30707048 - 30707137
Alignment:
Q  182 aaaaataattgttaattttgatttcgatggctaatagtcattatacggatgttaatttcaatttaaataaaagatttctcttttaaaaaa 271  Q
    ||||||||||| |||||||||||| | ||||||||| ||||||||||  ||||| |||||||||||||| || |||  ||||||||||||    
T  30707048 aaaaataattgctaattttgattttggtggctaataatcattatacgagtgttattttcaatttaaatagaaaattaatcttttaaaaaa 30707137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 181 - 271
Target Start/End: Original strand, 2104095 - 2104185
Alignment:
Q  181 taaaaataattgttaattttgatttcgatggctaatagtcattatacggatgttaatttcaatttaaataaaagatttctcttttaaaaaa 271  Q
    |||||||||||| |||||||||||| | ||||||||| |||||| ||   ||||| |||||||||||||| ||||||  ||||||||||||    
T  2104095 taaaaataattgctaattttgattttggtggctaataatcattagactagtgttattttcaatttaaatagaagattaatcttttaaaaaa 2104185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 181 - 271
Target Start/End: Complemental strand, 5869069 - 5868979
Alignment:
Q  181 taaaaataattgttaattttgatttcgatggctaatagtcattatacggatgttaatttcaatttaaataaaagatttctcttttaaaaaa 271  Q
    |||||||||||  ||||||| |||| | |||||||||  |||||||||  ||||| |||||||||||||| ||||||  ||||||||||||    
T  5869069 taaaaataatttctaattttaattttggtggctaataaccattatacgagtgttattttcaatttaaatagaagattaatcttttaaaaaa 5868979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 14 - 82
Target Start/End: Original strand, 30706859 - 30706927
Alignment:
Q  14 tcagacccgttctttggggagtgtaaactgttcaactgagttggacctccaaaagtgatgagcgtcaag 82  Q
    ||||| ||||||||||||||||| |||  |||||||||||||||| |||| ||||||||| || |||||    
T  30706859 tcagagccgttctttggggagtgcaaagagttcaactgagttggatctcccaaagtgatgggcctcaag 30706927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 181 - 276
Target Start/End: Complemental strand, 44259912 - 44259816
Alignment:
Q  181 taaaaataattgttaattttgatttcgatggctaatagtcattatacggatgttaatttcaatttaaataaaagatttctc-ttttaaaaaattgtg 276  Q
    |||||||||||| |||||||||||||  ||||||||| | ||||||||  ||| | ||||||||||| || ||||||  || |||||||||||||||    
T  44259912 taaaaataattgctaattttgatttcagtggctaataataattatacgagtgtaattttcaatttaactagaagattaatctttttaaaaaattgtg 44259816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 181 - 271
Target Start/End: Complemental strand, 18242234 - 18242144
Alignment:
Q  181 taaaaataattgttaattttgatttcgatggctaatagtcattatacggatgttaatttcaatttaaataaaagatttctcttttaaaaaa 271  Q
    |||||||||||| ||||||| |||| | ||| |||||  |||||||||  ||||| |||| ||||||||| ||||||  ||||||||||||    
T  18242234 taaaaataattgctaattttaattttggtggttaataaccattatacgagtgttattttcgatttaaatagaagattaatcttttaaaaaa 18242144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0125 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: scaffold0125
Description:

Target: scaffold0125; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 183 - 271
Target Start/End: Complemental strand, 5859 - 5771
Alignment:
Q  183 aaaataattgttaattttgatttcgatggctaatagtcattatacggatgttaatttcaatttaaataaaagatttctcttttaaaaaa 271  Q
    |||||||||| |||||||||||||| ||||||||| |||||||| |||||||  ||| |||||||||  |||||| |||||||||||||    
T  5859 aaaataattgctaattttgatttcggtggctaataatcattatatggatgttgtttttaatttaaattgaagattgctcttttaaaaaa 5771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 7e-19; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 182 - 270
Target Start/End: Original strand, 6166387 - 6166475
Alignment:
Q  182 aaaaataattgttaattttgatttcgatggctaatagtcattatacggatgttaatttcaatttaaataaaagatttctcttttaaaaa 270  Q
    |||||||||| ||||||||||||||| ||||||||| ||||||||||  ||||| ||| |||||||||| ||||||  |||||||||||    
T  6166387 aaaaataatttttaattttgatttcggtggctaataatcattatacgagtgttattttaaatttaaatagaagattaatcttttaaaaa 6166475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 181 - 276
Target Start/End: Complemental strand, 6087136 - 6087041
Alignment:
Q  181 taaaaataattgttaattttgatttcgatggctaatagtcattatacggatgttaatttcaatttaaataaaagatttctcttttaaaaaattgtg 276  Q
    |||||||||||| ||||||| |||||| |||||||||  |||||||||  ||||| |||||||||||||| ||||||  | |||||||||||||||    
T  6087136 taaaaataattgctaattttaatttcggtggctaataaccattatacgagtgttattttcaatttaaatataagattaatattttaaaaaattgtg 6087041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 182 - 271
Target Start/End: Complemental strand, 16061539 - 16061450
Alignment:
Q  182 aaaaataattgttaattttgatttcgatggctaatagtcattatacggatgttaatttcaatttaaataaaagatttctcttttaaaaaa 271  Q
    ||||||||||| |||||||||||||| |||||||||  ||||||||   ||||| |||||||||||||| ||||||  ||||||||||||    
T  16061539 aaaaataattgctaattttgatttcggtggctaataaccattatacaagtgttattttcaatttaaatagaagattgatcttttaaaaaa 16061450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 181 - 271
Target Start/End: Original strand, 6131962 - 6132052
Alignment:
Q  181 taaaaataattgttaattttgatttcgatggctaatagtcattatacggatgttaatttcaatttaaataaaagatttctcttttaaaaaa 271  Q
    |||||||||||  ||||||| |||||| ||||||||| ||||||||||  ||||| |||||||||||||| ||||||  |||||| |||||    
T  6131962 taaaaataattactaattttaatttcggtggctaataatcattatacgagtgttattttcaatttaaatagaagattaatctttttaaaaa 6132052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 181 - 271
Target Start/End: Complemental strand, 32728062 - 32727972
Alignment:
Q  181 taaaaataattgttaattttgatttcgatggctaatagtcattatacggatgttaatttcaatttaaataaaagatttctcttttaaaaaa 271  Q
    |||||||||||||||||||| |||| | |||||||||  ||||||| |  ||||| |||||||||||||| ||||||  ||||||||||||    
T  32728062 taaaaataattgttaattttaattttggtggctaataaccattataggagtgttattttcaatttaaatagaagattaatcttttaaaaaa 32727972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 181 - 271
Target Start/End: Original strand, 38138770 - 38138860
Alignment:
Q  181 taaaaataattgttaattttgatttcgatggctaatagtcattatacggatgttaatttcaatttaaataaaagatttctcttttaaaaaa 271  Q
    |||||||||||||| |||||||||| |  || ||||| ||||||||||  ||||| ||||||||||||||||| |||  ||||||||||||    
T  38138770 taaaaataattgttgattttgattttgggggttaataatcattatacgagtgttattttcaatttaaataaaatattaatcttttaaaaaa 38138860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 187 - 271
Target Start/End: Original strand, 18886184 - 18886268
Alignment:
Q  187 taattgttaattttgatttcgatggctaatagtcattatacggatgttaatttcaatttaaataaaagatttctcttttaaaaaa 271  Q
    |||||| ||||||| |||||| ||| ||||| ||||||||||  ||||| |||||||||||||| ||||||  ||||||||||||    
T  18886184 taattgctaattttaatttcggtggataataatcattatacgagtgttattttcaatttaaatagaagattaatcttttaaaaaa 18886268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 181 - 258
Target Start/End: Complemental strand, 36441174 - 36441098
Alignment:
Q  181 taaaaataattgttaattttgatttcgatggctaatagtcattatacggatgttaatttcaatttaaataaaagattt 258  Q
    |||||||||||| |||||||||||||  ||||||||| | ||||||||  ||||| ||||| |||||||| |||||||    
T  36441174 taaaaataattgctaattttgatttcagtggctaata-taattatacgagtgttattttcagtttaaatagaagattt 36441098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 7e-19; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 181 - 273
Target Start/End: Original strand, 42624767 - 42624859
Alignment:
Q  181 taaaaataattgttaattttgatttcgatggctaatagtcattatacggatgttaatttcaatttaaataaaagatttctcttttaaaaaatt 273  Q
    |||||||||||| ||||||| |||||| |||||||||  |||||||||  ||||||| |||||||||||| ||||||  ||||||||||||||    
T  42624767 taaaaataattgctaattttaatttcggtggctaataaccattatacgagtgttaatatcaatttaaatagaagattaatcttttaaaaaatt 42624859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 181 - 276
Target Start/End: Original strand, 54561112 - 54561207
Alignment:
Q  181 taaaaataattgttaattttgatttcgatggctaatagtcattatacggatgttaatttcaatttaaataaaagatttctcttttaaaaaattgtg 276  Q
    ||||| |||||| |||||||||||| | | ||||||| |||||||| |  ||||| |||||||||||||| ||||||  ||||| |||||||||||    
T  54561112 taaaactaattgctaattttgattttggtagctaataatcattatatgagtgttattttcaatttaaatagaagattaatctttaaaaaaattgtg 54561207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 209 - 271
Target Start/End: Complemental strand, 7741935 - 7741874
Alignment:
Q  209 tggctaatagtcattatacggatgttaatttcaatttaaataaaagatttctcttttaaaaaa 271  Q
    ||||||||| | |||||||| |||||| |||||||||||||| ||||||||||||||||||||    
T  7741935 tggctaataattattatacg-atgttattttcaatttaaatataagatttctcttttaaaaaa 7741874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 295 - 343
Target Start/End: Complemental strand, 35202679 - 35202631
Alignment:
Q  295 ctatttttattatgagagtcgaacctccaatctcatagggacgaccctg 343  Q
    |||||||||||||||||  ||||| |||||| |||||||||||||||||    
T  35202679 ctatttttattatgagaaccgaacatccaatttcatagggacgaccctg 35202631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 299 - 343
Target Start/End: Complemental strand, 4207312 - 4207268
Alignment:
Q  299 ttttattatgagagtcgaacctccaatctcatagggacgaccctg 343  Q
    |||||||||||||||||| |||||||| | |||||||| ||||||    
T  4207312 ttttattatgagagtcgagcctccaattttatagggacaaccctg 4207268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University