View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6697_high_11 (Length: 240)
Name: NF6697_high_11
Description: NF6697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6697_high_11 |
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Alignment Details
Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 43144910 - 43145130
Alignment:
| Q |
1 |
ttatattccgcattgttagaagttgcatctccaccactgacatttatgcgtctaagatgaatagatatgatttgtgaaaataaacattttcatttatcag |
100 |
Q |
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| T |
43144910 |
ttatattccgcattgttacaagttgcatctccaccactgacatttatgcgtctaagatgaatagatatgatttgtgaaaataaacattttcatttatcag |
43145009 |
T |
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| Q |
101 |
ttctttcatcttgaagtgtgggtgggttatcacaagtgaccttcctagccatatgtacttttgtggtacttctttcaatgtggaacttgacaaggataga |
200 |
Q |
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| T |
43145010 |
ttctttcatcttgaagt----gtgggttatcacaagtgaccttcctagccatatgtacttttgtggtacttctttcaatgtggaacttgacaaggataga |
43145105 |
T |
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| Q |
201 |
agaagttcaactatgcaacatgttg |
225 |
Q |
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| T |
43145106 |
agaagttcaactatgcaacatgttg |
43145130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 124 - 222
Target Start/End: Original strand, 43157537 - 43157632
Alignment:
| Q |
124 |
gggttatcacaagtgaccttcctagccatatgtacttttgtggtacttctttcaatgtggaacttgacaaggatagaagaagttcaactatgcaacatg |
222 |
Q |
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| T |
43157537 |
gggttatcactggtgaccttcctagccatatgcactcttgtggaacttctttcaatgtggaacttgacaaggat---agaagttcaactgtgcaacatg |
43157632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 81
Target Start/End: Original strand, 43157373 - 43157441
Alignment:
| Q |
13 |
ttgttagaagttgcatctccaccactgacatttatgcgtctaagatgaatagatatgatttgtgaaaat |
81 |
Q |
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| T |
43157373 |
ttgttacaagttgcatctccactactgatatttatgcatctacgatgaatagatagggtttgtgaaaat |
43157441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 225
Target Start/End: Complemental strand, 33832559 - 33832482
Alignment:
| Q |
145 |
ctagccatatgtacttttgtggtacttctttcaatgtggaacttgacaaggatagaagaagttcaactatgcaacatgttg |
225 |
Q |
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| T |
33832559 |
ctagccatatgcactcttcttgagcttctttcaatgtggaacttgacaagaat---agaagttcagctttgcaacatgttg |
33832482 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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