View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6697_high_2 (Length: 374)
Name: NF6697_high_2
Description: NF6697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6697_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 60 - 358
Target Start/End: Original strand, 51232671 - 51232982
Alignment:
| Q |
60 |
catatattcataaatttcatatgactttgcaattaatatttgagggcccaataattgaaatttatcatcctcattttcattgagaaacaattttggaccc |
159 |
Q |
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| T |
51232671 |
catatattcctaaatttcatatgactttgcaattaatatttgagggcccaataattgaaatttatcatcctcatttgcattgagaaacaattttggaccc |
51232770 |
T |
|
| Q |
160 |
acaaccactttagttcattatacatggcattcatcatcgtctat-------------atcattacaactgctaattgttgtcttacattacaagacgtac |
246 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51232771 |
acaaccactttagttcattatacatggcattcatcatcgtctatgtatatgcactaaatcattacaactgctaattgttgtcttacattacaagacgtac |
51232870 |
T |
|
| Q |
247 |
agacaataaaacgaaagcaaaattaaataaaataatatatattttgaagaagtaagaatacaaagaagcagaaaatagaagttggatattttattggttg |
346 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51232871 |
agacaataaaacgaaagcaaaattaaataaaataatatatattttgaagaagaaagaatacaaagaagcagaaaatagaagttggatattttattggttg |
51232970 |
T |
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| Q |
347 |
tatagtatgaag |
358 |
Q |
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|||||||||||| |
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| T |
51232971 |
tatagtatgaag |
51232982 |
T |
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