View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6697_high_3 (Length: 367)

Name: NF6697_high_3
Description: NF6697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6697_high_3
NF6697_high_3
[»] chr4 (9 HSPs)
chr4 (228-347)||(22370227-22370344)
chr4 (9-79)||(19429076-19429147)
chr4 (15-80)||(42468438-42468504)
chr4 (15-79)||(13774271-13774336)
chr4 (15-79)||(42470768-42470833)
chr4 (15-79)||(45162299-45162364)
chr4 (80-130)||(22370116-22370169)
chr4 (31-79)||(50855771-50855820)
chr4 (15-76)||(13776567-13776630)
[»] chr5 (8 HSPs)
chr5 (9-80)||(22601016-22601088)
chr5 (9-79)||(37215567-37215638)
chr5 (15-80)||(11849916-11849982)
chr5 (15-79)||(11852175-11852240)
chr5 (9-79)||(21743727-21743797)
chr5 (9-79)||(37207999-37208070)
chr5 (15-79)||(23164254-23164319)
chr5 (19-79)||(15469197-15469258)
[»] chr1 (9 HSPs)
chr1 (9-79)||(2403835-2403906)
chr1 (15-79)||(29833981-29834046)
chr1 (9-79)||(2409957-2410028)
chr1 (15-80)||(10911470-10911536)
chr1 (15-79)||(13011816-13011881)
chr1 (15-79)||(29833076-29833141)
chr1 (15-79)||(10909226-10909292)
chr1 (15-79)||(8933549-8933614)
chr1 (40-79)||(734579-734619)
[»] chr7 (14 HSPs)
chr7 (15-80)||(3935073-3935139)
chr7 (15-79)||(3932834-3932899)
chr7 (15-81)||(8731174-8731241)
chr7 (9-79)||(8733495-8733566)
chr7 (15-81)||(36464211-36464278)
chr7 (15-80)||(8414489-8414555)
chr7 (15-79)||(16496953-16497018)
chr7 (15-79)||(18395432-18395497)
chr7 (15-79)||(42678571-42678636)
chr7 (9-79)||(19789201-19789272)
chr7 (15-79)||(16535135-16535200)
chr7 (15-79)||(16630462-16630527)
chr7 (9-77)||(19786895-19786964)
chr7 (9-77)||(19093846-19093912)
[»] chr3 (2 HSPs)
chr3 (15-80)||(4533252-4533318)
chr3 (15-79)||(4530955-4531020)
[»] chr2 (10 HSPs)
chr2 (15-79)||(5164151-5164216)
chr2 (15-79)||(42275556-42275621)
chr2 (15-79)||(42277782-42277847)
chr2 (15-73)||(8995076-8995135)
chr2 (18-79)||(39816089-39816151)
chr2 (15-73)||(15730034-15730093)
chr2 (9-79)||(31486998-31487069)
chr2 (9-81)||(31489282-31489355)
chr2 (19-80)||(23860126-23860188)
chr2 (19-71)||(34576612-34576665)
[»] scaffold0098 (1 HSPs)
scaffold0098 (9-79)||(3707-3777)
[»] chr8 (5 HSPs)
chr8 (15-81)||(24519151-24519218)
chr8 (15-79)||(4877111-4877176)
chr8 (15-79)||(4879439-4879504)
chr8 (9-79)||(36379465-36379536)
chr8 (9-79)||(21268120-21268191)
[»] scaffold0599 (1 HSPs)
scaffold0599 (15-79)||(1736-1801)
[»] scaffold0050 (2 HSPs)
scaffold0050 (19-79)||(29453-29514)
scaffold0050 (19-79)||(31768-31829)
[»] scaffold0008 (1 HSPs)
scaffold0008 (15-79)||(88466-88531)
[»] chr6 (1 HSPs)
chr6 (19-77)||(20642300-20642359)
[»] scaffold1361 (1 HSPs)
scaffold1361 (15-79)||(74-140)


Alignment Details
Target: chr4 (Bit Score: 109; Significance: 9e-55; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 228 - 347
Target Start/End: Original strand, 22370227 - 22370344
Alignment:
Q  228 tccataagaaacgggcacgtataatgttatgtgctgattttcacatctcagggaccagggagagctatcagcagcaaccatcaataccatactcatgtta 327  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22370227 tccataagaaacgggcacgtataatgttatgtgctgattttcacatctcagggaccagggagagctatcagcagcaaccatcaataccatactcatgtta 22370326  T
Q  328 caatatatttttatggaaaa 347  Q
    ||  ||||||||||||||||    
T  22370327 ca--atatttttatggaaaa 22370344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 9 - 79
Target Start/End: Complemental strand, 19429147 - 19429076
Alignment:
Q  9 aatataaacttttctttaagattattagagagtttctcta-tttctctaccattccttttgtccctgagcca 79  Q
    |||||| |||||||||| ||| |||||||||||||||||| |||||||||| |||||||||||| |||||||    
T  19429147 aatatatacttttctttgagaatattagagagtttctctattttctctacctttccttttgtccgtgagcca 19429076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 80
Target Start/End: Complemental strand, 42468504 - 42468438
Alignment:
Q  15 aacttttctttaagattattagagagtttctctattt-ctctaccattccttttgtccctgagccaa 80  Q
    ||||||||||| ||| |||||||| |||||||||||| ||||||| |||||||||||||||||||||    
T  42468504 aacttttctttgagaatattagagtgtttctctattttctctacctttccttttgtccctgagccaa 42468438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 15 - 79
Target Start/End: Original strand, 13774271 - 13774336
Alignment:
Q  15 aacttttctttaagattattagagagtttctctattt-ctctaccattccttttgtccctgagcca 79  Q
    ||||||||||| ||| |||||||| |||||||||||| ||||||| ||||||||||||||||||||    
T  13774271 aacttttctttgagaatattagagtgtttctctattttctctacctttccttttgtccctgagcca 13774336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 15 - 79
Target Start/End: Complemental strand, 42470833 - 42470768
Alignment:
Q  15 aacttttctttaagattattagagagtttctctattt-ctctaccattccttttgtccctgagcca 79  Q
    ||||||||||| ||| |||||||| |||||||||||| ||||||| ||||||||||||||||||||    
T  42470833 aacttttctttgagaatattagagtgtttctctattttctctacctttccttttgtccctgagcca 42470768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 15 - 79
Target Start/End: Original strand, 45162299 - 45162364
Alignment:
Q  15 aacttttctttaagattattagagagtttctctattt-ctctaccattccttttgtccctgagcca 79  Q
    ||||||||||| ||| |||||||| |||||||||||| ||||||| ||||||||||||||||||||    
T  45162299 aacttttctttgagaatattagagtgtttctctattttctctacctttccttttgtccctgagcca 45162364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 80 - 130
Target Start/End: Original strand, 22370116 - 22370169
Alignment:
Q  80 aagaatttgatgtacgaatgtaaaatcgaaat---ataataaagtgaggttaca 130  Q
    ||||||||| ||||||||||||||||||||||   |||||||||||||||||||    
T  22370116 aagaatttgttgtacgaatgtaaaatcgaaatataataataaagtgaggttaca 22370169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 31 - 79
Target Start/End: Complemental strand, 50855820 - 50855771
Alignment:
Q  31 tattagagagtttctctattt-ctctaccattccttttgtccctgagcca 79  Q
    |||||||| |||||||||||| ||||||| ||||||||||||||||||||    
T  50855820 tattagagtgtttctctattttctctacctttccttttgtccctgagcca 50855771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 15 - 76
Target Start/End: Original strand, 13776567 - 13776630
Alignment:
Q  15 aacttttc-tttaagattattagagagtttctctattt-ctctaccattccttttgtccctgag 76  Q
    |||||||| ||| ||| |||||||| |||||||||||| ||||||| |||||||||||||||||    
T  13776567 aacttttcgtttgagaatattagagtgtttctctattttctctacctttccttttgtccctgag 13776630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 9 - 80
Target Start/End: Original strand, 22601016 - 22601088
Alignment:
Q  9 aatataaacttttctttaagattattagagagtttctcta-tttctctaccattccttttgtccctgagccaa 80  Q
    ||||||| ||||||||| ||| |||||||||||||||||| |||||||||| | |||||||||||||||||||    
T  22601016 aatataatcttttctttgagaatattagagagtttctctattttctctaccttcccttttgtccctgagccaa 22601088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 9 - 79
Target Start/End: Original strand, 37215567 - 37215638
Alignment:
Q  9 aatataaacttttctttaagattattagagagtttctcta-tttctctaccattccttttgtccctgagcca 79  Q
    ||||||| ||||||||| ||| |||||||||||||||||| |||||||||| | ||||||||||||||||||    
T  37215567 aatataatcttttctttgagaatattagagagtttctctattttctctaccttcccttttgtccctgagcca 37215638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 80
Target Start/End: Complemental strand, 11849982 - 11849916
Alignment:
Q  15 aacttttctttaagattattagagagtttctctattt-ctctaccattccttttgtccctgagccaa 80  Q
    ||||||||||| ||| |||||||| |||||||||||| ||||||| |||||||||||||||||||||    
T  11849982 aacttttctttgagaatattagagtgtttctctattttctctacctttccttttgtccctgagccaa 11849916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 15 - 79
Target Start/End: Complemental strand, 11852240 - 11852175
Alignment:
Q  15 aacttttctttaagattattagagagtttctctattt-ctctaccattccttttgtccctgagcca 79  Q
    ||||||||||| ||| |||||||| |||||||||||| ||||||| ||||||||||||||||||||    
T  11852240 aacttttctttgagaatattagagtgtttctctattttctctacctttccttttgtccctgagcca 11852175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 9 - 79
Target Start/End: Original strand, 21743727 - 21743797
Alignment:
Q  9 aatataaacttttctttaagattattagagagtttctcta-tttctctaccattccttttgtccctgagcca 79  Q
    |||||||||||| |||| ||| |||||||||||||||||| |||||||||| ||||||||||||||| ||||    
T  21743727 aatataaacttt-ctttgagaatattagagagtttctctattttctctacctttccttttgtccctgggcca 21743797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 9 - 79
Target Start/End: Original strand, 37207999 - 37208070
Alignment:
Q  9 aatataaacttttctttaagattattagagagtttctcta-tttctctaccattccttttgtccctgagcca 79  Q
    ||||||| ||||||||  ||| |||||||||||||||||| |||||||||| | ||||||||||||||||||    
T  37207999 aatataatcttttcttcgagaatattagagagtttctctattttctctaccttcccttttgtccctgagcca 37208070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 79
Target Start/End: Complemental strand, 23164319 - 23164254
Alignment:
Q  15 aacttttctttaagattattagagagtttctcta-tttctctaccattccttttgtccctgagcca 79  Q
    ||||||||||| ||| |||||||| ||||||||| |||||||||| | ||||||||||||||||||    
T  23164319 aacttttctttgagaatattagagtgtttctctattttctctaccttcccttttgtccctgagcca 23164254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 15469197 - 15469258
Alignment:
Q  19 tttctttaagattattagagagtttctcta-tttctctaccattccttttgtccctgagcca 79  Q
    ||||||| ||| |||||||||||||||||| ||| | |||| ||||||||||||||||||||    
T  15469197 tttctttgagaatattagagagtttctctattttttttacctttccttttgtccctgagcca 15469258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 6e-16; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 9 - 79
Target Start/End: Complemental strand, 2403906 - 2403835
Alignment:
Q  9 aatataaacttttctttaagattattagagagtttctctattt-ctctaccattccttttgtccctgagcca 79  Q
    |||||||  |||||||| ||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||    
T  2403906 aatataatattttctttgagaatattagagagtttctctattttctctacctttccttttgtccctgagcca 2403835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 15 - 79
Target Start/End: Original strand, 29833981 - 29834046
Alignment:
Q  15 aacttttctttaagattattagagagtttctctattt-ctctaccattccttttgtccctgagcca 79  Q
    ||||||||||| ||| |||||||| |||||||||||| ||||||| ||||||||||||||||||||    
T  29833981 aacttttctttgagaatattagagtgtttctctattttctctacctttccttttgtccctgagcca 29834046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 9 - 79
Target Start/End: Complemental strand, 2410028 - 2409957
Alignment:
Q  9 aatataaacttttctttaagattattagagagtttctctattt-ctctaccattccttttgtccctgagcca 79  Q
    |||||||  |||||||| ||| ||||| ||||||||||||||| ||||||| ||||||||||||||||||||    
T  2410028 aatataatattttctttgagaatattatagagtttctctattttctctacctttccttttgtccctgagcca 2409957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 15 - 80
Target Start/End: Original strand, 10911470 - 10911536
Alignment:
Q  15 aacttttctttaagattattagagagtttctcta-tttctctaccattccttttgtccctgagccaa 80  Q
    ||||||||||| ||| |||||||| ||||||||| ||| |||||| |||||||||||||||||||||    
T  10911470 aacttttctttgagaatattagagtgtttctctattttatctacctttccttttgtccctgagccaa 10911536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 79
Target Start/End: Original strand, 13011816 - 13011881
Alignment:
Q  15 aacttttctttaagattattagagagtttctcta-tttctctaccattccttttgtccctgagcca 79  Q
    ||||||||||| ||| |||||||| ||||||||| |||||||||| |||||||||| |||||||||    
T  13011816 aacttttctttgagaatattagagtgtttctctattttctctacctttccttttgttcctgagcca 13011881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 79
Target Start/End: Complemental strand, 29833141 - 29833076
Alignment:
Q  15 aacttttctttaagattattagagagtttctcta-tttctctaccattccttttgtccctgagcca 79  Q
    ||||||||||| ||| |||||||| ||||||||| |||||||||| | ||||||||||||||||||    
T  29833141 aacttttctttgagaatattagagtgtttctctattttctctaccttcccttttgtccctgagcca 29833076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 79
Target Start/End: Original strand, 10909226 - 10909292
Alignment:
Q  15 aacttttc-tttaagattattagagagtttctctattt-ctctaccattccttttgtccctgagcca 79  Q
    |||||||| ||| ||| |||||||| |||||||||||| ||||||| ||||||||||||||||||||    
T  10909226 aacttttcgtttgagaatattagagtgtttctctattttctctacctttccttttgtccctgagcca 10909292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 15 - 79
Target Start/End: Complemental strand, 8933614 - 8933549
Alignment:
Q  15 aacttttctttaagattattagagagtttctctattt-ctctaccattccttttgtccctgagcca 79  Q
    ||||||||||| | | |||||||| |||||||||||| ||||||| || |||||||||||||||||    
T  8933614 aacttttctttgaaaatattagagtgtttctctattttctctaccttttcttttgtccctgagcca 8933549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 79
Target Start/End: Complemental strand, 734619 - 734579
Alignment:
Q  40 gtttctctattt-ctctaccattccttttgtccctgagcca 79  Q
    |||||||||||| ||||||| ||||||||||||||||||||    
T  734619 gtttctctattttctctacctttccttttgtccctgagcca 734579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 80
Target Start/End: Original strand, 3935073 - 3935139
Alignment:
Q  15 aacttttctttaagattattagagagtttctctattt-ctctaccattccttttgtccctgagccaa 80  Q
    ||||||||||| ||| |||||||| |||||||||||| ||||||| |||||||||||||||||||||    
T  3935073 aacttttctttgagaatattagagtgtttctctattttctctacctttccttttgtccctgagccaa 3935139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 15 - 79
Target Start/End: Original strand, 3932834 - 3932899
Alignment:
Q  15 aacttttctttaagattattagagagtttctctattt-ctctaccattccttttgtccctgagcca 79  Q
    ||||||||||| ||| |||||||| |||||||||||| ||||||| ||||||||||||||||||||    
T  3932834 aacttttctttgagaatattagagtgtttctctattttctctacctttccttttgtccctgagcca 3932899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 81
Target Start/End: Complemental strand, 8731241 - 8731174
Alignment:
Q  15 aacttttctttaagattattagagagtttctctatttc-tctaccattccttttgtccctgagccaaa 81  Q
    ||||||||||| ||| |||||||| ||||||||||||  |||||| ||||||||||||||||||||||    
T  8731241 aacttttctttgagaatattagagtgtttctctattttatctacctttccttttgtccctgagccaaa 8731174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 9 - 79
Target Start/End: Complemental strand, 8733566 - 8733495
Alignment:
Q  9 aatataaacttttctttaagattattagagagtttctcta-tttctctaccattccttttgtccctgagcca 79  Q
    ||||||| ||||||||| ||| |||||||||||||||||| |||||||||| |  |||||||||||||||||    
T  8733566 aatataatcttttctttgagaatattagagagtttctctattttctctaccttctcttttgtccctgagcca 8733495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 81
Target Start/End: Complemental strand, 36464278 - 36464211
Alignment:
Q  15 aacttttctttaagattattagagagtttctctattt-ctctaccattccttttgtccctgagccaaa 81  Q
    ||||||||||| ||| |||||||| ||||||| |||| ||||||| ||||||||||||||||||||||    
T  36464278 aacttttctttgagaatattagagtgtttctcaattttctctacctttccttttgtccctgagccaaa 36464211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 15 - 80
Target Start/End: Complemental strand, 8414555 - 8414489
Alignment:
Q  15 aacttttctttaagattattagagagtttctctattt-ctctaccattccttttgtccctgagccaa 80  Q
    ||||||||||| ||| |||||||| |||| ||||||| ||||||| |||||||||||||||||||||    
T  8414555 aacttttctttgagaatattagagtgtttttctattttctctacctttccttttgtccctgagccaa 8414489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 79
Target Start/End: Complemental strand, 16497018 - 16496953
Alignment:
Q  15 aacttttctttaagattattagagagtttctcta-tttctctaccattccttttgtccctgagcca 79  Q
    ||||||||||| ||| |||||||| ||||||||| |||||||||| | ||||||||||||||||||    
T  16497018 aacttttctttgagaatattagagtgtttctctattttctctaccttcccttttgtccctgagcca 16496953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 79
Target Start/End: Original strand, 18395432 - 18395497
Alignment:
Q  15 aacttttctttaagattattagagagtttctcta-tttctctaccattccttttgtccctgagcca 79  Q
    ||||||||||| ||| |||||||| ||||||||| |||||||||| |||||||||||||| |||||    
T  18395432 aacttttctttgagaatattagagtgtttctctattttctctacctttccttttgtccctaagcca 18395497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 79
Target Start/End: Complemental strand, 42678636 - 42678571
Alignment:
Q  15 aacttttctttaagattattagagagtttctctattt-ctctaccattccttttgtccctgagcca 79  Q
    ||||||||||| ||| |||||||| |||||| ||||| ||||||| ||||||||||||||||||||    
T  42678636 aacttttctttgagaatattagagtgtttctttattttctctacctttccttttgtccctgagcca 42678571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 9 - 79
Target Start/End: Original strand, 19789201 - 19789272
Alignment:
Q  9 aatataaacttttctttaagattattagagagtttctctattt-ctctaccattccttttgtccctgagcca 79  Q
    |||||||  ||| |||| ||| |||||||| |||||||||||| ||||||| ||||||||||||||||||||    
T  19789201 aatataacttttcctttgagaatattagagtgtttctctattttctctacctttccttttgtccctgagcca 19789272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 15 - 79
Target Start/End: Complemental strand, 16535200 - 16535135
Alignment:
Q  15 aacttttctttaagattattagagagtttctcta-tttctctaccattccttttgtccctgagcca 79  Q
    ||||||||||| ||| |||||||| ||||||||| |||||||||| | ||||||||||| ||||||    
T  16535200 aacttttctttgagaatattagagtgtttctctattttctctaccttcccttttgtccccgagcca 16535135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 15 - 79
Target Start/End: Original strand, 16630462 - 16630527
Alignment:
Q  15 aacttttctttaagattattagagagtttctcta-tttctctaccattccttttgtccctgagcca 79  Q
    ||||||||||| ||| |||||||| ||||||||| |||||||||| | ||||||||||| ||||||    
T  16630462 aacttttctttgagaatattagagtgtttctctattttctctaccttcccttttgtccccgagcca 16630527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 9 - 77
Target Start/End: Original strand, 19786895 - 19786964
Alignment:
Q  9 aatataaacttttctttaagattattagagagtttctctattt-ctctaccattccttttgtccctgagc 77  Q
    |||||||  ||| |||| ||| |||||||| |||||||||||| ||||||| ||||||||||||||||||    
T  19786895 aatataacttttcctttgagaatattagagtgtttctctattttctctacctttccttttgtccctgagc 19786964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 77
Target Start/End: Complemental strand, 19093912 - 19093846
Alignment:
Q  9 aatataaacttttctttaagattattagagagtttctctatttctctaccattccttttgtccctgagc 77  Q
    |||||||||||| |||| ||| ||||||||||||||| | ||||||||||  |||||||| ||||||||    
T  19093912 aatataaacttt-ctttgagaatattagagagtttctat-tttctctacctctccttttgaccctgagc 19093846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 80
Target Start/End: Original strand, 4533252 - 4533318
Alignment:
Q  15 aacttttctttaagattattagagagtttctctattt-ctctaccattccttttgtccctgagccaa 80  Q
    ||||||||||| ||| |||||||| |||||||||||| ||||||| |||||||||||||||||||||    
T  4533252 aacttttctttgagaatattagagtgtttctctattttctctacctttccttttgtccctgagccaa 4533318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 15 - 79
Target Start/End: Original strand, 4530955 - 4531020
Alignment:
Q  15 aacttttctttaagattattagagagtttctctattt-ctctaccattccttttgtccctgagcca 79  Q
    ||||||||||| ||| |||||||| |||||||||||| ||||||| ||||||||||||||||||||    
T  4530955 aacttttctttgagaatattagagtgtttctctattttctctacctttccttttgtccctgagcca 4531020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 15 - 79
Target Start/End: Complemental strand, 5164216 - 5164151
Alignment:
Q  15 aacttttctttaagattattagagagtttctctattt-ctctaccattccttttgtccctgagcca 79  Q
    ||||||||||| ||| |||||||| |||||||||||| ||||||| ||||||||||||||||||||    
T  5164216 aacttttctttgagaatattagagtgtttctctattttctctacctttccttttgtccctgagcca 5164151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 15 - 79
Target Start/End: Complemental strand, 42275621 - 42275556
Alignment:
Q  15 aacttttctttaagattattagagagtttctctattt-ctctaccattccttttgtccctgagcca 79  Q
    ||||||||||| ||| |||||||| |||||||||||| ||||||| ||||||||||||||||||||    
T  42275621 aacttttctttgagaatattagagtgtttctctattttctctacctttccttttgtccctgagcca 42275556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 15 - 79
Target Start/End: Complemental strand, 42277847 - 42277782
Alignment:
Q  15 aacttttctttaagattattagagagtttctctattt-ctctaccattccttttgtccctgagcca 79  Q
    ||||||||||| ||| |||||||| |||||||||||| ||||||| ||||||||||||||||||||    
T  42277847 aacttttctttgagaatattagagtgtttctctattttctctacctttccttttgtccctgagcca 42277782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 73
Target Start/End: Complemental strand, 8995135 - 8995076
Alignment:
Q  15 aacttttctttaagattattagagagtttctcta-tttctctaccattccttttgtccct 73  Q
    ||||||||||| ||| |||||||||||||||||| |||||||||| ||||||||||||||    
T  8995135 aacttttctttgagaatattagagagtttctctattttctctacctttccttttgtccct 8995076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 18 - 79
Target Start/End: Complemental strand, 39816151 - 39816089
Alignment:
Q  18 ttttctttaagattattagagagtttctcta-tttctctaccattccttttgtccctgagcca 79  Q
    |||||||| ||| |||||||||||||||||| |||||||||| |||||||||||| |||||||    
T  39816151 ttttctttgagaatattagagagtttctctattttctctacctttccttttgtccgtgagcca 39816089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 73
Target Start/End: Original strand, 15730034 - 15730093
Alignment:
Q  15 aacttttctttaagattattagagagtttctcta-tttctctaccattccttttgtccct 73  Q
    ||||||| ||| ||| |||||||||||||||||| |||||||||| ||||||||||||||    
T  15730034 aacttttatttgagaatattagagagtttctctattttctctacctttccttttgtccct 15730093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 9 - 79
Target Start/End: Original strand, 31486998 - 31487069
Alignment:
Q  9 aatataaacttttctttaagattattagagagtttctctattt-ctctaccattccttttgtccctgagcca 79  Q
    |||||||  ||| |||| ||| |||||||| |||||||||||| ||||||| ||||||||||||||||||||    
T  31486998 aatataacttttcctttgagaatattagagtgtttctctattttctctacctttccttttgtccctgagcca 31487069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 9 - 81
Target Start/End: Original strand, 31489282 - 31489355
Alignment:
Q  9 aatataaacttttctttaagattattagagagtttctctattt-ctctaccattccttttgtccctgagccaaa 81  Q
    |||||||  ||| |||| ||| |||||||| |||||||||||| ||||||| |||||||||||||| |||||||    
T  31489282 aatataacttttcctttgagaatattagagtgtttctctattttctctacctttccttttgtccctaagccaaa 31489355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 23860126 - 23860188
Alignment:
Q  19 tttctttaagattattagagagtttctcta-tttctctaccattccttttgtccctgagccaa 80  Q
    ||||||| ||| |||||||||||||||||| ||||| | |  |||||||||||||||||||||    
T  23860126 tttctttgagaatattagagagtttctctattttctatgcttttccttttgtccctgagccaa 23860188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 34576665 - 34576612
Alignment:
Q  19 tttctttaagattattagagagtttctcta-tttctctaccattccttttgtcc 71  Q
    ||||||| ||| |||||||||||||||||| |||||||||| | ||||||||||    
T  34576665 tttctttgagaatattagagagtttctctattttctctaccttaccttttgtcc 34576612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0098 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 9 - 79
Target Start/End: Complemental strand, 3777 - 3707
Alignment:
Q  9 aatataaacttttctttaagattattagagagtttctctattt-ctctaccattccttttgtccctgagcca 79  Q
    |||||||||||| |||| ||| |||||||||||| |||||||| ||||||| ||||||||||||||||||||    
T  3777 aatataaacttt-ctttgagaatattagagagttactctattttctctacctttccttttgtccctgagcca 3707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 81
Target Start/End: Complemental strand, 24519218 - 24519151
Alignment:
Q  15 aacttttctttaagattattagagagtttctctattt-ctctaccattccttttgtccctgagccaaa 81  Q
    ||||||||||  ||| |||||||| |||||||||||| ||||||| ||||||||||||||||||||||    
T  24519218 aacttttcttagagaatattagagtgtttctctattttctctacctttccttttgtccctgagccaaa 24519151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 79
Target Start/End: Original strand, 4877111 - 4877176
Alignment:
Q  15 aacttttctttaagattattagagagtttctctattt-ctctaccattccttttgtccctgagcca 79  Q
    |||||||| || ||| |||||||| |||||||||||| ||||||| ||||||||||||||||||||    
T  4877111 aacttttccttgagaatattagagtgtttctctattttctctacctttccttttgtccctgagcca 4877176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 79
Target Start/End: Original strand, 4879439 - 4879504
Alignment:
Q  15 aacttttctttaagattattagagagtttctctattt-ctctaccattccttttgtccctgagcca 79  Q
    |||||||| || ||| |||||||| |||||||||||| ||||||| ||||||||||||||||||||    
T  4879439 aacttttccttgagaatattagagtgtttctctattttctctacctttccttttgtccctgagcca 4879504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 9 - 79
Target Start/End: Complemental strand, 36379536 - 36379465
Alignment:
Q  9 aatataaacttttctttaagattattagagagtttctctattt-ctctaccattccttttgtccctgagcca 79  Q
    |||||||  ||| |||| ||| |||||||| |||||||||||| ||||||| ||||||||||||||||||||    
T  36379536 aatataacttttcctttgagaatattagagtgtttctctattttctctacctttccttttgtccctgagcca 36379465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 9 - 79
Target Start/End: Complemental strand, 21268191 - 21268120
Alignment:
Q  9 aatataaacttttctttaagattattagagagtttctctattt-ctctaccattccttttgtccctgagcca 79  Q
    |||||||  ||| |||| ||| |||||||| |||||||||||| ||||||| || |||||||||||||||||    
T  21268191 aatataacttttcctttgagaatattagagtgtttctctattttctctaccttttcttttgtccctgagcca 21268120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0599 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0599
Description:

Target: scaffold0599; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 79
Target Start/End: Original strand, 1736 - 1801
Alignment:
Q  15 aacttttctttaagattattagagagtttctctattt-ctctaccattccttttgtccctgagcca 79  Q
    ||||||||||| ||  |||||||| |||||||||||| ||||||| ||||||||||||||||||||    
T  1736 aacttttctttgaggatattagagtgtttctctattttctctacctttccttttgtccctgagcca 1801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 29453 - 29514
Alignment:
Q  19 tttctttaagattattagagagtttctctattt-ctctaccattccttttgtccctgagcca 79  Q
    ||||||| |||  |||||||||||||||||||| ||||||| ||||||||||||||||||||    
T  29453 tttctttgagaacattagagagtttctctattttctctacctttccttttgtccctgagcca 29514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 31768 - 31829
Alignment:
Q  19 tttctttaagattattagagagtttctctattt-ctctaccattccttttgtccctgagcca 79  Q
    ||||||| |||  |||||||||||||||||||| ||||||| |||||||||||| |||||||    
T  31768 tttctttgagaacattagagagtttctctattttctctacctttccttttgtccttgagcca 31829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 79
Target Start/End: Original strand, 88466 - 88531
Alignment:
Q  15 aacttttctttaagattattagagagtttctctattt-ctctaccattccttttgtccctgagcca 79  Q
    ||||||||||| ||| ||||||||  ||||||||||| ||||||| ||||||||||||||||||||    
T  88466 aacttttctttgagaatattagagtctttctctattttctctacctttccttttgtccctgagcca 88531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 20642300 - 20642359
Alignment:
Q  19 tttctttaagattattagagagtttctcta-tttctctaccattccttttgtccctgagc 77  Q
    ||||||| ||| ||||||||| |||||||| |||||||||| ||| ||||||||||||||    
T  20642300 tttctttgagaatattagagaatttctctattttctctacctttcattttgtccctgagc 20642359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1361 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold1361
Description:

Target: scaffold1361; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 79
Target Start/End: Original strand, 74 - 140
Alignment:
Q  15 aacttttc-tttaagattattagagagtttctctattt-ctctaccattccttttgtccctgagcca 79  Q
    |||||||| ||| ||| ||||| || |||||||||||| ||||||| ||||||||||||||||||||    
T  74 aacttttcgtttgagaatattaaagtgtttctctattttctctacctttccttttgtccctgagcca 140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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