View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6697_low_1 (Length: 774)

Name: NF6697_low_1
Description: NF6697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6697_low_1
NF6697_low_1
[»] chr8 (1 HSPs)
chr8 (12-774)||(2097337-2098096)


Alignment Details
Target: chr8 (Bit Score: 713; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 713; E-Value: 0
Query Start/End: Original strand, 12 - 774
Target Start/End: Complemental strand, 2098096 - 2097337
Alignment:
Q  12 gtttggtgttcccgtgttggtgactttcctggtaatgtaataccacgggttggagataccctaataatggagtatttgttttttaattggaggacgacac 111  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  2098096 gtttggtgttcccgtgttggtgactttcctcgtaatgtaataccacgggttggagataccctaataatggagtatttgttttataattggaggacgacac 2097997  T
Q  112 agaagtactagtataaaagtacgaaatcatgattgaaaagatacaacagttttaccatcctatcatcattgaggaaatgcaaacacctgaataaatagga 211  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  2097996 agaagtactagtataaaagtacgaaatcatgaatgaaaagatacaacagttttaccatcctatcatcattgaggaaatgcaaacacctgaaaaaatagga 2097897  T
Q  212 ggagaggcggaaatgaggaaatgcaacttcaagggagaggtgattaaagacttaggagacatcatttacaaaatgtttgcacttttggttgcattggtaa 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2097896 ggagaggcggaaatgaggaaatgcaacttcaagggagaggtgattaaaggcttaggagacatcatttacaaaatgtttgcacttttggttgcattggtaa 2097797  T
Q  312 cactcaagttcacaaagattggcgaaacgctattcgcaaaacagtatactccttgggttgtagctgcagttttgatatttttcttactctggattttttc 411  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  2097796 cactcaagttcacaaagattggcgaaacgctattcgcaaaacagtatactccttgggttgtagctgcagttttgatatttttcttactttggattttttc 2097697  T
Q  412 catcctacttataccagatcatatcactattgaaaccttgtttccaatctcactcatgtacggtcttacatgtgctgtgtccttcgcagcattgacaatc 511  Q
    ||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  2097696 catc---cttataccagatcatatcactattgaaaccttgtttccaatctcactcatgtacggtcttacatgtgctgtgtccttcgcagcgttgacaatc 2097600  T
Q  512 attttaccaaacattgttgctatactcaatttgaccttatggctcattgttttctttgttattctttacattaactatcaaaatcaaaacctatttgtag 611  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2097599 attttaccaaacattgttgctatactcaatttgaccttatggctcattgttttctttgttattctttacattaactatcaaaatcaaaacctatttgtag 2097500  T
Q  612 ctgcacctcgtgacgaggaagctgcaactcttgccgaggcagtggcatctggcagcaagctggaagtagaagtaggtttacagaagtttgatgtcaatgg 711  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2097499 ctgcacctcgtgacgaggaagctgcaactcttgccgaggtagtggcatctggcagcaagctggaagtagaagtaggtttacagaagtttgatgtcaatgg 2097400  T
Q  712 gagcagccgtgagctgggttggatcagcgacccaggctttgacaccgatggcgaaagcagggt 774  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2097399 gagcagccgtgacctgggttggatcagcgacccaggctttgacaccgatggcgaaagcagggt 2097337  T

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