View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6697_low_11 (Length: 327)
Name: NF6697_low_11
Description: NF6697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6697_low_11 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 98 - 324
Target Start/End: Original strand, 44753377 - 44753605
Alignment:
| Q |
98 |
atggcgagttttagcatggaccaattgcataattttcccatctcaagctcatttgtttttacgggtcactaccttgtttcttccggttattacctttaca |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||| | |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
44753377 |
atggcgagttttagcatggaccaattgcataatttttccatcttaggctcatttgtttttacgggttactaccttgtttcttccggttattacctttaca |
44753476 |
T |
|
| Q |
198 |
ttacc--nnnnnnnnnaaatcgattatacatatatatcacaggtgttaacagcagaannnnnnnnnnnnnaatnnnnnnntcacatgtattatcaacaca |
295 |
Q |
| |
|
||||| ||||||||||||||||||||||||| |||||||||||| || ||| |||||||||||||||||||| |
|
|
| T |
44753477 |
ttaccttttttttttaaaatcgattatacatatatatcacaagtgttaacagcataattttttcttttttaataaaaaaatcacatgtattatcaacaca |
44753576 |
T |
|
| Q |
296 |
agccagttttccgaacccgagcacatatt |
324 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
44753577 |
agccagttttccgaacccgagcacatatt |
44753605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 106; Significance: 5e-53; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 100 - 324
Target Start/End: Complemental strand, 37760890 - 37760666
Alignment:
| Q |
100 |
ggcgagttttagcatggaccaattgcataattttcccatctcaagctcatttgtttttacgggtcactaccttgtttcttccggttattacctttacatt |
199 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37760890 |
ggcgagttttagcatagaccaattgcataattttcccatcttaggctcatttgtttttacgggtcactaccttgtttcttccggttattacctttacatt |
37760791 |
T |
|
| Q |
200 |
accnnnnnnnnnaaatcgattatacatatatatcacaggtgttaacagcagaannnnnnnnnnnnnaatnnnnnnntcacatgtattatcaacacaagcc |
299 |
Q |
| |
|
| | ||||||||||||||||||||||||| ||||||||| || || ||| |||||||||||||||||||||||| |
|
|
| T |
37760790 |
atcttttttttaaaatcgattatacatatatatcacaagtgttaacaacataattttttcttttttaataaaaaaatcacatgtattatcaacacaagcc |
37760691 |
T |
|
| Q |
300 |
agttttccgaacccgagcacatatt |
324 |
Q |
| |
|
||||||||||||||||||| ||||| |
|
|
| T |
37760690 |
agttttccgaacccgagcatatatt |
37760666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 102; Significance: 1e-50; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 100 - 252
Target Start/End: Original strand, 35181727 - 35181879
Alignment:
| Q |
100 |
ggcgagttttagcatggaccaattgcataattttcccatctcaagctcatttgtttttacgggtcactaccttgtttcttccggttattacctttacatt |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| | |||||||| ||||||||||||| ||||||||| ||||| ||||||||||||||||| |
|
|
| T |
35181727 |
ggcgagttttagcatggaccaattgcataattttcccatcttaggctcatttatttttacgggtcattaccttgttccttcccgttattacctttacatt |
35181826 |
T |
|
| Q |
200 |
accnnnnnnnnnaaatcgattatacatatatatcacaggtgttaacagcagaa |
252 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35181827 |
acctttttttttaaatcgattatacatatatatcacaggtgttaacagcagaa |
35181879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 100 - 324
Target Start/End: Complemental strand, 24175525 - 24175299
Alignment:
| Q |
100 |
ggcgagttttagcatggaccaattgcataattttcccatctcaagctcatttgtttttacgggtcactaccttgtttcttccggttattacctttacatt |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
24175525 |
ggcgagttttagcatggaccaattgcataattttcccatcttaggctcatttatttttacgggtcactaccttgtttctttcggttattacctttacatt |
24175426 |
T |
|
| Q |
200 |
ac--cnnnnnnnnnaaatcgattatacatatatatcacaggtgttaacagcagaa-nnnnnnnnnnnnnaatnnnnnnntcacatgtattatcaacacaa |
296 |
Q |
| |
|
|| ||||| ||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||| |
|
|
| T |
24175425 |
acttttttttttttaaatc-attatacatatatatcacaggtgttaacaacagaatttttttcatttttaataaaaaaatcacatgtattatcaacacaa |
24175327 |
T |
|
| Q |
297 |
gccagttttccgaacccgagcacatatt |
324 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
24175326 |
gccagttttccgaacccgagcacatatt |
24175299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 276 - 324
Target Start/End: Original strand, 35181905 - 35181953
Alignment:
| Q |
276 |
tcacatgtattatcaacacaagccagttttccgaacccgagcacatatt |
324 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35181905 |
tcacatgtattatcaacacaagccagttttccgaacccgagcacatatt |
35181953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 94; Significance: 7e-46; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 6 - 99
Target Start/End: Complemental strand, 41364926 - 41364833
Alignment:
| Q |
6 |
agtttgtttttgtttcatgtgtttagcgcagtgcttgcttttgatgaaaagcatgcaacatgacccatgcatgtgtgatattttaatcatatat |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41364926 |
agtttgtttttgtttcatgtgtttagcgcagtgcttgcttttgatgaaaagcatgcaacatgacccatgcatgtgtgatattttaatcatatat |
41364833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 103 - 194
Target Start/End: Original strand, 13229148 - 13229239
Alignment:
| Q |
103 |
gagttttagcatggaccaattgcataattttcccatctcaagctcatttgtttttacgggtcactaccttgtttcttccggttattaccttt |
194 |
Q |
| |
|
||||||||||||| ||| ||||||||||| ||||||| | ||||||||||||||||| ||||||| ||||||||| ||||||||||||||| |
|
|
| T |
13229148 |
gagttttagcatgagccagttgcataatttccccatcttaggctcatttgtttttacgagtcactatcttgtttctaccggttattaccttt |
13229239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University