View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6697_low_19 (Length: 244)
Name: NF6697_low_19
Description: NF6697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6697_low_19 |
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| [»] chr1 (5 HSPs) |
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| [»] scaffold0011 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-110; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 28045662 - 28045905
Alignment:
| Q |
1 |
atcagaatagcaagaagtgtaaaaatataaatggactatctaattactctctcgatcctcataagaaaaagtttgatcaacaaaaattgatgtatctgat |
100 |
Q |
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|||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |||||||||||||||| |
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| T |
28045662 |
atcaaaataggaagaagtgtaaaaatataaatggactatctaattactctctcgatcctcataagaaaaattttaatcaacaagaattgatgtatctgat |
28045761 |
T |
|
| Q |
101 |
ctgaattttgagtcagatatatcaactttcgttaacctaattttttaataataagaccgaagtgagtactta-ttttaaaaatttacatttaaatctact |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |
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| T |
28045762 |
ctgaattttgagtcagatatatcaactttcgttaacctaattttttaataataagaccgaagtgagtacttatttttaaaaatttacatttcaatctact |
28045861 |
T |
|
| Q |
200 |
ttatatttgatgaggttgaatttttggtcctctattttattcgac |
244 |
Q |
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|||||||||||||||||||||||||||| ||||||||| |||||| |
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| T |
28045862 |
ttatatttgatgaggttgaatttttggt-ctctattttgttcgac |
28045905 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 133
Target Start/End: Complemental strand, 21537963 - 21537907
Alignment:
| Q |
77 |
tcaacaaaaattgatgtatctgatctgaattttgagtcagatatatcaactttcgtt |
133 |
Q |
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| T |
21537963 |
tcaacaaaagttgatgtatctgaactaaaatttgaatcagatacatcaactttcgtt |
21537907 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 137
Target Start/End: Original strand, 30800461 - 30800521
Alignment:
| Q |
77 |
tcaacaaaaattgatgtatctgatctgaattttgagtcagatatatcaactttcgttaacc |
137 |
Q |
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| T |
30800461 |
tcaacaaaagttgatgtatctatactgaattttgaatcagatacatcaacttttgttaacc |
30800521 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 109
Target Start/End: Original strand, 11897074 - 11897122
Alignment:
| Q |
61 |
ataagaaaaagtttgatcaacaaaaattgatgtatctgatctgaatttt |
109 |
Q |
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|||||| |||||| | ||||||||| ||||||||||||| ||||||||| |
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| T |
11897074 |
ataagagaaagttaggtcaacaaaagttgatgtatctgaactgaatttt |
11897122 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 129
Target Start/End: Complemental strand, 16448218 - 16448150
Alignment:
| Q |
61 |
ataagaaaaagtttgatcaacaaaaattgatgtatctgatctgaattttgagtcagatatatcaacttt |
129 |
Q |
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|||||| |||||| | ||||||||| |||||||||||| ||||||||||| |||||| || |||||| |
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| T |
16448218 |
ataagagaaagttgggtcaacaaaagttgatgtatctggactgaattttgaaccagatacataaacttt |
16448150 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 61 - 129
Target Start/End: Complemental strand, 42842936 - 42842868
Alignment:
| Q |
61 |
ataagaaaaagtttgatcaacaaaaattgatgtatctgatctgaattttgagtcagatatatcaacttt |
129 |
Q |
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|||||||||| | |||||||||||||||||||||| ||| || |||||||| |||||| |||||||||| |
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| T |
42842936 |
ataagaaaaaatctgatcaacaaaaattgatgtatttgaactaaattttgaatcagatgtatcaacttt |
42842868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 61 - 129
Target Start/End: Complemental strand, 24692088 - 24692021
Alignment:
| Q |
61 |
ataagaaaaagtttgatcaacaaaaattgatgtatctgatctgaattttgagtcagatatatcaacttt |
129 |
Q |
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|
||||||||||||| | ||||||||| ||||||||||||| ||||||||| | |||||||||||||||| |
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| T |
24692088 |
ataagaaaaagttaggtcaacaaaagttgatgtatctgaactgaatttt-aaccagatatatcaacttt |
24692021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 61 - 131
Target Start/End: Original strand, 28463631 - 28463701
Alignment:
| Q |
61 |
ataagaaaaagtttgatcaacaaaaattgatgtatctgatctgaattttgagtcagatatatcaactttcg |
131 |
Q |
| |
|
|||||| |||||| | ||||||||| ||||||||| || ||||||||||| |||||||||||||||||| |
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| T |
28463631 |
ataagagaaagttgggtcaacaaaagttgatgtatttggactgaattttgaaccagatatatcaactttcg |
28463701 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 98
Target Start/End: Complemental strand, 33057704 - 33057667
Alignment:
| Q |
61 |
ataagaaaaagtttgatcaacaaaaattgatgtatctg |
98 |
Q |
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|||||| |||||||| |||||||||||||||||||||| |
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| T |
33057704 |
ataagagaaagtttggtcaacaaaaattgatgtatctg |
33057667 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 61 - 137
Target Start/End: Complemental strand, 7269515 - 7269439
Alignment:
| Q |
61 |
ataagaaaaagtttgatcaacaaaaattgatgtatctgatctgaattttgagtcagatatatcaactttcgttaacc |
137 |
Q |
| |
|
||||||||||||| | ||||||||||||||||||||| | ||||||||| | ||||| ||||||||| ||||||| |
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| T |
7269515 |
ataagaaaaagttgggtcaacaaaaattgatgtatctaaactgaatttttaaccagatgcatcaacttttgttaacc |
7269439 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 79 - 144
Target Start/End: Original strand, 14706734 - 14706799
Alignment:
| Q |
79 |
aacaaaaattgatgtatctgatctgaattttgagtcagatatatcaactttcgttaacctaatttt |
144 |
Q |
| |
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||||||| ||||||||||||| |||||| | | ||||||||||||||||| ||| ||| |||||| |
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| T |
14706734 |
aacaaaagttgatgtatctgaattgaattgttaatcagatatatcaacttttgttgaccgaatttt |
14706799 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 93
Target Start/End: Original strand, 19418992 - 19419020
Alignment:
| Q |
65 |
gaaaaagtttgatcaacaaaaattgatgt |
93 |
Q |
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|
||||||||||||||||||||||||||||| |
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| T |
19418992 |
gaaaaagtttgatcaacaaaaattgatgt |
19419020 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 141
Target Start/End: Complemental strand, 231413 - 231333
Alignment:
| Q |
61 |
ataagaaaaagtttgatcaacaaaaattgatgtatctgatctgaattttgagtcagatatatcaactttcgttaacctaat |
141 |
Q |
| |
|
|||||| |||||| ||||||||||| || ||||||||| ||||||||||| || |||||||||||| ||| ||||||| |
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|
| T |
231413 |
ataagagaaagttggatcaacaaaagtttatgtatctggactgaattttgaactaggtatatcaacttttgttgacctaat |
231333 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 129
Target Start/End: Original strand, 17344233 - 17344301
Alignment:
| Q |
61 |
ataagaaaaagtttgatcaacaaaaattgatgtatctgatctgaattttgagtcagatatatcaacttt |
129 |
Q |
| |
|
|||||| |||||| |||||||||| ||||||||||||| ||||||||| | || |||| ||||||||| |
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| T |
17344233 |
ataagagaaagttaaatcaacaaaagttgatgtatctgaactgaatttttaatcggatacatcaacttt |
17344301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 60 - 129
Target Start/End: Original strand, 35663933 - 35664002
Alignment:
| Q |
60 |
cataagaaaaagtttgatcaacaaaaattgatgtatctgatctgaattttgagtcagatatatcaacttt |
129 |
Q |
| |
|
||||||| |||||| | | |||||||||||||||||||| || |||||||| |||||| ||||||||| |
|
|
| T |
35663933 |
cataagagaaagttgggtaaacaaaaattgatgtatctggtccaaattttgaaccagatacatcaacttt |
35664002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 101
Target Start/End: Complemental strand, 38080697 - 38080657
Alignment:
| Q |
61 |
ataagaaaaagtttgatcaacaaaaattgatgtatctgatc |
101 |
Q |
| |
|
|||||||||| ||||||||||| |||||||||||| ||||| |
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|
| T |
38080697 |
ataagaaaaaatttgatcaacataaattgatgtatttgatc |
38080657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 109
Target Start/End: Original strand, 16734803 - 16734851
Alignment:
| Q |
61 |
ataagaaaaagtttgatcaacaaaaattgatgtatctgatctgaatttt |
109 |
Q |
| |
|
|||||| |||||||| ||||||||| |||||||||||| ||||||||| |
|
|
| T |
16734803 |
ataagagaaagtttggtcaacaaaagttgatgtatctggactgaatttt |
16734851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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