View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6697_low_20 (Length: 244)
Name: NF6697_low_20
Description: NF6697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6697_low_20 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 43144709 - 43144469
Alignment:
| Q |
1 |
ctaacattgcagctaagttgaaaaataacccaattcagcatcagaattctgccaaaatgttcacatgaatcaacactaacaacctacctaaaaagaaaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43144709 |
ctaacattgcagctaagttgaaaaataacccaattcagcatcagaattctgccaaaatgttcacatgaatcaacactaacaacctacctaaaaagaaaaa |
43144610 |
T |
|
| Q |
101 |
ttattgtgctcaccagcagcagaataggccatttcttcaagtgagtatcccttactataaaatctaaatactgctgcaagatgaatcattgccatcaaga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43144609 |
ttattgtgctcaccagcagcagaataggccatttcttcaagtgagtatcccttactataaaatctaaatactgctgcaagatgaatcattgccatcaaga |
43144510 |
T |
|
| Q |
201 |
atgatgctaccaatgcccatgacacatagcagtgaacacca |
241 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43144509 |
atgatgctaccaatgcccatgacacatagcagtgaacacca |
43144469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 43157071 - 43156827
Alignment:
| Q |
1 |
ctaacattgcagctaagttgaaaaataaccca-attcagcatcagaattctgccaaaatgttcacatgaatcaacactaacaacctacctaaaaagaaaa |
99 |
Q |
| |
|
|||||| |||| |||| ||||| |||||| || ||||||||||||||| || ||||||||||||||||||||||||||||||||||||| |||||| ||| |
|
|
| T |
43157071 |
ctaacactgcaactaaattgaacaataacgcatattcagcatcagaatcctcccaaaatgttcacatgaatcaacactaacaacctaccaaaaaaggaaa |
43156972 |
T |
|
| Q |
100 |
attattgtgctcaccagcagcagaataggccatttcttcaagtgagtatcccttactataaaatctaaatactgctgcaagatgaatcattgccatcaag |
199 |
Q |
| |
|
| || ||||||||||||||| || ||||||| ||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||| |||| || || |
|
|
| T |
43156971 |
agtagtgtgctcaccagcagaagtataggccgtttcttcaagtgaatatccgttactataaaatctaaatgctgctgcaagatgaatcgttgcaataaaa |
43156872 |
T |
|
| Q |
200 |
aatgatgctaccaatgcccatgacacatagcagtgaacaccaaac |
244 |
Q |
| |
|
|||| |||||| ||| ||||||||| ||||||||||||||||||| |
|
|
| T |
43156871 |
aatggtgctacgaatccccatgacaaatagcagtgaacaccaaac |
43156827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 72 - 154
Target Start/End: Original strand, 33832991 - 33833073
Alignment:
| Q |
72 |
aacactaacaacctacctaaaaagaaaaattattgtgctcaccagcagcagaataggccatttcttcaagtgagtatccctta |
154 |
Q |
| |
|
||||||||||||||||||||||||||||| | ||| ||||||| ||| || ||||||||||| || | |||||| |||||| |
|
|
| T |
33832991 |
aacactaacaacctacctaaaaagaaaaagttgtgttctcaccaccagaagtgtaggccatttcctcgactgagtaaccctta |
33833073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University