View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6697_low_26 (Length: 211)

Name: NF6697_low_26
Description: NF6697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6697_low_26
NF6697_low_26
[»] chr6 (10 HSPs)
chr6 (18-177)||(31564958-31565117)
chr6 (18-200)||(33414568-33414750)
chr6 (18-200)||(33269541-33269727)
chr6 (18-200)||(33258194-33258378)
chr6 (73-189)||(33384040-33384156)
chr6 (18-200)||(33395052-33395236)
chr6 (54-150)||(33278972-33279068)
chr6 (23-147)||(33280358-33280482)
chr6 (143-187)||(33293034-33293078)
chr6 (22-84)||(33293090-33293152)
[»] chr2 (1 HSPs)
chr2 (18-200)||(17447799-17447981)
[»] scaffold0428 (3 HSPs)
scaffold0428 (18-200)||(2315-2499)
scaffold0428 (54-150)||(15185-15281)
scaffold0428 (23-147)||(13771-13895)


Alignment Details
Target: chr6 (Bit Score: 148; Significance: 3e-78; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 18 - 177
Target Start/End: Original strand, 31564958 - 31565117
Alignment:
Q  18 catccgctgacaagaaatccggaagacgagttgctgaaggaagaatcgctacatacattcacgattcacacattagtgttctaattgaagtgaaatgtga 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  31564958 catccgctgacaagaaatccggaagacgagttgctgaaggaagaatcggtacatacattcacgattcacgcattagtgttctaattgaagtgaaatgtga 31565057  T
Q  118 aacggactttatcggtagaagtgagaaattcaaggagtttgttcatgatcttgcaatgca 177  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  31565058 aacggactttatcggtagaagtgagaaattcaaggagttggttcatgatcttgcaatgca 31565117  T

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Target: chr6; HSP #2
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 18 - 200
Target Start/End: Complemental strand, 33414750 - 33414568
Alignment:
Q  18 catccgctgacaagaaatccggaagacgagttgctgaaggaagaatcgctacatacattcacgattcacacattagtgttctaattgaagtgaaatgtga 117  Q
    |||||||||| |||||||||||||||| ||  |||||||||||||||| |||||||||||||||| |||  ||| ||||||||||||||||||| |||||    
T  33414750 catccgctgataagaaatccggaagactagcagctgaaggaagaatcggtacatacattcacgatgcacgtattggtgttctaattgaagtgaactgtga 33414651  T
Q  118 aacggactttatcggtagaagtgagaaattcaaggagtttgttcatgatcttgcaatgcaagttgctgcttgtccacaggttc 200  Q
    |||||||||| | || ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||    
T  33414650 aacggactttgttggcagaagtgagaaattcaaggagttggttgatgatcttgcaatgcaagttgctgcttgtccacaggttc 33414568  T

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Target: chr6; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 18 - 200
Target Start/End: Complemental strand, 33269727 - 33269541
Alignment:
Q  18 catccgctgacaagaaatccggaagacgagttgctgaaggaagaatcgctacata----cattcacgattcacacattagtgttctaattgaagtgaaat 113  Q
    |||||||||| ||||| || | ||||| ||  ||||||| |||||||| ||||||    ||||||| || ||  |||  ||||||||||||||||||| |    
T  33269727 catccgctgataagaagtctgcaagactagcagctgaagaaagaatcggtacatatatacattcacaatgcatgcatcggtgttctaattgaagtgaact 33269628  T
Q  114 gtgaaacggactttatcggtagaagtgagaaattcaaggagtttgttcatgatcttgcaatgcaagttgctgcttgtccacaggttc 200  Q
    ||||||| |||||| | || |||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||    
T  33269627 gtgaaaccgactttgttggcagaagtgagaaattcaagaagttggttgatgatcttgcaatgcaagttgctgcttgtccacaggttc 33269541  T

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Target: chr6; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 18 - 200
Target Start/End: Complemental strand, 33258378 - 33258194
Alignment:
Q  18 catccgctgacaagaaatccggaagacgagttgctgaaggaagaatcgctacata-cattcacgattcacacattagtgttctaattgaagtgaaatgtg 116  Q
    |||||||||| ||||||||||| |||| ||  |  ||||||||||||| |||||| || || ||||||||||||| |||||||||||||||||||  |||    
T  33258378 catccgctgataagaaatccgggagactagcagaagaaggaagaatcggtacatatcactcgcgattcacacattggtgttctaattgaagtgaacggtg 33258279  T
Q  117 aaacggactttatcggtagaagtgagaaattcaaggagtttgttcatgatcttgcaatgcaagttgctgctt-gtccacaggttc 200  Q
    |||| |||||| | || |||||||||||||| |||||||| ||| | ||||||||||||||||| |||  || ||||||||||||    
T  33258278 aaaccgactttgttggcagaagtgagaaatttaaggagttggttgacgatcttgcaatgcaagtagctttttggtccacaggttc 33258194  T

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Target: chr6; HSP #5
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 73 - 189
Target Start/End: Complemental strand, 33384156 - 33384040
Alignment:
Q  73 cattcacgattcacacattagtgttctaattgaagtgaaatgtgaaacggactttatcggtagaagtgagaaattcaaggagtttgttcatgatcttgca 172  Q
    ||||||| ||||||||||  ||||||||||||||||||| ||| |||| |||||| |||| |||||||||||| | |||||||| ||| |||||||||||    
T  33384156 cattcactattcacacatcggtgttctaattgaagtgaactgtcaaaccgactttgtcggcagaagtgagaaaattaaggagttggttgatgatcttgca 33384057  T
Q  173 atgcaagttgctgcttg 189  Q
    |||||||| ||||||||    
T  33384056 atgcaagtggctgcttg 33384040  T

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Target: chr6; HSP #6
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 18 - 200
Target Start/End: Complemental strand, 33395236 - 33395052
Alignment:
Q  18 catccgctgacaagaaatccggaagacgagttgctgaaggaagaatcgctacatacattcacgattcacacattagtgttctaattgaagtgaaatgtga 117  Q
    |||| ||||||||||||||||| || | ||  |||||||||||||||| || ||||||| ||||| ||| |||   |||||| ||||||||||| |||||    
T  33395236 catcagctgacaagaaatccggtaggctagcagctgaaggaagaatcggtaaatacattgacgatgcacgcatctatgttctgattgaagtgaactgtga 33395137  T
Q  118 aacggactttatcgg--tagaagtgagaaattcaaggagtttgttcatgatcttgcaatgcaagttgctgcttgtccacaggttc 200  Q
    ||| |||||| | ||   |||||||| | |||||||||||| |||  ||||||| ||||||||   |||||||||||||||||||    
T  33395136 aaccgactttgttggcacagaagtgatagattcaaggagttggttgctgatctttcaatgcaataggctgcttgtccacaggttc 33395052  T

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Target: chr6; HSP #7
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 54 - 150
Target Start/End: Complemental strand, 33279068 - 33278972
Alignment:
Q  54 aaggaagaatcgctacatacattcacgattcacacattagtgttctaattgaagtgaaatgtgaaacggactttatcggtagaagtgagaaattcaa 150  Q
    |||||||||| | |||||||||||||||||||||||| ||||||||||||||||| || |||||||| ||||||   || |||||| ||||||||||    
T  33279068 aaggaagaattggtacatacattcacgattcacacatcagtgttctaattgaagttaactgtgaaaccgactttgatggcagaagttagaaattcaa 33278972  T

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Target: chr6; HSP #8
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 23 - 147
Target Start/End: Complemental strand, 33280482 - 33280358
Alignment:
Q  23 gctgacaagaaatccggaagacgagttgctgaaggaagaatcgctacatacattcacgattcacacattagtgttctaattgaagtgaaatgtgaaacgg 122  Q
    |||||||||||||||||||||  |   ||||||||| |||||  ||| |||||||||||||||| |||| || ||||| ||||||| || ||||| || |    
T  33280482 gctgacaagaaatccggaagattaaaagctgaaggaggaatcagtacctacattcacgattcacgcattggttttctatttgaagttaactgtgatactg 33280383  T
Q  123 actttatcggtagaagtgagaaatt 147  Q
    ||||| | || ||||||||||||||    
T  33280382 acttttttggcagaagtgagaaatt 33280358  T

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Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 143 - 187
Target Start/End: Complemental strand, 33293078 - 33293034
Alignment:
Q  143 aaattcaaggagtttgttcatgatcttgcaatgcaagttgctgct 187  Q
    |||||||||||||| ||| ||||||||||||||||||||||||||    
T  33293078 aaattcaaggagttggttaatgatcttgcaatgcaagttgctgct 33293034  T

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Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 22 - 84
Target Start/End: Complemental strand, 33293152 - 33293090
Alignment:
Q  22 cgctgacaagaaatccggaagacgagttgctgaaggaagaatcgctacatacattcacgattc 84  Q
    |||||| ||||||||| |||||| ||  |||||||||||||| | ||||||||||||||||||    
T  33293152 cgctgataagaaatccagaagactagcagctgaaggaagaattggtacatacattcacgattc 33293090  T

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Target: chr2 (Bit Score: 87; Significance: 7e-42; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 18 - 200
Target Start/End: Original strand, 17447799 - 17447981
Alignment:
Q  18 catccgctgacaagaaatccggaagacgagttgctgaaggaagaatcgctacatacattcacgattcacacattagtgttctaattgaagtgaaatgtga 117  Q
    |||||||||| ||||||||||||||||  |  |||||||||||||||| |||||||||||||||| ||| |||  ||| |||||||||| |||| | |||    
T  17447799 catccgctgataagaaatccggaagactggcagctgaaggaagaatcggtacatacattcacgatgcacgcatcggtggtctaattgaattgaactttga 17447898  T
Q  118 aacggactttatcggtagaagtgagaaattcaaggagtttgttcatgatcttgcaatgcaagttgctgcttgtccacaggttc 200  Q
    ||| |||||| | || ||||| |||| |||||||||||| ||| ||||||||||||||||||| ||||||| |||||||||||    
T  17447899 aaccgactttgttggcagaagggagagattcaaggagttggttgatgatcttgcaatgcaagtggctgcttttccacaggttc 17447981  T

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Target: scaffold0428 (Bit Score: 73; Significance: 2e-33; HSPs: 3)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 18 - 200
Target Start/End: Complemental strand, 2499 - 2315
Alignment:
Q  18 catccgctgacaagaaatccggaagacgagttgctgaaggaagaatcgctacata-cattcacgattcacacattagtgttctaattgaagtgaaatgtg 116  Q
    |||||||||| ||||||||||| |||| ||  |  ||||||||||||| |||||| || || ||||||||||||| |||||||||||||||||||  |||    
T  2499 catccgctgataagaaatccgggagactagcagaagaaggaagaatcggtacatatcactcgcgattcacacattggtgttctaattgaagtgaacggtg 2400  T
Q  117 aaacggactttatcggtagaagtgagaaattcaaggagtttgttcatgatcttgcaatgcaagttgctgctt-gtccacaggttc 200  Q
    |||| |||||| | || |||||||||||||| |||||||| ||| | ||||||||||||||||| |||  || ||||||||||||    
T  2399 aaaccgactttgttggcagaagtgagaaatttaaggagttggttgacgatcttgcaatgcaagtagctttttggtccacaggttc 2315  T

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Target: scaffold0428; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 54 - 150
Target Start/End: Original strand, 15185 - 15281
Alignment:
Q  54 aaggaagaatcgctacatacattcacgattcacacattagtgttctaattgaagtgaaatgtgaaacggactttatcggtagaagtgagaaattcaa 150  Q
    |||||||||| | |||||||||||||||||||||||| ||||||||||||||||| || |||||||| ||||||   || |||||| ||||||||||    
T  15185 aaggaagaattggtacatacattcacgattcacacatcagtgttctaattgaagttaactgtgaaaccgactttgatggcagaagttagaaattcaa 15281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 23 - 147
Target Start/End: Original strand, 13771 - 13895
Alignment:
Q  23 gctgacaagaaatccggaagacgagttgctgaaggaagaatcgctacatacattcacgattcacacattagtgttctaattgaagtgaaatgtgaaacgg 122  Q
    |||||||||||||||||||||  |   ||||||||| |||||  ||| |||||||||||||||| |||| || ||||| ||||||| || ||||| || |    
T  13771 gctgacaagaaatccggaagattaaaagctgaaggaggaatcagtacctacattcacgattcacgcattggttttctatttgaagttaactgtgatactg 13870  T
Q  123 actttatcggtagaagtgagaaatt 147  Q
    ||||| | || ||||||||||||||    
T  13871 acttttttggcagaagtgagaaatt 13895  T

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