View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6697_low_27 (Length: 210)
Name: NF6697_low_27
Description: NF6697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6697_low_27 |
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Alignment Details
Target: chr7 (Bit Score: 128; Significance: 2e-66; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 72 - 199
Target Start/End: Complemental strand, 14646281 - 14646154
Alignment:
| Q |
72 |
ctggttgtacatggcattgttaatgtcctgggttttctttgcagttgctttcaaactagcttactagtgttgtgttgtgttgttcaaaggttgtattttg |
171 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14646281 |
ctggttgtacatggcattgttaatgtcctgggttttctttgcagttgctttcaaactagcttactagtgttgtgttgtgttgttcaaaggttgtattttg |
14646182 |
T |
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| Q |
172 |
gttcaattgttggaacaaatttgatgtc |
199 |
Q |
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| T |
14646181 |
gttcaattgttggaacaaatttgatgtc |
14646154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 72 - 199
Target Start/End: Original strand, 14796467 - 14796594
Alignment:
| Q |
72 |
ctggttgtacatggcattgttaatgtcctgggttttctttgcagttgctttcaaactagcttactagtgttgtgttgtgttgttcaaaggttgtattttg |
171 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14796467 |
ctggttgtacatggcattgttaatgtcctgggttttctttgcagttgctttcaaactagcttactagtgttgtgttgtgttgttcaaaggttgtattttg |
14796566 |
T |
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| Q |
172 |
gttcaattgttggaacaaatttgatgtc |
199 |
Q |
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| T |
14796567 |
gttcaattgttggaacaaatttgatgtc |
14796594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 72 - 199
Target Start/End: Original strand, 15243459 - 15243586
Alignment:
| Q |
72 |
ctggttgtacatggcattgttaatgtcctgggttttctttgcagttgctttcaaactagcttactagtgttgtgttgtgttgttcaaaggttgtattttg |
171 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15243459 |
ctggttgtacatggcattgttaatgtcctgggttttctttgcagttgctttcaaactagcttactagtgttgtgttgtgttgttcaaaggttgtattttg |
15243558 |
T |
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| Q |
172 |
gttcaattgttggaacaaatttgatgtc |
199 |
Q |
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| T |
15243559 |
gttcaattgttggaacaaatttgatgtc |
15243586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 70; Significance: 9e-32; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 72 - 199
Target Start/End: Complemental strand, 26270369 - 26270230
Alignment:
| Q |
72 |
ctggttgtacatggcattgttaatgtcctgggttttctttgcagttgctttcaaactagcttacta-----gtgtt-------gtgttgtgttgttcaaa |
159 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| ||||| ||||||||| | |
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| T |
26270369 |
ctggttgttcatggcattgttaatgtcctgggttttctttgcagttgctttcaaactagcttaatatctatatgttggttctagtgttttgttgttcaga |
26270270 |
T |
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| Q |
160 |
ggttgtattttggttcaattgttggaacaaatttgatgtc |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
26270269 |
agttgtattttggttcaattgttggaacaaatttgatgtc |
26270230 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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