View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6697_low_3 (Length: 562)
Name: NF6697_low_3
Description: NF6697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6697_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 1 - 540
Target Start/End: Complemental strand, 52512512 - 52511949
Alignment:
| Q |
1 |
tcctccaaggtatgtatgtatgtttatatacgagtttcaattcaatttcaattactcactcactca----tcattaacttaattaattgcattcatatag |
96 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
52512512 |
tcctccaaggtatgtatgtatgtttatatatgagtttcaattcaatttcaattactcactcactcactcatcattaacttaattaattgcattcatatag |
52512413 |
T |
|
| Q |
97 |
nnnnnnnnnnnnnnnnnnnnnnnnnttgtttcgaggcgtcaatgtcttaaatgtttgtgttcaactccatttttaattaatgcaaccaactcagcagcaa |
196 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52512412 |
gaagaagaagaagaagaagaagaagttgtttcgaggcgtcaatgtcttaaatgtttgtgttcaactccatttttaattaatgcaaccaactcagcagcaa |
52512313 |
T |
|
| Q |
197 |
ccgctcttgataagcctcctggttgcagaaattgtggtggaagtggtaacatcatttgtgagtcctcttctcttttctcctcattcttttt--------- |
287 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |
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| T |
52512312 |
ccgctcttgataagcctcctggttgcagaaattgtggtggaagtggtaacatcatttgtgagtcctcttctcttttctcttcattctttgttataataat |
52512213 |
T |
|
| Q |
288 |
--taataataatattcttcttccttattataatactact----------tttcatttaggtgatatgtgtggtggtacaggaaaatggaaagctcttaac |
375 |
Q |
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||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52512212 |
aataataataataatattcttccttattataatactacttttcatttcatttcatttaggtgatatgtgtggtggtacaggaaaatggaaagctcttaac |
52512113 |
T |
|
| Q |
376 |
aggaagcgagcacaagatgtttatgaatttactgaatgtcctaattgttatggtatcattcattcttctactttgctcatttcnnnnnnnncttagtaaa |
475 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |
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| T |
52512112 |
aggaagcgagcacaagatgtttatgaatttactgaatgtcctaattgttatggtatcattcattcttctaatttgctcatttc-tttttttcttagtaaa |
52512014 |
T |
|
| Q |
476 |
cgactaaattgacagattttccgtaggtcgaggaaagcttgtctgccctgtttgtttaggaactg |
540 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52512013 |
cgactaaattgactgattttccgtaggtcgaggaaagcttgtctgccctgtttgtttaggaactg |
52511949 |
T |
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