View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6697_low_4 (Length: 502)
Name: NF6697_low_4
Description: NF6697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6697_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 487; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 2 - 496
Target Start/End: Complemental strand, 2539844 - 2539350
Alignment:
| Q |
2 |
atggttgaagctggcattgaggtacatgctctaaatggtggagatctgaattcccccacagttgatattgcaatgtttaaggaagatacaaatcttgagc |
101 |
Q |
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| T |
2539844 |
atggttgaagctggcattgaggtacatgctctaaatggtggagatctgaattcccccacagttgatattgcaatgtttaaggaagatacaaatcttgagc |
2539745 |
T |
|
| Q |
102 |
cactttctggtatggaatttgagtctcatggggaagcttattctttctaccaagaatatgctcgatcaatgggattcaacactgcaatacaaaatagtcg |
201 |
Q |
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| T |
2539744 |
cactttctggtatggaattcgagtctcatggggaagcttattctttctaccaagaatatgctcgatcaatgggattcaacactgcaatacaaaatagtcg |
2539645 |
T |
|
| Q |
202 |
ccgttcaaaaacctcaagagaatttataaatgcaaagtttgcttgttccagatatggaacaaaacgagagtatgataaatccttcaaccgaccacgagct |
301 |
Q |
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| T |
2539644 |
ccgttcaaaaacctcaagagaatttatagatgcaaagtttgcttgttccagatatggaacaaaacgagagtatgataaatccttcaaccgaccacgagct |
2539545 |
T |
|
| Q |
302 |
cgacagaacaagcaagaatctgaaaattcaactggtcgaagatcttgctctaagaccgactgtaaagcaagcatgcatgtaaaaagaaggcaagatggga |
401 |
Q |
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| T |
2539544 |
cgacagaacaagcaagaatctgaaaattcaactggtcgaagatcttgctctaagaccgactgtaaagcaagcatgcatgtaaaaagaaggcaagatggga |
2539445 |
T |
|
| Q |
402 |
aatgggtcattcatagctttgtgaaggagcataatcacgaacttttaccagcccaggcagtaagtgaacaaacaagaagaatgtatgctgtgatg |
496 |
Q |
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| T |
2539444 |
aatgggtcattcatagctttgtgaaggagcataatcacgaacttttaccagcccaggcagtaagtgaacaaacaagaagaatgtatgctgtgatg |
2539350 |
T |
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Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 362 - 450
Target Start/End: Complemental strand, 42012741 - 42012653
Alignment:
| Q |
362 |
tgtaaagcaagcatgcatgtaaaaagaaggcaagatgggaaatgggtcattcatagctttgtgaaggagcataatcacgaacttttacc |
450 |
Q |
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||||||||||| ||||||||||| ||||| || ||||| |||||| || |||| ||||| ||| |||||||||| || |||||||| |
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| T |
42012741 |
tgtaaagcaagtatgcatgtaaagagaagacaggatggtaaatggtatgtttatagttttgttaagcagcataatcatgagcttttacc |
42012653 |
T |
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