View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6697_low_5 (Length: 484)
Name: NF6697_low_5
Description: NF6697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6697_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 406; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 14 - 468
Target Start/End: Complemental strand, 47048789 - 47048335
Alignment:
| Q |
14 |
acaacccttgttggtggtaatctggaggaactgaatatatatgatgagactatgagtgaggaaaatatgagcaaatcttttgatgtgcatgtgcatattg |
113 |
Q |
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| T |
47048789 |
acaacccttgttggtggtaatctggaggaattgaatatatatgatgagactatgagtgaggaaaatatgagcaaatcttttgatgtgcatgtgcatattg |
47048690 |
T |
|
| Q |
114 |
agacttatgttcctcctcagtttggtattcgaggaaatggtgcacatttggctgttgcgggctatggaaggaacgttgcagctgcaaaatattcagattg |
213 |
Q |
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| T |
47048689 |
agacttatgttcctcctcagtttggtattcgaggaaatggtgcacatttggctgttgcgggctatggaaggaacgttgcagctgcaaaatattcagattg |
47048590 |
T |
|
| Q |
214 |
ggtaagggcggtttattatgctacctgaacccgaattagaatacaagtattactgaactcttctatgcttttccttaaatcccatataagaaaaaacagg |
313 |
Q |
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| T |
47048589 |
ggtaaggtcagtttattatgctacctgaacccgaattagaatacaagtattactgaactcttctatgcttttccttaaatcccatataagaaaaaacagg |
47048490 |
T |
|
| Q |
314 |
atattggtgagttaaggtacaatatcagaaagtttgtannnnnnnctccattattattagcttaaagtggtttaatgagttgtcttgactttagtattgt |
413 |
Q |
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| T |
47048489 |
atattggtgagttaaggtacaatatcagaaagtttgtatttttttctccattattatttgcttaaagtggtttaatgagttgtcttgactttagtattgt |
47048390 |
T |
|
| Q |
414 |
ggcctttgacaatataaaatttcaataataatttttcctgctgcttgtagtgctg |
468 |
Q |
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| T |
47048389 |
ggcattcgacaatataaaatttcaacaataatttttcctgctgcttgtagtgctg |
47048335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 14 - 472
Target Start/End: Complemental strand, 10720912 - 10720454
Alignment:
| Q |
14 |
acaacccttgttggtggtaatctggaggaactgaatatatatgatgagactatgagtgaggaaaatatgagcaaatcttttgatgtgcatgtgcatattg |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
10720912 |
acaacccttgttggtggtaatctggaggaactgaatatatattataagactatgagtgatgaaaatatgagcaaatcttttgatgtgcatgtgcatattg |
10720813 |
T |
|
| Q |
114 |
agacttatgttcctcctcagtttggtattcgaggaaatggtgcacatttggctgttgcgggctatggaaggaacgttgcagctgcaaaatattcagattg |
213 |
Q |
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| T |
10720812 |
agacttatgtttctcctcggtttggtattcgaggaaatggtgcacatttggctgttgcgggctatggaaggaatgttgcagctgcaaaatattcagattg |
10720713 |
T |
|
| Q |
214 |
ggtaagggcggtttattatgctacctgaacccgaattagaatacaagtattactgaactcttctatgcttttccttaaatcccatataagaaaaaacagg |
313 |
Q |
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| T |
10720712 |
ggtaaggtcagtttattatgctacctgaacccgaattagaatacaagtattactgaactcttctatgcttttccttaaatcccatataagaaaaaacagg |
10720613 |
T |
|
| Q |
314 |
atattggtgagttaaggtacaatatcagaaagtttgtannnnnnnctccattattattagcttaaagtggtttaatgagttgtcttgactttagtattgt |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |
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| T |
10720612 |
atattggtgagttaaggtacaatatcagaaagtttgtatttttttctccattattatttgcttaaagtggtttaatgaattgtcttgactttagtattgt |
10720513 |
T |
|
| Q |
414 |
ggcctttgacaatataaaatttcaataataatttttcctgctgcttgtagtgctgatgt |
472 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
10720512 |
ggcctttgacaatataaaatttcaataataatttttcctgttgcttgtagtgctgatgt |
10720454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 133 - 472
Target Start/End: Original strand, 10713349 - 10713688
Alignment:
| Q |
133 |
gtttggtattcgaggaaatggtgcacatttggctgttgcgggctatggaaggaacgttgcagctgcaaaatattcagattgggtaagggcggtttattat |
232 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| | ||||||||| |
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| T |
10713349 |
gtttggtattcgaggaaatggtgcacagttggctgttgcgggctatggaaggaatgttgcagctgcaaaatattcagattgggcaaggtcagtttattat |
10713448 |
T |
|
| Q |
233 |
gctacctgaacccgaattagaatacaagtattactgaactcttctatgcttttccttaaatcccatataagaaaaaacaggatattggtgagttaaggta |
332 |
Q |
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| T |
10713449 |
gctacctgaacccgaattagaataaaagtattactgaactcttctatgcttttccttaaatcccaaataagaaaaaacaggatattggtgagttaaggta |
10713548 |
T |
|
| Q |
333 |
caatatcagaaagtttgtannnnnnnctccattattattagcttaaagtggtttaatgagttgtcttgactttagtattgtggcctttgacaatataaaa |
432 |
Q |
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|||| |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||| |
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| T |
10713549 |
caatgtcagaaagtttgtatttttttctccattattatttgcttaaagtggtttaatgagttgtcttgactttaatattgaggcctttgacactataaaa |
10713648 |
T |
|
| Q |
433 |
tttcaataataatttttcctgctgcttgtagtgctgatgt |
472 |
Q |
| |
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| T |
10713649 |
tttcaataataatttttcctgctgcttgtagtgctgatgt |
10713688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 70 - 242
Target Start/End: Complemental strand, 47019853 - 47019681
Alignment:
| Q |
70 |
tgaggaaaatatgagcaaatcttttgatgtgcatgtgcatattgagacttatgttcctcctcagtttggtattcgaggaaatggtgcacatttggctgtt |
169 |
Q |
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||||||||| ||||| |||| ||||||||| |||||||||||||||||||||||||||||||| |||||||| | |||||||||| |||| |||||||| |
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| T |
47019853 |
tgaggaaaagatgagtaaattttttgatgtacatgtgcatattgagacttatgttcctcctcaatttggtatactgggaaatggtgaacatctggctgtt |
47019754 |
T |
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| Q |
170 |
gcgggctatggaaggaacgttgcagctgcaaaatattcagattgggtaagggcggtttattatgctacctgaa |
242 |
Q |
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| T |
47019753 |
gggggctatgggaggaacgttgcagctgcaaaatattcagattgggtaaggtcagtttatcatgctatctgaa |
47019681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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