View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6697_low_8 (Length: 367)

Name: NF6697_low_8
Description: NF6697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6697_low_8
NF6697_low_8
[»] chr4 (9 HSPs)
chr4 (228-347)||(22370227-22370344)
chr4 (9-79)||(19429076-19429147)
chr4 (15-80)||(42468438-42468504)
chr4 (15-79)||(13774271-13774336)
chr4 (15-79)||(42470768-42470833)
chr4 (15-79)||(45162299-45162364)
chr4 (80-130)||(22370116-22370169)
chr4 (31-79)||(50855771-50855820)
chr4 (15-76)||(13776567-13776630)
[»] chr5 (8 HSPs)
chr5 (9-80)||(22601016-22601088)
chr5 (9-79)||(37215567-37215638)
chr5 (15-80)||(11849916-11849982)
chr5 (15-79)||(11852175-11852240)
chr5 (9-79)||(21743727-21743797)
chr5 (9-79)||(37207999-37208070)
chr5 (15-79)||(23164254-23164319)
chr5 (19-79)||(15469197-15469258)
[»] chr1 (9 HSPs)
chr1 (9-79)||(2403835-2403906)
chr1 (15-79)||(29833981-29834046)
chr1 (9-79)||(2409957-2410028)
chr1 (15-80)||(10911470-10911536)
chr1 (15-79)||(13011816-13011881)
chr1 (15-79)||(29833076-29833141)
chr1 (15-79)||(10909226-10909292)
chr1 (15-79)||(8933549-8933614)
chr1 (40-79)||(734579-734619)
[»] chr7 (14 HSPs)
chr7 (15-80)||(3935073-3935139)
chr7 (15-79)||(3932834-3932899)
chr7 (15-81)||(8731174-8731241)
chr7 (9-79)||(8733495-8733566)
chr7 (15-81)||(36464211-36464278)
chr7 (15-80)||(8414489-8414555)
chr7 (15-79)||(16496953-16497018)
chr7 (15-79)||(18395432-18395497)
chr7 (15-79)||(42678571-42678636)
chr7 (9-79)||(19789201-19789272)
chr7 (15-79)||(16535135-16535200)
chr7 (15-79)||(16630462-16630527)
chr7 (9-77)||(19786895-19786964)
chr7 (9-77)||(19093846-19093912)
[»] chr3 (2 HSPs)
chr3 (15-80)||(4533252-4533318)
chr3 (15-79)||(4530955-4531020)
[»] chr2 (10 HSPs)
chr2 (15-79)||(5164151-5164216)
chr2 (15-79)||(42275556-42275621)
chr2 (15-79)||(42277782-42277847)
chr2 (15-73)||(8995076-8995135)
chr2 (18-79)||(39816089-39816151)
chr2 (15-73)||(15730034-15730093)
chr2 (9-79)||(31486998-31487069)
chr2 (9-81)||(31489282-31489355)
chr2 (19-80)||(23860126-23860188)
chr2 (19-71)||(34576612-34576665)
[»] scaffold0098 (1 HSPs)
scaffold0098 (9-79)||(3707-3777)
[»] chr8 (5 HSPs)
chr8 (15-81)||(24519151-24519218)
chr8 (15-79)||(4877111-4877176)
chr8 (15-79)||(4879439-4879504)
chr8 (9-79)||(36379465-36379536)
chr8 (9-79)||(21268120-21268191)
[»] scaffold0599 (1 HSPs)
scaffold0599 (15-79)||(1736-1801)
[»] scaffold0050 (2 HSPs)
scaffold0050 (19-79)||(29453-29514)
scaffold0050 (19-79)||(31768-31829)
[»] scaffold0008 (1 HSPs)
scaffold0008 (15-79)||(88466-88531)
[»] chr6 (1 HSPs)
chr6 (19-77)||(20642300-20642359)
[»] scaffold1361 (1 HSPs)
scaffold1361 (15-79)||(74-140)


Alignment Details
Target: chr4 (Bit Score: 109; Significance: 9e-55; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 228 - 347
Target Start/End: Original strand, 22370227 - 22370344
Alignment:
Q  228 tccataagaaacgggcacgtataatgttatgtgctgattttcacatctcagggaccagggagagctatcagcagcaaccatcaataccatactcatgtta 327  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22370227 tccataagaaacgggcacgtataatgttatgtgctgattttcacatctcagggaccagggagagctatcagcagcaaccatcaataccatactcatgtta 22370326  T
Q  328 caatatatttttatggaaaa 347  Q
    ||  ||||||||||||||||    
T  22370327 ca--atatttttatggaaaa 22370344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 9 - 79
Target Start/End: Complemental strand, 19429147 - 19429076
Alignment:
Q  9 aatataaacttttctttaagattattagagagtttctcta-tttctctaccattccttttgtccctgagcca 79  Q
    |||||| |||||||||| ||| |||||||||||||||||| |||||||||| |||||||||||| |||||||    
T  19429147 aatatatacttttctttgagaatattagagagtttctctattttctctacctttccttttgtccgtgagcca 19429076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 80
Target Start/End: Complemental strand, 42468504 - 42468438
Alignment:
Q  15 aacttttctttaagattattagagagtttctctattt-ctctaccattccttttgtccctgagccaa 80  Q
    ||||||||||| ||| |||||||| |||||||||||| ||||||| |||||||||||||||||||||    
T  42468504 aacttttctttgagaatattagagtgtttctctattttctctacctttccttttgtccctgagccaa 42468438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 15 - 79
Target Start/End: Original strand, 13774271 - 13774336
Alignment:
Q  15 aacttttctttaagattattagagagtttctctattt-ctctaccattccttttgtccctgagcca 79  Q
    ||||||||||| ||| |||||||| |||||||||||| ||||||| ||||||||||||||||||||    
T  13774271 aacttttctttgagaatattagagtgtttctctattttctctacctttccttttgtccctgagcca 13774336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 15 - 79
Target Start/End: Complemental strand, 42470833 - 42470768
Alignment:
Q  15 aacttttctttaagattattagagagtttctctattt-ctctaccattccttttgtccctgagcca 79  Q
    ||||||||||| ||| |||||||| |||||||||||| ||||||| ||||||||||||||||||||    
T  42470833 aacttttctttgagaatattagagtgtttctctattttctctacctttccttttgtccctgagcca 42470768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 15 - 79
Target Start/End: Original strand, 45162299 - 45162364
Alignment:
Q  15 aacttttctttaagattattagagagtttctctattt-ctctaccattccttttgtccctgagcca 79  Q
    ||||||||||| ||| |||||||| |||||||||||| ||||||| ||||||||||||||||||||    
T  45162299 aacttttctttgagaatattagagtgtttctctattttctctacctttccttttgtccctgagcca 45162364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 80 - 130
Target Start/End: Original strand, 22370116 - 22370169
Alignment:
Q  80 aagaatttgatgtacgaatgtaaaatcgaaat---ataataaagtgaggttaca 130  Q
    ||||||||| ||||||||||||||||||||||   |||||||||||||||||||    
T  22370116 aagaatttgttgtacgaatgtaaaatcgaaatataataataaagtgaggttaca 22370169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 31 - 79
Target Start/End: Complemental strand, 50855820 - 50855771
Alignment:
Q  31 tattagagagtttctctattt-ctctaccattccttttgtccctgagcca 79  Q
    |||||||| |||||||||||| ||||||| ||||||||||||||||||||    
T  50855820 tattagagtgtttctctattttctctacctttccttttgtccctgagcca 50855771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 15 - 76
Target Start/End: Original strand, 13776567 - 13776630
Alignment:
Q  15 aacttttc-tttaagattattagagagtttctctattt-ctctaccattccttttgtccctgag 76  Q
    |||||||| ||| ||| |||||||| |||||||||||| ||||||| |||||||||||||||||    
T  13776567 aacttttcgtttgagaatattagagtgtttctctattttctctacctttccttttgtccctgag 13776630  T

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Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 9 - 80
Target Start/End: Original strand, 22601016 - 22601088
Alignment:
Q  9 aatataaacttttctttaagattattagagagtttctcta-tttctctaccattccttttgtccctgagccaa 80  Q
    ||||||| ||||||||| ||| |||||||||||||||||| |||||||||| | |||||||||||||||||||    
T  22601016 aatataatcttttctttgagaatattagagagtttctctattttctctaccttcccttttgtccctgagccaa 22601088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 9 - 79
Target Start/End: Original strand, 37215567 - 37215638
Alignment:
Q  9 aatataaacttttctttaagattattagagagtttctcta-tttctctaccattccttttgtccctgagcca 79  Q
    ||||||| ||||||||| ||| |||||||||||||||||| |||||||||| | ||||||||||||||||||    
T  37215567 aatataatcttttctttgagaatattagagagtttctctattttctctaccttcccttttgtccctgagcca 37215638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 80
Target Start/End: Complemental strand, 11849982 - 11849916
Alignment:
Q  15 aacttttctttaagattattagagagtttctctattt-ctctaccattccttttgtccctgagccaa 80  Q
    ||||||||||| ||| |||||||| |||||||||||| ||||||| |||||||||||||||||||||    
T  11849982 aacttttctttgagaatattagagtgtttctctattttctctacctttccttttgtccctgagccaa 11849916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 15 - 79
Target Start/End: Complemental strand, 11852240 - 11852175
Alignment:
Q  15 aacttttctttaagattattagagagtttctctattt-ctctaccattccttttgtccctgagcca 79  Q
    ||||||||||| ||| |||||||| |||||||||||| ||||||| ||||||||||||||||||||    
T  11852240 aacttttctttgagaatattagagtgtttctctattttctctacctttccttttgtccctgagcca 11852175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 9 - 79
Target Start/End: Original strand, 21743727 - 21743797
Alignment:
Q  9 aatataaacttttctttaagattattagagagtttctcta-tttctctaccattccttttgtccctgagcca 79  Q
    |||||||||||| |||| ||| |||||||||||||||||| |||||||||| ||||||||||||||| ||||    
T  21743727 aatataaacttt-ctttgagaatattagagagtttctctattttctctacctttccttttgtccctgggcca 21743797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 9 - 79
Target Start/End: Original strand, 37207999 - 37208070
Alignment:
Q  9 aatataaacttttctttaagattattagagagtttctcta-tttctctaccattccttttgtccctgagcca 79  Q
    ||||||| ||||||||  ||| |||||||||||||||||| |||||||||| | ||||||||||||||||||    
T  37207999 aatataatcttttcttcgagaatattagagagtttctctattttctctaccttcccttttgtccctgagcca 37208070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 79
Target Start/End: Complemental strand, 23164319 - 23164254
Alignment:
Q  15 aacttttctttaagattattagagagtttctcta-tttctctaccattccttttgtccctgagcca 79  Q
    ||||||||||| ||| |||||||| ||||||||| |||||||||| | ||||||||||||||||||    
T  23164319 aacttttctttgagaatattagagtgtttctctattttctctaccttcccttttgtccctgagcca 23164254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 15469197 - 15469258
Alignment:
Q  19 tttctttaagattattagagagtttctcta-tttctctaccattccttttgtccctgagcca 79  Q
    ||||||| ||| |||||||||||||||||| ||| | |||| ||||||||||||||||||||    
T  15469197 tttctttgagaatattagagagtttctctattttttttacctttccttttgtccctgagcca 15469258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 6e-16; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 9 - 79
Target Start/End: Complemental strand, 2403906 - 2403835
Alignment:
Q  9 aatataaacttttctttaagattattagagagtttctctattt-ctctaccattccttttgtccctgagcca 79  Q
    |||||||  |||||||| ||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||    
T  2403906 aatataatattttctttgagaatattagagagtttctctattttctctacctttccttttgtccctgagcca 2403835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 15 - 79
Target Start/End: Original strand, 29833981 - 29834046
Alignment:
Q  15 aacttttctttaagattattagagagtttctctattt-ctctaccattccttttgtccctgagcca 79  Q
    ||||||||||| ||| |||||||| |||||||||||| ||||||| ||||||||||||||||||||    
T  29833981 aacttttctttgagaatattagagtgtttctctattttctctacctttccttttgtccctgagcca 29834046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 9 - 79
Target Start/End: Complemental strand, 2410028 - 2409957
Alignment:
Q  9 aatataaacttttctttaagattattagagagtttctctattt-ctctaccattccttttgtccctgagcca 79  Q
    |||||||  |||||||| ||| ||||| ||||||||||||||| ||||||| ||||||||||||||||||||    
T  2410028 aatataatattttctttgagaatattatagagtttctctattttctctacctttccttttgtccctgagcca 2409957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 15 - 80
Target Start/End: Original strand, 10911470 - 10911536
Alignment:
Q  15 aacttttctttaagattattagagagtttctcta-tttctctaccattccttttgtccctgagccaa 80  Q
    ||||||||||| ||| |||||||| ||||||||| ||| |||||| |||||||||||||||||||||    
T  10911470 aacttttctttgagaatattagagtgtttctctattttatctacctttccttttgtccctgagccaa 10911536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 79
Target Start/End: Original strand, 13011816 - 13011881
Alignment:
Q  15 aacttttctttaagattattagagagtttctcta-tttctctaccattccttttgtccctgagcca 79  Q
    ||||||||||| ||| |||||||| ||||||||| |||||||||| |||||||||| |||||||||    
T  13011816 aacttttctttgagaatattagagtgtttctctattttctctacctttccttttgttcctgagcca 13011881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 79
Target Start/End: Complemental strand, 29833141 - 29833076
Alignment:
Q  15 aacttttctttaagattattagagagtttctcta-tttctctaccattccttttgtccctgagcca 79  Q
    ||||||||||| ||| |||||||| ||||||||| |||||||||| | ||||||||||||||||||    
T  29833141 aacttttctttgagaatattagagtgtttctctattttctctaccttcccttttgtccctgagcca 29833076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 79
Target Start/End: Original strand, 10909226 - 10909292
Alignment:
Q  15 aacttttc-tttaagattattagagagtttctctattt-ctctaccattccttttgtccctgagcca 79  Q
    |||||||| ||| ||| |||||||| |||||||||||| ||||||| ||||||||||||||||||||    
T  10909226 aacttttcgtttgagaatattagagtgtttctctattttctctacctttccttttgtccctgagcca 10909292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 15 - 79
Target Start/End: Complemental strand, 8933614 - 8933549
Alignment:
Q  15 aacttttctttaagattattagagagtttctctattt-ctctaccattccttttgtccctgagcca 79  Q
    ||||||||||| | | |||||||| |||||||||||| ||||||| || |||||||||||||||||    
T  8933614 aacttttctttgaaaatattagagtgtttctctattttctctaccttttcttttgtccctgagcca 8933549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 79
Target Start/End: Complemental strand, 734619 - 734579
Alignment:
Q  40 gtttctctattt-ctctaccattccttttgtccctgagcca 79  Q
    |||||||||||| ||||||| ||||||||||||||||||||    
T  734619 gtttctctattttctctacctttccttttgtccctgagcca 734579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 80
Target Start/End: Original strand, 3935073 - 3935139
Alignment:
Q  15 aacttttctttaagattattagagagtttctctattt-ctctaccattccttttgtccctgagccaa 80  Q
    ||||||||||| ||| |||||||| |||||||||||| ||||||| |||||||||||||||||||||    
T  3935073 aacttttctttgagaatattagagtgtttctctattttctctacctttccttttgtccctgagccaa 3935139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 15 - 79
Target Start/End: Original strand, 3932834 - 3932899
Alignment:
Q  15 aacttttctttaagattattagagagtttctctattt-ctctaccattccttttgtccctgagcca 79  Q
    ||||||||||| ||| |||||||| |||||||||||| ||||||| ||||||||||||||||||||    
T  3932834 aacttttctttgagaatattagagtgtttctctattttctctacctttccttttgtccctgagcca 3932899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 81
Target Start/End: Complemental strand, 8731241 - 8731174
Alignment:
Q  15 aacttttctttaagattattagagagtttctctatttc-tctaccattccttttgtccctgagccaaa 81  Q
    ||||||||||| ||| |||||||| ||||||||||||  |||||| ||||||||||||||||||||||    
T  8731241 aacttttctttgagaatattagagtgtttctctattttatctacctttccttttgtccctgagccaaa 8731174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 9 - 79
Target Start/End: Complemental strand, 8733566 - 8733495
Alignment:
Q  9 aatataaacttttctttaagattattagagagtttctcta-tttctctaccattccttttgtccctgagcca 79  Q
    ||||||| ||||||||| ||| |||||||||||||||||| |||||||||| |  |||||||||||||||||    
T  8733566 aatataatcttttctttgagaatattagagagtttctctattttctctaccttctcttttgtccctgagcca 8733495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 81
Target Start/End: Complemental strand, 36464278 - 36464211
Alignment:
Q  15 aacttttctttaagattattagagagtttctctattt-ctctaccattccttttgtccctgagccaaa 81  Q
    ||||||||||| ||| |||||||| ||||||| |||| ||||||| ||||||||||||||||||||||    
T  36464278 aacttttctttgagaatattagagtgtttctcaattttctctacctttccttttgtccctgagccaaa 36464211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 15 - 80
Target Start/End: Complemental strand, 8414555 - 8414489
Alignment:
Q  15 aacttttctttaagattattagagagtttctctattt-ctctaccattccttttgtccctgagccaa 80  Q
    ||||||||||| ||| |||||||| |||| ||||||| ||||||| |||||||||||||||||||||    
T  8414555 aacttttctttgagaatattagagtgtttttctattttctctacctttccttttgtccctgagccaa 8414489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 79
Target Start/End: Complemental strand, 16497018 - 16496953
Alignment:
Q  15 aacttttctttaagattattagagagtttctcta-tttctctaccattccttttgtccctgagcca 79  Q
    ||||||||||| ||| |||||||| ||||||||| |||||||||| | ||||||||||||||||||    
T  16497018 aacttttctttgagaatattagagtgtttctctattttctctaccttcccttttgtccctgagcca 16496953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 79
Target Start/End: Original strand, 18395432 - 18395497
Alignment:
Q  15 aacttttctttaagattattagagagtttctcta-tttctctaccattccttttgtccctgagcca 79  Q
    ||||||||||| ||| |||||||| ||||||||| |||||||||| |||||||||||||| |||||    
T  18395432 aacttttctttgagaatattagagtgtttctctattttctctacctttccttttgtccctaagcca 18395497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 79
Target Start/End: Complemental strand, 42678636 - 42678571
Alignment:
Q  15 aacttttctttaagattattagagagtttctctattt-ctctaccattccttttgtccctgagcca 79  Q
    ||||||||||| ||| |||||||| |||||| ||||| ||||||| ||||||||||||||||||||    
T  42678636 aacttttctttgagaatattagagtgtttctttattttctctacctttccttttgtccctgagcca 42678571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 9 - 79
Target Start/End: Original strand, 19789201 - 19789272
Alignment:
Q  9 aatataaacttttctttaagattattagagagtttctctattt-ctctaccattccttttgtccctgagcca 79  Q
    |||||||  ||| |||| ||| |||||||| |||||||||||| ||||||| ||||||||||||||||||||    
T  19789201 aatataacttttcctttgagaatattagagtgtttctctattttctctacctttccttttgtccctgagcca 19789272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 15 - 79
Target Start/End: Complemental strand, 16535200 - 16535135
Alignment:
Q  15 aacttttctttaagattattagagagtttctcta-tttctctaccattccttttgtccctgagcca 79  Q
    ||||||||||| ||| |||||||| ||||||||| |||||||||| | ||||||||||| ||||||    
T  16535200 aacttttctttgagaatattagagtgtttctctattttctctaccttcccttttgtccccgagcca 16535135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 15 - 79
Target Start/End: Original strand, 16630462 - 16630527
Alignment:
Q  15 aacttttctttaagattattagagagtttctcta-tttctctaccattccttttgtccctgagcca 79  Q
    ||||||||||| ||| |||||||| ||||||||| |||||||||| | ||||||||||| ||||||    
T  16630462 aacttttctttgagaatattagagtgtttctctattttctctaccttcccttttgtccccgagcca 16630527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 9 - 77
Target Start/End: Original strand, 19786895 - 19786964
Alignment:
Q  9 aatataaacttttctttaagattattagagagtttctctattt-ctctaccattccttttgtccctgagc 77  Q
    |||||||  ||| |||| ||| |||||||| |||||||||||| ||||||| ||||||||||||||||||    
T  19786895 aatataacttttcctttgagaatattagagtgtttctctattttctctacctttccttttgtccctgagc 19786964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 77
Target Start/End: Complemental strand, 19093912 - 19093846
Alignment:
Q  9 aatataaacttttctttaagattattagagagtttctctatttctctaccattccttttgtccctgagc 77  Q
    |||||||||||| |||| ||| ||||||||||||||| | ||||||||||  |||||||| ||||||||    
T  19093912 aatataaacttt-ctttgagaatattagagagtttctat-tttctctacctctccttttgaccctgagc 19093846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 80
Target Start/End: Original strand, 4533252 - 4533318
Alignment:
Q  15 aacttttctttaagattattagagagtttctctattt-ctctaccattccttttgtccctgagccaa 80  Q
    ||||||||||| ||| |||||||| |||||||||||| ||||||| |||||||||||||||||||||    
T  4533252 aacttttctttgagaatattagagtgtttctctattttctctacctttccttttgtccctgagccaa 4533318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 15 - 79
Target Start/End: Original strand, 4530955 - 4531020
Alignment:
Q  15 aacttttctttaagattattagagagtttctctattt-ctctaccattccttttgtccctgagcca 79  Q
    ||||||||||| ||| |||||||| |||||||||||| ||||||| ||||||||||||||||||||    
T  4530955 aacttttctttgagaatattagagtgtttctctattttctctacctttccttttgtccctgagcca 4531020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 15 - 79
Target Start/End: Complemental strand, 5164216 - 5164151
Alignment:
Q  15 aacttttctttaagattattagagagtttctctattt-ctctaccattccttttgtccctgagcca 79  Q
    ||||||||||| ||| |||||||| |||||||||||| ||||||| ||||||||||||||||||||    
T  5164216 aacttttctttgagaatattagagtgtttctctattttctctacctttccttttgtccctgagcca 5164151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 15 - 79
Target Start/End: Complemental strand, 42275621 - 42275556
Alignment:
Q  15 aacttttctttaagattattagagagtttctctattt-ctctaccattccttttgtccctgagcca 79  Q
    ||||||||||| ||| |||||||| |||||||||||| ||||||| ||||||||||||||||||||    
T  42275621 aacttttctttgagaatattagagtgtttctctattttctctacctttccttttgtccctgagcca 42275556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 15 - 79
Target Start/End: Complemental strand, 42277847 - 42277782
Alignment:
Q  15 aacttttctttaagattattagagagtttctctattt-ctctaccattccttttgtccctgagcca 79  Q
    ||||||||||| ||| |||||||| |||||||||||| ||||||| ||||||||||||||||||||    
T  42277847 aacttttctttgagaatattagagtgtttctctattttctctacctttccttttgtccctgagcca 42277782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 73
Target Start/End: Complemental strand, 8995135 - 8995076
Alignment:
Q  15 aacttttctttaagattattagagagtttctcta-tttctctaccattccttttgtccct 73  Q
    ||||||||||| ||| |||||||||||||||||| |||||||||| ||||||||||||||    
T  8995135 aacttttctttgagaatattagagagtttctctattttctctacctttccttttgtccct 8995076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 18 - 79
Target Start/End: Complemental strand, 39816151 - 39816089
Alignment:
Q  18 ttttctttaagattattagagagtttctcta-tttctctaccattccttttgtccctgagcca 79  Q
    |||||||| ||| |||||||||||||||||| |||||||||| |||||||||||| |||||||    
T  39816151 ttttctttgagaatattagagagtttctctattttctctacctttccttttgtccgtgagcca 39816089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 73
Target Start/End: Original strand, 15730034 - 15730093
Alignment:
Q  15 aacttttctttaagattattagagagtttctcta-tttctctaccattccttttgtccct 73  Q
    ||||||| ||| ||| |||||||||||||||||| |||||||||| ||||||||||||||    
T  15730034 aacttttatttgagaatattagagagtttctctattttctctacctttccttttgtccct 15730093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 9 - 79
Target Start/End: Original strand, 31486998 - 31487069
Alignment:
Q  9 aatataaacttttctttaagattattagagagtttctctattt-ctctaccattccttttgtccctgagcca 79  Q
    |||||||  ||| |||| ||| |||||||| |||||||||||| ||||||| ||||||||||||||||||||    
T  31486998 aatataacttttcctttgagaatattagagtgtttctctattttctctacctttccttttgtccctgagcca 31487069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 9 - 81
Target Start/End: Original strand, 31489282 - 31489355
Alignment:
Q  9 aatataaacttttctttaagattattagagagtttctctattt-ctctaccattccttttgtccctgagccaaa 81  Q
    |||||||  ||| |||| ||| |||||||| |||||||||||| ||||||| |||||||||||||| |||||||    
T  31489282 aatataacttttcctttgagaatattagagtgtttctctattttctctacctttccttttgtccctaagccaaa 31489355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 23860126 - 23860188
Alignment:
Q  19 tttctttaagattattagagagtttctcta-tttctctaccattccttttgtccctgagccaa 80  Q
    ||||||| ||| |||||||||||||||||| ||||| | |  |||||||||||||||||||||    
T  23860126 tttctttgagaatattagagagtttctctattttctatgcttttccttttgtccctgagccaa 23860188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 34576665 - 34576612
Alignment:
Q  19 tttctttaagattattagagagtttctcta-tttctctaccattccttttgtcc 71  Q
    ||||||| ||| |||||||||||||||||| |||||||||| | ||||||||||    
T  34576665 tttctttgagaatattagagagtttctctattttctctaccttaccttttgtcc 34576612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0098 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 9 - 79
Target Start/End: Complemental strand, 3777 - 3707
Alignment:
Q  9 aatataaacttttctttaagattattagagagtttctctattt-ctctaccattccttttgtccctgagcca 79  Q
    |||||||||||| |||| ||| |||||||||||| |||||||| ||||||| ||||||||||||||||||||    
T  3777 aatataaacttt-ctttgagaatattagagagttactctattttctctacctttccttttgtccctgagcca 3707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 81
Target Start/End: Complemental strand, 24519218 - 24519151
Alignment:
Q  15 aacttttctttaagattattagagagtttctctattt-ctctaccattccttttgtccctgagccaaa 81  Q
    ||||||||||  ||| |||||||| |||||||||||| ||||||| ||||||||||||||||||||||    
T  24519218 aacttttcttagagaatattagagtgtttctctattttctctacctttccttttgtccctgagccaaa 24519151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 79
Target Start/End: Original strand, 4877111 - 4877176
Alignment:
Q  15 aacttttctttaagattattagagagtttctctattt-ctctaccattccttttgtccctgagcca 79  Q
    |||||||| || ||| |||||||| |||||||||||| ||||||| ||||||||||||||||||||    
T  4877111 aacttttccttgagaatattagagtgtttctctattttctctacctttccttttgtccctgagcca 4877176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 79
Target Start/End: Original strand, 4879439 - 4879504
Alignment:
Q  15 aacttttctttaagattattagagagtttctctattt-ctctaccattccttttgtccctgagcca 79  Q
    |||||||| || ||| |||||||| |||||||||||| ||||||| ||||||||||||||||||||    
T  4879439 aacttttccttgagaatattagagtgtttctctattttctctacctttccttttgtccctgagcca 4879504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 9 - 79
Target Start/End: Complemental strand, 36379536 - 36379465
Alignment:
Q  9 aatataaacttttctttaagattattagagagtttctctattt-ctctaccattccttttgtccctgagcca 79  Q
    |||||||  ||| |||| ||| |||||||| |||||||||||| ||||||| ||||||||||||||||||||    
T  36379536 aatataacttttcctttgagaatattagagtgtttctctattttctctacctttccttttgtccctgagcca 36379465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 9 - 79
Target Start/End: Complemental strand, 21268191 - 21268120
Alignment:
Q  9 aatataaacttttctttaagattattagagagtttctctattt-ctctaccattccttttgtccctgagcca 79  Q
    |||||||  ||| |||| ||| |||||||| |||||||||||| ||||||| || |||||||||||||||||    
T  21268191 aatataacttttcctttgagaatattagagtgtttctctattttctctaccttttcttttgtccctgagcca 21268120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0599 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0599
Description:

Target: scaffold0599; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 79
Target Start/End: Original strand, 1736 - 1801
Alignment:
Q  15 aacttttctttaagattattagagagtttctctattt-ctctaccattccttttgtccctgagcca 79  Q
    ||||||||||| ||  |||||||| |||||||||||| ||||||| ||||||||||||||||||||    
T  1736 aacttttctttgaggatattagagtgtttctctattttctctacctttccttttgtccctgagcca 1801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 29453 - 29514
Alignment:
Q  19 tttctttaagattattagagagtttctctattt-ctctaccattccttttgtccctgagcca 79  Q
    ||||||| |||  |||||||||||||||||||| ||||||| ||||||||||||||||||||    
T  29453 tttctttgagaacattagagagtttctctattttctctacctttccttttgtccctgagcca 29514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 31768 - 31829
Alignment:
Q  19 tttctttaagattattagagagtttctctattt-ctctaccattccttttgtccctgagcca 79  Q
    ||||||| |||  |||||||||||||||||||| ||||||| |||||||||||| |||||||    
T  31768 tttctttgagaacattagagagtttctctattttctctacctttccttttgtccttgagcca 31829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 79
Target Start/End: Original strand, 88466 - 88531
Alignment:
Q  15 aacttttctttaagattattagagagtttctctattt-ctctaccattccttttgtccctgagcca 79  Q
    ||||||||||| ||| ||||||||  ||||||||||| ||||||| ||||||||||||||||||||    
T  88466 aacttttctttgagaatattagagtctttctctattttctctacctttccttttgtccctgagcca 88531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 20642300 - 20642359
Alignment:
Q  19 tttctttaagattattagagagtttctcta-tttctctaccattccttttgtccctgagc 77  Q
    ||||||| ||| ||||||||| |||||||| |||||||||| ||| ||||||||||||||    
T  20642300 tttctttgagaatattagagaatttctctattttctctacctttcattttgtccctgagc 20642359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1361 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold1361
Description:

Target: scaffold1361; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 79
Target Start/End: Original strand, 74 - 140
Alignment:
Q  15 aacttttc-tttaagattattagagagtttctctattt-ctctaccattccttttgtccctgagcca 79  Q
    |||||||| ||| ||| ||||| || |||||||||||| ||||||| ||||||||||||||||||||    
T  74 aacttttcgtttgagaatattaaagtgtttctctattttctctacctttccttttgtccctgagcca 140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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