View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6697_low_9 (Length: 349)
Name: NF6697_low_9
Description: NF6697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6697_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 308; Significance: 1e-173; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 13 - 336
Target Start/End: Original strand, 51106165 - 51106488
Alignment:
| Q |
13 |
gatggacatcaagaaataacagaagacgaattaaatcagaaaaacctttgcaagcagcccaatgcaatgggcttcttccatcattatcaagaacgtcagg |
112 |
Q |
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| T |
51106165 |
gatgtacatcaagaaataacagaagacgaattaaatcagaaaaacctttgcaagcagcccaatgcaatgggcttcttccatcattatcaagaacgtcagg |
51106264 |
T |
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| Q |
113 |
gtcagcattccattttgaaacaatgtggtaaaggaaagatgtttgatcatattgagcagcaacatgtattgtctgatacccatccttgtcagcagaattc |
212 |
Q |
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| T |
51106265 |
gtcagcattccattttgaaacaatgtggtaaaggaaagatgtttgatcatattgagcagcaacatgtattgtctgatacccatccttgtcagcagaattc |
51106364 |
T |
|
| Q |
213 |
aattgagcaccctctttgagtaaaaggtctgcaacctcaacagaaccccgtacagcactccaatgcaatgctgtctggccactacgatcttttgcattta |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
51106365 |
aattgagcaccctctttgagtaaaaggtctgcaacctcaacagaaccccgtacggcactccaatgcaatgctgtctagccactacgatcttttgcattta |
51106464 |
T |
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| Q |
313 |
tatctccaccatgatgaatgatgt |
336 |
Q |
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||||||||||||||| |||||||| |
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| T |
51106465 |
tatctccaccatgatcaatgatgt |
51106488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 20 - 336
Target Start/End: Original strand, 51115508 - 51115824
Alignment:
| Q |
20 |
atcaagaaataacagaagacgaattaaatcagaaaaacctttgcaagcagcccaatgcaatgggcttcttccatcattatcaagaacgtcagggtcagca |
119 |
Q |
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| T |
51115508 |
atcaagaaataacagaagacatataaaatcagcaaaacctttgtaagcagcccaatgcaaggggcttcttccttcattatcaggaacatcaggctcagcg |
51115607 |
T |
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| Q |
120 |
ttccattttgaaacaatgtggtaaaggaaagatgtttgatcatattgagcagcaacatgtattgtctgatacccatccttgtcagcagaattcaattgag |
219 |
Q |
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| T |
51115608 |
ttccattttgaaacaagatggtaaaggaaagctgtatgaccatattgagctgcaacatgtgttgtctgatacccatacttgtcagcagaattcaattcag |
51115707 |
T |
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| Q |
220 |
caccctctttgagtaaaaggtctgcaacctcaacagaaccccgtacagcactccaatgcaatgctgtctggccactacgatcttttgcatttatatctcc |
319 |
Q |
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||||||||||||||||||| ||||||||||||| | |||| || || ||||||||||||||||| || |||||| |||||||| |||| ||||||||||| |
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| T |
51115708 |
caccctctttgagtaaaagctctgcaacctcaatacaacctcgaaccgcactccaatgcaatgccgtttggccattacgatctgttgcgtttatatctcc |
51115807 |
T |
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| Q |
320 |
accatgatgaatgatgt |
336 |
Q |
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| T |
51115808 |
accatgatcgatgatgt |
51115824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 65; Significance: 2e-28; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 185 - 325
Target Start/End: Complemental strand, 48033900 - 48033760
Alignment:
| Q |
185 |
ctgatacccatccttgtcagcagaattcaattgagcaccctctttgagtaaaaggtctgcaacctcaacagaaccccgtacagcactccaatgcaatgct |
284 |
Q |
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||||||||||| | ||||||||| |||| | |||||||||||| |||||| || |||||||||| || || |||||| || |||||||||||||||||| |
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| T |
48033900 |
ctgatacccattcatgtcagcagcgttcactcgagcaccctcttggagtaatagctctgcaacctgaatagcaccccgaaccgcactccaatgcaatgct |
48033801 |
T |
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| Q |
285 |
gtctggccactacgatcttttgcatttatatctccaccatg |
325 |
Q |
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| T |
48033800 |
gtctggccagaatgatctgttgcatttacatctccaccatg |
48033760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 71 - 179
Target Start/End: Complemental strand, 48034221 - 48034113
Alignment:
| Q |
71 |
ccaatgcaatgggcttcttccatcattatcaagaacgtcagggtcagcattccattttgaaacaatgtggtaaaggaaagatgtttgatcatattgagca |
170 |
Q |
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||||||||| |||| ||||||||| |||||| || | ||||||||||||||||||||||||| || | ||||||||||| || ||| ||||||||||| |
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| T |
48034221 |
ccaatgcaaggggcatcttccatctttatcaggagcatcagggtcagcattccattttgaaataacatagtaaaggaaagccgtctgaccatattgagca |
48034122 |
T |
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| Q |
171 |
gcaacatgt |
179 |
Q |
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||||||||| |
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| T |
48034121 |
gcaacatgt |
48034113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 48035985 - 48035932
Alignment:
| Q |
19 |
catcaagaaataacagaagacgaattaaatcagaaaaacctttgcaagcagccc |
72 |
Q |
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|||||||||||||||||||||| || |||||| |||||||||| ||||||||| |
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| T |
48035985 |
catcaagaaataacagaagacgtatacaatcagcaaaacctttgtaagcagccc |
48035932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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