View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6698_high_10 (Length: 643)
Name: NF6698_high_10
Description: NF6698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6698_high_10 |
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Alignment Details
Target: chr8 (Bit Score: 515; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 515; E-Value: 0
Query Start/End: Original strand, 25 - 629
Target Start/End: Original strand, 10843700 - 10844305
Alignment:
| Q |
25 |
gtgctaagctcggtgtgccaccattttccgggctctcttcatactcggatcgatcatcgaagaggcttggtcatgacaattatctagtgttagagtctca |
124 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
10843700 |
gtgctaagctcggtgtgccaccattttccgggctctcttcatacttggatcaatcatcaaagaggcttggtcatgacaattatctagtgttagagtctca |
10843799 |
T |
|
| Q |
125 |
cacaaaatgtgatatggtctgagaaaagatttataagtgggagccatccctcacctcacaagccggttttataaggttcaatcaagaccaatccaagttc |
224 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10843800 |
aacaaaatgtgatatggtctgaaaaaagatttataagtgggagccatccctcacctcacaagccggttttataaggttcaatcaagaccaatccaagttc |
10843899 |
T |
|
| Q |
225 |
tatgatttggtatggctcgaacaagttgagctggttttgcgtgcacacatccattcattgcnnnnnnnngtttctcctaaagtttctgtttgctttctca |
324 |
Q |
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||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
10843900 |
tattatttggtatggctcgaacaagttgagctggttttgcgtacacacatccattcattgcttttttt-gtttctcctaaagtttctgtttgctttctca |
10843998 |
T |
|
| Q |
325 |
cagaaactgatcttgcagaaatttagaatcctgcttacatagcctcagaacatcaagatcagttgcttctcgcatgtctttcagcctcgctcttctctca |
424 |
Q |
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|||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10843999 |
cagaaactgatcttgcagaaatttagaatcctgcctccatagcctcagaacatcaagatcagttgcttctcgcatgtctttcagcctcgctcttctctca |
10844098 |
T |
|
| Q |
425 |
actccaagagaaaattcaccatcactgtcaatctaaggtcaaagtgctagcacgctagctatggtttaatctttgaaacacgaagaaattggcaaatgta |
524 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || |
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| T |
10844099 |
actccaagagaaaattcaccatcactgtcaatctaaggtcaaagtgctagcacgctagctatggtttaatctttgaaacacaaagaaattggcaaattta |
10844198 |
T |
|
| Q |
525 |
ttgcttcgtt--tctgagttacatcaaatccatcacagacacatattctcttctgtctattggagaaatagtctcaattcgagaacaactagatgttatt |
622 |
Q |
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|||||||||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10844199 |
ttgcttcgtttctctaagttacatcaaatccatcacagacacatattctcttatgtctattggagaaatagtctcaattcgagaacaactagatgttatt |
10844298 |
T |
|
| Q |
623 |
cttgatg |
629 |
Q |
| |
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||||||| |
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| T |
10844299 |
cttgatg |
10844305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 154 - 194
Target Start/End: Original strand, 34843127 - 34843166
Alignment:
| Q |
154 |
tttataagtgggagccatccctcacctcacaagccggtttt |
194 |
Q |
| |
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||||||||||||||| |||| |||||||||||||||||||| |
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| T |
34843127 |
tttataagtgggagcaatcc-tcacctcacaagccggtttt |
34843166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 154 - 192
Target Start/End: Original strand, 906090 - 906128
Alignment:
| Q |
154 |
tttataagtgggagccatccctcacctcacaagccggtt |
192 |
Q |
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|||||||||||||| |||||||||||| ||||||||||| |
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| T |
906090 |
tttataagtgggaggcatccctcacctaacaagccggtt |
906128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 154 - 194
Target Start/End: Original strand, 42295589 - 42295628
Alignment:
| Q |
154 |
tttataagtgggagccatccctcacctcacaagccggtttt |
194 |
Q |
| |
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||||||||||||||| |||| |||||||||||||||||||| |
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| T |
42295589 |
tttataagtgggagcaatcc-tcacctcacaagccggtttt |
42295628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000009; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 154 - 194
Target Start/End: Complemental strand, 21750116 - 21750077
Alignment:
| Q |
154 |
tttataagtgggagccatccctcacctcacaagccggtttt |
194 |
Q |
| |
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||||||||||||||| || |||||||||||||||||||||| |
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| T |
21750116 |
tttataagtgggagc-attcctcacctcacaagccggtttt |
21750077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 134 - 194
Target Start/End: Complemental strand, 22231402 - 22231343
Alignment:
| Q |
134 |
tgatatggtctgagaaaagatttataagtgggagccatccctcacctcacaagccggtttt |
194 |
Q |
| |
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||||||| ||||||| | ||||||||||||| || |||| |||||||||||||||||||| |
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| T |
22231402 |
tgatatgacctgagaatatatttataagtgggggcaatcc-tcacctcacaagccggtttt |
22231343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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