View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6698_high_11 (Length: 616)

Name: NF6698_high_11
Description: NF6698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6698_high_11
NF6698_high_11
[»] chr4 (19 HSPs)
chr4 (10-329)||(46868996-46869321)
chr4 (353-598)||(46868724-46868969)
chr4 (368-598)||(30783444-30783675)
chr4 (163-331)||(20447335-20447502)
chr4 (355-516)||(46867456-46867617)
chr4 (355-458)||(41982690-41982793)
chr4 (360-479)||(51537276-51537395)
chr4 (355-484)||(20447182-20447308)
chr4 (354-491)||(32839029-32839165)
chr4 (371-484)||(51537996-51538109)
chr4 (359-458)||(53807847-53807946)
chr4 (133-331)||(46867220-46867418)
chr4 (134-266)||(30783211-30783342)
chr4 (163-246)||(10544938-10545021)
chr4 (356-471)||(20445856-20445970)
chr4 (146-233)||(51537063-51537149)
chr4 (354-403)||(976234-976283)
chr4 (163-192)||(3428646-3428675)
chr4 (164-283)||(32838502-32838620)
[»] chr5 (17 HSPs)
chr5 (354-523)||(19831806-19831976)
chr5 (354-491)||(19827914-19828051)
chr5 (390-531)||(35891871-35892013)
chr5 (354-491)||(14062311-14062448)
chr5 (354-446)||(14575272-14575364)
chr5 (368-516)||(35891515-35891660)
chr5 (384-484)||(23136808-23136908)
chr5 (355-516)||(38226146-38226304)
chr5 (355-491)||(8588826-8588962)
chr5 (354-422)||(6037125-6037193)
chr5 (264-331)||(14575166-14575233)
chr5 (184-267)||(23136663-23136746)
chr5 (354-491)||(8590318-8590455)
chr5 (391-492)||(31910107-31910208)
chr5 (261-328)||(38225072-38225139)
chr5 (236-299)||(14062521-14062584)
chr5 (243-316)||(38231624-38231696)
[»] chr8 (6 HSPs)
chr8 (354-598)||(7000652-7000897)
chr8 (355-532)||(7000990-7001167)
chr8 (134-331)||(7001196-7001393)
chr8 (354-516)||(8085407-8085570)
chr8 (355-453)||(33136774-33136872)
chr8 (355-416)||(1745830-1745890)
[»] chr6 (9 HSPs)
chr6 (359-531)||(10457926-10458099)
chr6 (360-493)||(32056566-32056699)
chr6 (354-477)||(6421553-6421676)
chr6 (264-331)||(10458145-10458212)
chr6 (200-327)||(16118794-16118921)
chr6 (146-212)||(6367551-6367617)
chr6 (354-458)||(20995791-20995891)
chr6 (354-458)||(16118647-16118751)
chr6 (236-269)||(2558330-2558363)
[»] chr3 (13 HSPs)
chr3 (354-490)||(6761822-6761958)
chr3 (355-446)||(53114365-53114456)
chr3 (359-475)||(1724148-1724264)
chr3 (163-281)||(44866935-44867052)
chr3 (363-484)||(9829901-9830022)
chr3 (354-426)||(6454388-6454460)
chr3 (356-491)||(31313424-31313558)
chr3 (359-419)||(1722878-1722938)
chr3 (260-331)||(1542033-1542104)
chr3 (360-398)||(9827982-9828020)
chr3 (455-516)||(27647907-27647969)
chr3 (205-313)||(1538059-1538167)
chr3 (236-316)||(53114507-53114587)
[»] scaffold0426 (3 HSPs)
scaffold0426 (136-310)||(4698-4872)
scaffold0426 (358-522)||(3427-3591)
scaffold0426 (355-423)||(4572-4640)
[»] chr7 (9 HSPs)
chr7 (355-484)||(47304164-47304292)
chr7 (354-491)||(20268268-20268406)
chr7 (358-490)||(5987790-5987922)
chr7 (354-475)||(30332330-30332450)
chr7 (354-443)||(30335085-30335174)
chr7 (135-284)||(47304369-47304518)
chr7 (443-484)||(20268868-20268909)
chr7 (368-406)||(20268883-20268921)
chr7 (355-395)||(31544836-31544876)
[»] chr1 (12 HSPs)
chr1 (354-491)||(12659149-12659288)
chr1 (368-491)||(38518065-38518188)
chr1 (368-490)||(12664052-12664174)
chr1 (354-491)||(12657804-12657944)
chr1 (353-420)||(12664410-12664477)
chr1 (205-284)||(6394876-6394955)
chr1 (440-510)||(49539803-49539874)
chr1 (354-482)||(6334229-6334357)
chr1 (237-289)||(12659361-12659413)
chr1 (354-404)||(5905148-5905198)
chr1 (205-275)||(49540062-49540132)
chr1 (205-249)||(26778593-26778637)
[»] scaffold0049 (2 HSPs)
scaffold0049 (500-598)||(62815-62913)
scaffold0049 (354-405)||(63006-63057)
[»] chr2 (5 HSPs)
chr2 (355-516)||(14815290-14815450)
chr2 (389-491)||(26510973-26511075)
chr2 (359-472)||(26511693-26511806)
chr2 (163-286)||(34151645-34151768)
chr2 (204-302)||(9729738-9729836)


Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-129; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-129
Query Start/End: Original strand, 10 - 329
Target Start/End: Complemental strand, 46869321 - 46868996
Alignment:
Q  10 aatatcatatctttgttgattcacacaggttccaacacgtacaactgactagaatagagatcat------ggataccggcgatcttgaaatagagatcaa 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      ||||||||||||||||||||||||||||||    
T  46869321 aatatcatatctttgttgattcacacaggttccaacacgtacaactgactagaatagagatcatactcttggataccggcgatcttgaaatagagatcaa 46869222  T
Q  104 tgcttagaatagttattcgagtgatcagctattttggtcctcaaatttatatgcacggctcaatttcatcctttaatttttcaaaatagcaaataggtta 203  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |    
T  46869221 tgcctagaatagttattcgagtgatcagctattttggtcctcaaatttatatgcacagctcaatttcatcctttaatttttcaaaatagcaaataggtca 46869122  T
Q  204 ttgaattttgtaaatgtcaatcaatttagtttttccgtcaagtctcatcgttaacggtgttgacgtgtcacgttaagcgctgacgtaaagttccaagtca 303  Q
    ||||||||| ||||||||||||||||||||||||| ||||| ||| ||||||||| |||||||| |||||||||||||| |||  || ||||||||||||    
T  46869121 ttgaattttataaatgtcaatcaatttagtttttctgtcaaatctaatcgttaacagtgttgacatgtcacgttaagcgttgagttagagttccaagtca 46869022  T
Q  304 acttccacatgtataaggacaaattt 329  Q
    |||||||  |||| |||||| |||||    
T  46869021 acttccatgtgtacaaggacgaattt 46868996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 353 - 598
Target Start/End: Complemental strand, 46868969 - 46868724
Alignment:
Q  353 ataaatgaaagtcactacaaattgttacactgtcaaatcgatccttaaattattcattaaaaatcaagttggtcattgaaatatgtcactcactgtcaaa 452  Q
    |||||| |||||||||||||||| || |||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46868969 ataaataaaagtcactacaaattatttcactgtcaaatcgatcattgaattattcattaaaaatcaagttggtcattgaaatatgtcactcactgtcaaa 46868870  T
Q  453 tcgatcaatgaattatttatcttatctatcaaactgatctcaataatgtcaaataaatgttaaatactaaacgaatgtgaagaatccccaaggaacaagt 552  Q
    ||||||||||||||||||||||||||||||||||||||||||  | ||||||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  46868869 tcgatcaatgaattatttatcttatctatcaaactgatctcagcactgtcaaataaatcctaaatactaaacgaatgtgaagaatccccaaggaacaagt 46868770  T
Q  553 gaggaataatagttaaacattattgtttcaacacctcctaataaat 598  Q
    |||||||||| |||||||||||||||||||||||||||||||||||    
T  46868769 gaggaataattgttaaacattattgtttcaacacctcctaataaat 46868724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 368 - 598
Target Start/End: Original strand, 30783444 - 30783675
Alignment:
Q  368 tacaaattgttacactgtcaaatcgatccttaaattattcattaaaaatcaagttggtcattgaaatatgtcactcactgtcaaatcgatcaatgaatta 467  Q
    ||||||||||||| || ||||||| |||| ||||||||||  ||||||| |||||||||  |||| || |||||||| | | |||||||||  |||||||    
T  30783444 tacaaattgttactctatcaaatcaatccataaattattccataaaaattaagttggtctctgaattacgtcactcaatattaaatcgatccctgaatta 30783543  T
Q  468 tttatcttatctatcaaactgatctca--ataatgtcaaataaatgttaaatactaaacgaatgtgaagaatccccaaggaacaagtgaggaataatagt 565  Q
    ||||||  |||||||||  ||||| ||  ||| |||||||||||||||||| |||||| ||| ||||| |  ||||||||||||||| |||||||| |||    
T  30783544 tttatcaaatctatcaatttgatc-catgatactgtcaaataaatgttaaaaactaaaagaacgtgaaaatgccccaaggaacaagttaggaataacagt 30783642  T
Q  566 taaacattattgtttcaacacctcctaataaat 598  Q
    ||||||||||||||||| |||||||||||||||    
T  30783643 taaacattattgtttcagcacctcctaataaat 30783675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 163 - 331
Target Start/End: Complemental strand, 20447502 - 20447335
Alignment:
Q  163 tcaatttcatcctttaatttttcaaaatagcaaataggttattgaattttgtaaatgtcaatcaatttagtttttccgtcaagtctcatcgttaacggtg 262  Q
    |||||||||||| | ||||||||||||||||||||| ||   ||||| || |||||||||||||||||||| | | |||||||||||| ||||||| |||    
T  20447502 tcaatttcatccctcaatttttcaaaatagcaaatatgtccctgaatcttataaatgtcaatcaatttagtctcttcgtcaagtctcaccgttaaccgtg 20447403  T
Q  263 ttgacgtgtcacgttaagcgctgacgtaaagttccaagtcaacttccacatgtataaggacaaatttga 331  Q
     |||||| ||||||| || ||||||||  |||| |||||||||||||||||||||| |||| |||||||    
T  20447402 ctgacgtttcacgttcag-gctgacgtggagttgcaagtcaacttccacatgtatagggacgaatttga 20447335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 355 - 516
Target Start/End: Original strand, 46867456 - 46867617
Alignment:
Q  355 aaatgaaagtcactacaaattgttacactgtcaaatcgatccttaaattattcattaaaaatcaagttggtcattgaaatatgtcactcactgtcaaatc 454  Q
    |||||||||| | || ||||||||||||| |||||||||||||| |||||||||||||||||||||||||||  | || ||||||||||||| |||||||    
T  46867456 aaatgaaagtaattataaattgttacactatcaaatcgatccttgaattattcattaaaaatcaagttggtc-ctaaattatgtcactcactatcaaatc 46867554  T
Q  455 gatcaatgaattatttatcttatctatcaaactgat-ctcaataatgtcaaataaatgttaaa 516  Q
    |||| ||||||||||||| |||| ||||||  |||| ||  ||| | ||||||||||||||||    
T  46867555 gatctatgaattatttattttatttatcaatttgatccttgatactatcaaataaatgttaaa 46867617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 355 - 458
Target Start/End: Complemental strand, 41982793 - 41982690
Alignment:
Q  355 aaatgaaagtcactacaaattgttacactgtcaaatcgatccttaaattattcattaaaaatcaagttggtcattgaaatatgtcactcactgtcaaatc 454  Q
    |||| ||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||  |||| ||||| ||||||| ||||||     
T  41982793 aaataaaagtcattacaaattgttacactatcaaatcgatctttaaattattcattaaaaatcaagttggtccatgaattatgtaactcactatcaaatt 41982694  T
Q  455 gatc 458  Q
    ||||    
T  41982693 gatc 41982690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 360 - 479
Target Start/End: Original strand, 51537276 - 51537395
Alignment:
Q  360 aaagtcactacaaattgttacactgtcaaatcgatccttaaattattcattaaaaatcaagttggtcattgaaatatgtcactcactgtcaaatcgatca 459  Q
    ||||||| |||||||||||||||||||||||| |||| | || |||||||||||||| ||||| |||  || | ||||||||||||| ||||||||||||    
T  51537276 aaagtcattacaaattgttacactgtcaaatcaatccctgaactattcattaaaaattaagttagtccctggattatgtcactcactatcaaatcgatca 51537375  T
Q  460 atgaattatttatcttatct 479  Q
     | |||||||||||||||||    
T  51537376 cttaattatttatcttatct 51537395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 355 - 484
Target Start/End: Complemental strand, 20447308 - 20447182
Alignment:
Q  355 aaatgaaagtcactacaaattgttacactgtcaaatcgatccttaaattattcattaaaaatcaagttggtcattgaaatatgtcactcactgtcaaatc 454  Q
    |||||||||||| |||||||||| ||  |||||||| ||||||| | |||||||||||||||||||||||||  |||| || |||||||||| ||||||     
T  20447308 aaatgaaagtcaatacaaattgtaac--tgtcaaattgatccttgatttattcattaaaaatcaagttggtccatgaatta-gtcactcactatcaaatt 20447212  T
Q  455 gatcaatgaattatttatcttatctatcaa 484  Q
    ||||  ||||||||||||||||||||||||    
T  20447211 gatccctgaattatttatcttatctatcaa 20447182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 354 - 491
Target Start/End: Complemental strand, 32839165 - 32839029
Alignment:
Q  354 taaatgaaagtcactacaaattgttacactgtcaaatcgatccttaaattattcattaaaaatcaagttggtcattgaaatatgtcactcactgtcaaat 453  Q
    ||||||||||||| |||||||||||||| |||||| ||||||| | ||||||||| ||| ||||||| ||||| ||||| | |||||||| || | ||||    
T  32839165 taaatgaaagtcattacaaattgttacattgtcaagtcgatccctgaattattcactaagaatcaagatggtccttgaattttgtcactccctat-aaat 32839067  T
Q  454 cgatcaatgaattatttatcttatctatcaaactgatc 491  Q
     | ||  |||||||||||||||| |||||||| |||||    
T  32839066 tggtctctgaattatttatcttaactatcaaattgatc 32839029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 371 - 484
Target Start/End: Complemental strand, 51538109 - 51537996
Alignment:
Q  371 aaattgttacactgtcaaatcgatccttaaattattcattaaaaatcaagttggtcattgaaatatgtcactcactgtcaaatcgatcaatgaattattt 470  Q
    ||||||||||||| |  |||  |||||| |||||||||||||| ||  ||||||||  |||| ||||||||||| | ||||||||||| |||||||||||    
T  51538109 aaattgttacactttataattaatccttgaattattcattaaagattgagttggtccctgaattatgtcactcattatcaaatcgatccatgaattattt 51538010  T
Q  471 atcttatctatcaa 484  Q
    ||||||||||||||    
T  51538009 atcttatctatcaa 51537996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 359 - 458
Target Start/End: Original strand, 53807847 - 53807946
Alignment:
Q  359 gaaagtcactacaaattgttacactgtcaaatcgatccttaaattattcattaaaaatcaagttggtcattgaaatatgtcactcactgtcaaatcgatc 458  Q
    |||||||  ||||||||||||||| | ||||| |||||||||||||||||||||||| ||||||||||  | || |||||||| |||| |||||| ||||    
T  53807847 gaaagtcgttacaaattgttacaccgacaaattgatccttaaattattcattaaaaaacaagttggtccctaaattatgtcacccactatcaaatagatc 53807946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 133 - 331
Target Start/End: Original strand, 46867220 - 46867418
Alignment:
Q  133 tattttggtcctcaaatttatatgcacggctcaatttcatcctttaatttttcaaaatagcaaataggttattgaattttgtaaatgtcaatcaatttag 232  Q
    |||||||||||| |||||| ||| ||  | | ||||| |||  | |||||||| |||||||||| | ||  || |||||| |||||||||||||||||||    
T  46867220 tattttggtccttaaatttgtatacatcggttaattttatctctcaatttttcgaaatagcaaacacgtccttaaattttataaatgtcaatcaatttag 46867319  T
Q  233 tttttccgtcaagtctcatcgttaacggtgttgacgtgtcacgttaagcgctgacgtaaagttccaagtcaacttccacatgtataaggacaaatttga 331  Q
    |   | | ||||||||   |||||||  || |||  |||||||||||||||||||||  |||||||||||| ||||||| |||| | |||| |||||||    
T  46867320 tcccttcatcaagtcttgccgttaacaatgctgatatgtcacgttaagcgctgacgtggagttccaagtcagcttccacgtgtacagggacgaatttga 46867418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 134 - 266
Target Start/End: Original strand, 30783211 - 30783342
Alignment:
Q  134 attttggtcctcaaatttatatgcacggctcaatttcatcctttaatttttcaaaatagcaaataggttattgaattttgtaaatgtcaatcaatttagt 233  Q
    |||||||||||||||||| ||||||||  | |||||||||| ||| |||||  |||||| |||||  | | ||||  || ||||||||||| ||||||||    
T  30783211 attttggtcctcaaatttgtatgcacgtgttaatttcatcccttacttttttgaaatagaaaatacatca-tgaaacttataaatgtcaattaatttagt 30783309  T
Q  234 ttttccgtcaagtctcatcgttaacggtgttga 266  Q
     | |||||||| ||||   ||||||||||||||    
T  30783310 ctctccgtcaaatctcgctgttaacggtgttga 30783342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 163 - 246
Target Start/End: Complemental strand, 10545021 - 10544938
Alignment:
Q  163 tcaatttcatcctttaatttttcaaaatagcaaataggttattgaattttgtaaatgtcaatcaatttagtttttccgtcaagt 246  Q
    |||||||  ||||||||||| || ||||||| |||  ||  ||||||||| |||||||||||||||||||  ||||||||||||    
T  10545021 tcaattttgtcctttaatttgtcgaaatagctaattagtctttgaattttttaaatgtcaatcaatttagactttccgtcaagt 10544938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 356 - 471
Target Start/End: Original strand, 20445856 - 20445970
Alignment:
Q  356 aatgaaagtcactacaaattgttacactgtcaaatcgatccttaaattattcattaaaaatcaagttggtcattgaaatatgtcactcactgtcaaatcg 455  Q
    |||||||||||  |||||||||||||| ||||| || |||| | ||||||| |||||||||||||  ||||  |||| ||||||| | ||| |||||||     
T  20445856 aatgaaagtcaacacaaattgttacaccgtcaagtcaatcc-tgaattattgattaaaaatcaagcaggtccctgaattatgtcaatgactatcaaatca 20445954  T
Q  456 atcaatgaattattta 471  Q
    |||  | |||||||||    
T  20445955 atctctaaattattta 20445970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 146 - 233
Target Start/End: Original strand, 51537063 - 51537149
Alignment:
Q  146 aaatttatatgcacggctcaatttcatcctttaatttttcaaaatagcaaataggttattgaattttgtaaatgtcaatcaatttagt 233  Q
    |||||| ||||||| | |||||||||||||| ||||||  ||| |||  |||| ||| ||||||||| || |||||||||||||||||    
T  51537063 aaatttgtatgcaccgatcaatttcatccttcaattttagaaa-tagttaatacgttcttgaattttatagatgtcaatcaatttagt 51537149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 403
Target Start/End: Complemental strand, 976283 - 976234
Alignment:
Q  354 taaatgaaagtcactacaaattgttacactgtcaaatcgatccttaaatt 403  Q
    |||| |||||||| |||||||||||||||| ||||||| |||| ||||||    
T  976283 taaacgaaagtcattacaaattgttacactatcaaatctatccctaaatt 976234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 192
Target Start/End: Complemental strand, 3428675 - 3428646
Alignment:
Q  163 tcaatttcatcctttaatttttcaaaatag 192  Q
    ||||||||||||||||||||||||||||||    
T  3428675 tcaatttcatcctttaatttttcaaaatag 3428646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 283
Target Start/End: Complemental strand, 32838620 - 32838502
Alignment:
Q  164 caatttcatcctttaattttt-caaaatagcaaataggttattgaattttgtaaatgtcaatcaatttagtttttccgtcaagtctcatcgttaacggtg 262  Q
    |||||||||| || ||||||| | ||||||| |||  |||  |||||||  ||||||||||||||||||||   | |||||||||||  | ||||  |||    
T  32838620 caatttcatctttcaattttttcgaaatagctaatgcgtttctgaatttaataaatgtcaatcaatttagtcccttcgtcaagtctcgcctttaa--gtg 32838523  T
Q  263 ttgacgtgtcacgttaagcgc 283  Q
    |||| ||||||||||||||||    
T  32838522 ttgatgtgtcacgttaagcgc 32838502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 91; Significance: 9e-44; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 354 - 523
Target Start/End: Complemental strand, 19831976 - 19831806
Alignment:
Q  354 taaatgaaagtcactacaaattgttacactgtcaaatcgatccttaaattattcattaaaaatcaagttggtcattgaaatatgtcactcactgtcaaat 453  Q
    ||||||||||||| |||||||||||||| |||||||| ||||||| ||||||| ||||||||||||| |||||  |||| ||||||| ||||| ||||||    
T  19831976 taaatgaaagtcattacaaattgttacattgtcaaattgatccttgaattattaattaaaaatcaagatggtctgtgaattatgtcaatcactatcaaat 19831877  T
Q  454 cgatcaatgaattatttatcttatctatcaaactgatctc-aataatgtcaaataaatgttaaatactaaa 523  Q
    |||||| |||||||||||||||| | ||||||||||||||  ||| ||||||||||||| |||| ||||||    
T  19831876 cgatcattgaattatttatcttaacgatcaaactgatctctgatattgtcaaataaatgctaaaaactaaa 19831806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 354 - 491
Target Start/End: Original strand, 19827914 - 19828051
Alignment:
Q  354 taaatgaaagtcactacaaattgttacactgtcaaatcgatccttaaattattcattaaaaatcaagttggtcattgaaatatgtcactcactgtcaaat 453  Q
    ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||  |||| ||||||||||| | ||||||    
T  19827914 taaatgaaagtcattacaaattgttacactgtcaaatcgatccctaaattattcattaaaaatcaagatggtccatgaattatgtcactcaatatcaaat 19828013  T
Q  454 cgatcaatgaattatttatcttatctatcaaactgatc 491  Q
    ||||   | |||||||||||||  |||| |||||||||    
T  19828014 cgattcttaaattatttatcttgactataaaactgatc 19828051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 390 - 531
Target Start/End: Complemental strand, 35892013 - 35891871
Alignment:
Q  390 tcgatccttaaattattcattaaaaatcaagttggtcattgaaatatgtcactcactgtcaaatcgatcaatgaattatttatcttatctatcaaactga 489  Q
    ||||||| ||||||||||||||||||||||||||||  ||||| |||||||| |||| ||||||| ||| ||||||||||||||||||| ||||| ||||    
T  35892013 tcgatccctaaattattcattaaaaatcaagttggttcttgaattatgtcacccactatcaaatctatctatgaattatttatcttatcaatcaatctga 35891914  T
Q  490 tctc-aataatgtcaaataaatgttaaatactaaacgaatgtg 531  Q
    ||||  ||  | |||||||||| ||||| |||||| |||||||    
T  35891913 tctctgatgctatcaaataaatattaaaaactaaaagaatgtg 35891871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 354 - 491
Target Start/End: Original strand, 14062311 - 14062448
Alignment:
Q  354 taaatgaaagtcactacaaattgttacactgtcaaatcgatccttaaattattcattaaaaatcaagttggtcattgaaatatgtcactcactgtcaaat 453  Q
    |||| |||||| | ||||||| ||||||||||||||||||||| ||||||| ||||| |||||||||||||||  | || ||||||| ||| | ||||||    
T  14062311 taaacgaaagtaattacaaatcgttacactgtcaaatcgatccctaaattactcattgaaaatcaagttggtccataaattatgtcattcaatatcaaat 14062410  T
Q  454 cgatcaatgaattatttatcttatctatcaaactgatc 491  Q
    |  || |||||||||||||||||| ||||||| |||||    
T  14062411 cattctatgaattatttatcttatatatcaaattgatc 14062448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 354 - 446
Target Start/End: Original strand, 14575272 - 14575364
Alignment:
Q  354 taaatgaaagtcactacaaattgttacactgtcaaatcgatccttaaattattcattaaaaatcaagttggtcattgaaatatgtcactcact 446  Q
    |||| |||||||| |||||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||   |||| |||||||||||||    
T  14575272 taaacgaaagtcattacaaattgttacattgtcaaatcaatccctaaattattcattaaaaatcaagttggttcatgaattatgtcactcact 14575364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 368 - 516
Target Start/End: Original strand, 35891515 - 35891660
Alignment:
Q  368 tacaaattgttacactgtcaaatcgatccttaaattattcattaaaaatcaagttggtcattgaaatatgtcactcactgtcaaatcgatcaatgaatta 467  Q
    |||||||||||||||| |||||| ||||| ||||||||||||||||||    |||||||  |||| | | | ||||||| |||||| |||| ||||||||    
T  35891515 tacaaattgttacactatcaaattgatccataaattattcattaaaaa----gttggtccctgaattgtattactcactatcaaattgatccatgaatta 35891610  T
Q  468 tttatcttatctatcaaactgatc-tcaataatgtcaaataaatgttaaa 516  Q
    ||||| ||||||||||| || ||| |  ||| ||||||||||||||||||    
T  35891611 tttattttatctatcaatctaatctttgatattgtcaaataaatgttaaa 35891660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 384 - 484
Target Start/End: Original strand, 23136808 - 23136908
Alignment:
Q  384 gtcaaatcgatccttaaattattcattaaaaatcaagttggtcattgaaatatgtcactcactgtcaaatcgatcaatgaattatttatcttatctatca 483  Q
    ||||||||||||  | ||||||||||||||||||||||||||   |||| ||||||||||||| |||||| ||||  || |||||||||| |||||||||    
T  23136808 gtcaaatcgatctctgaattattcattaaaaatcaagttggttcatgaattatgtcactcactatcaaattgatccctgtattatttatcgtatctatca 23136907  T
Q  484 a 484  Q
    |    
T  23136908 a 23136908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 355 - 516
Target Start/End: Complemental strand, 38226304 - 38226146
Alignment:
Q  355 aaatgaaagtcactacaaattgttacactgtcaaatcgatccttaaattattcattaaaaatcaagttggtcattgaaatatgtcactcactgtcaaatc 454  Q
    |||||||||||  | |||||||||||||| ||||||| | || | |||||||||    ||||||| ||||||  |||| ||||||||||| | ||||| |    
T  38226304 aaatgaaagtcgttgcaaattgttacactatcaaatcaacccctgaattattca----aaatcaaattggtccatgaattatgtcactcattatcaaaac 38226209  T
Q  455 gatcaatgaattatttatcttatctatcaaactgat-ctcaataatgtcaaataaatgttaaa 516  Q
    |||||   |||||||||||||||||||||| ||||| ||  ||| | ||||||||||||||||    
T  38226208 gatcaccaaattatttatcttatctatcaatctgatccttgatactatcaaataaatgttaaa 38226146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 355 - 491
Target Start/End: Original strand, 8588826 - 8588962
Alignment:
Q  355 aaatgaaagtcactacaaattgttacactgtcaaatcgatccttaaattattcattaaaaatcaagttggtcattgaaatatgtcactcactgtcaaatc 454  Q
    ||||||| |||| || |||||||||   | |||||||||||||||||||||| | ||||||| ||| ||||| ||||| |||||||||   | |||||||    
T  8588826 aaatgaaggtcattaaaaattgttatgttttcaaatcgatccttaaattatttactaaaaattaagatggtccttgaattatgtcacttcatatcaaatc 8588925  T
Q  455 gatcaatgaattatttatcttatctatcaaactgatc 491  Q
    ||||  | ||||||| |||||| |||||||| |||||    
T  8588926 gatcccttaattattcatcttaactatcaaattgatc 8588962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 354 - 422
Target Start/End: Original strand, 6037125 - 6037193
Alignment:
Q  354 taaatgaaagtcactacaaattgttacactgtcaaatcgatccttaaattattcattaaaaatcaagtt 422  Q
    ||||||||||| | |||||||||||| ||||||||||||||   | |||||||||||||||||||||||    
T  6037125 taaatgaaagttattacaaattgttatactgtcaaatcgatttatgaattattcattaaaaatcaagtt 6037193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 264 - 331
Target Start/End: Original strand, 14575166 - 14575233
Alignment:
Q  264 tgacgtgtcacgttaagcgctgacgtaaagttccaagtcaacttccacatgtataaggacaaatttga 331  Q
    ||||||||||||||||||||||||||  |||||||||||| ||||||  |||| |||||| |||||||    
T  14575166 tgacgtgtcacgttaagcgctgacgtggagttccaagtcagcttccatgtgtaaaaggacgaatttga 14575233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 184 - 267
Target Start/End: Original strand, 23136663 - 23136746
Alignment:
Q  184 tcaaaatagcaaataggttattgaattttgtaaatgtcaatcaatttagtttttccgtcaagtctcatcgttaacggtgttgac 267  Q
    ||||||||||||||| ||   |||||||| ||||||||||| | |||||| |||||||||||||||||| ||||| ||| ||||    
T  23136663 tcaaaatagcaaatacgtctctgaattttataaatgtcaataagtttagtctttccgtcaagtctcatcattaacagtgatgac 23136746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 354 - 491
Target Start/End: Complemental strand, 8590455 - 8590318
Alignment:
Q  354 taaatgaaagtcactacaaattgttacactgtcaaatcgatccttaaattattcattaaaaatcaagttggtcattgaaatatgtcactcactgtcaaat 453  Q
    ||||||||| ||| || ||||||||| | |||||||||||||||| ||||||||  |||||| |||  ||| | ||||| |||||| ||  || ||||||    
T  8590455 taaatgaaaatcattataaattgttatattgtcaaatcgatccttgaattattccctaaaaaacaatatggcccttgaattatgtctcttcctatcaaat 8590356  T
Q  454 cgatcaatgaattatttatcttatctatcaaactgatc 491  Q
     |||  ||| ||||||||||||| |||| ||| |||||    
T  8590355 tgatatatggattatttatcttaactattaaattgatc 8590318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 391 - 492
Target Start/End: Complemental strand, 31910208 - 31910107
Alignment:
Q  391 cgatccttaaattattcattaaaaatcaagttggtcattgaaatatgtcactcactgtcaaatcgatcaatgaattatttatcttatctatcaaactgat 490  Q
    |||||| | ||||||||||||||||| ||| || || ||||| |||||| | ||||||||||| ||||  |||||| ||| |||||  ||||||||||||    
T  31910208 cgatccatgaattattcattaaaaattaagatgatctttgaactatgtctcacactgtcaaattgatccgtgaattgtttgtcttaattatcaaactgat 31910109  T
Q  491 ct 492  Q
    ||    
T  31910108 ct 31910107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 261 - 328
Target Start/End: Original strand, 38225072 - 38225139
Alignment:
Q  261 tgttgacgtgtcacgttaagcgctgacgtaaagttccaagtcaacttccacatgtataaggacaaatt 328  Q
    ||||||||||||||||||| |||||||||  | || |||||||| ||||||||||| | |||||||||    
T  38225072 tgttgacgtgtcacgttaaacgctgacgtgcaatttcaagtcaatttccacatgtacatggacaaatt 38225139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 236 - 299
Target Start/End: Complemental strand, 14062584 - 14062521
Alignment:
Q  236 ttccgtcaagtctcatcgttaacggtgttgacgtgtcacgttaagcgctgacgtaaagttccaa 299  Q
    |||||||||||||| ||||||||  |||||||||| |||||||||| |||| ||| | ||||||    
T  14062584 ttccgtcaagtctcgtcgttaacaatgttgacgtgacacgttaagcactgatgtagaattccaa 14062521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 243 - 316
Target Start/End: Original strand, 38231624 - 38231696
Alignment:
Q  243 aagtctcatcgttaacggtgttgacgtgtcacgttaagcgctgacgtaaagttccaagtcaacttccacatgta 316  Q
    ||||||| |||||||| ||||| ||||||||||||| ||| |||| |  |||| ||||||| ||||||||||||    
T  38231624 aagtctcgtcgttaacagtgttaacgtgtcacgttatgcgttgac-tggagtttcaagtcagcttccacatgta 38231696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 90; Significance: 3e-43; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 354 - 598
Target Start/End: Original strand, 7000652 - 7000897
Alignment:
Q  354 taaatgaaagtcactacaaattgttacactgtcaaatcgatccttaaattattcattaaaaatcaagttggtcattgaaatatgtcactcactgtcaaat 453  Q
    ||||| ||||||| || |||||| |||| | ||||||| |||  |||||||||| |||||||||||||||||| ||||| ||||||||| | | ||||||    
T  7000652 taaattaaagtcattataaattggtacattatcaaatcaatctctaaattattccttaaaaatcaagttggtccttgaattatgtcacttaatatcaaat 7000751  T
Q  454 cgatcaatgaattatttatcttatctatcaaactgatctc-aataatgtcaaataaatgttaaatactaaacgaatgtgaagaatccccaaggaacaagt 552  Q
    |||||  ||||||||||||| ||||||||||  |||||||  |||  |||||||||||| |||| |||||| ||| ||||||||  | |||| || ||||    
T  7000752 cgatctctgaattatttatcatatctatcaatttgatctctgataccgtcaaataaatgctaaaaactaaaagaacgtgaagaacacacaagaaagaagt 7000851  T
Q  553 gaggaataatagttaaacattattgtttcaacacctcctaataaat 598  Q
     |||||||| | ||||||||||||||||||| |||| |||||||||    
T  7000852 taggaataacaattaaacattattgtttcaataccttctaataaat 7000897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 355 - 532
Target Start/End: Complemental strand, 7001167 - 7000990
Alignment:
Q  355 aaatgaaagtcactacaaattgttacactgtcaaatcgatccttaaattattcattaaaaatcaagttggtcattgaaatatgtcactcactgtcaaatc 454  Q
    |||||||||||| ||||||||||||| ||||||||||||||   ||||||||| ||||||||||||| ||||  |||| ||||||||||| | ||||||     
T  7001167 aaatgaaagtcattacaaattgttacgctgtcaaatcgatcacgaaattattccttaaaaatcaagtgggtccatgaattatgtcactcaatttcaaatg 7001068  T
Q  455 gatcaatgaattatttatcttatctatcaaactgat-ctcaataatgtcaaataaatgttaaatactaaacgaatgtga 532  Q
    ||||  | ||||||||||  ||||||||||  |||| ||  ||| |||||||||||||||||| |||||| | ||||||    
T  7001067 gatc-ctaaattatttattatatctatcaatttgatccttgatattgtcaaataaatgttaaacactaaaagcatgtga 7000990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 134 - 331
Target Start/End: Complemental strand, 7001393 - 7001196
Alignment:
Q  134 attttggtcctcaaatttatatgcacggctcaatttcatcctttaatttttcaaaatagcaaataggttattgaattttgtaaatgtcaatcaatttagt 233  Q
    ||||||||| |||||||| ||||||    ||||||| |||| | |||||||  || ||||||||| |||  |||||||| ||||||| ||||||||||||    
T  7001393 attttggtcttcaaatttgtatgcatcagtcaatttgatccctaaattttttgaattagcaaatacgttcctgaattttataaatgttaatcaatttagt 7001294  T
Q  234 ttttccgtcaagtctcatcgttaacggtgttgacgtgtcacgttaagcgctgacgtaaagttccaagtcaacttccacatgtataaggacaaatttga 331  Q
     | | | ||||||| || ||||||  ||||| | ||||||||||||||||||| ||  |||||||||||||||||||| |||| |||||  |||||||    
T  7001293 ctcttcatcaagtcccaccgttaagagtgttaatgtgtcacgttaagcgctgatgtggagttccaagtcaacttccacgtgtacaaggatgaatttga 7001196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 354 - 516
Target Start/End: Original strand, 8085407 - 8085570
Alignment:
Q  354 taaatgaaagtcactacaaattgttacactgtcaaatcgatccttaaattattcattaaaaatcaagttggtcattgaaatatgtcactcactgtcaaat 453  Q
    |||||||||| || ||| |||| ||| | | |||||||||||  |  |||| ||||||||||||||| |||||  |||| ||||||||||||| ||||||    
T  8085407 taaatgaaagacattacgaattattatattttcaaatcgatcactggattactcattaaaaatcaagatggtccatgaattatgtcactcactatcaaat 8085506  T
Q  454 cgatcaatgaattatttatcttatctatcaaactgatctc-aataatgtcaaataaatgttaaa 516  Q
    |||||| | |||||||||||||| ||||| ||||||| ||  ||| ||||||||||||| ||||    
T  8085507 cgatcattaaattatttatcttaactatcgaactgatatctgatattgtcaaataaatgctaaa 8085570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 355 - 453
Target Start/End: Original strand, 33136774 - 33136872
Alignment:
Q  355 aaatgaaagtcactacaaattgttacactgtcaaatcgatccttaaattattcattaaaaatcaagttggtcattgaaatatgtcactcactgtcaaat 453  Q
    |||| ||||||| ||||||||||| || |||||||||||||| ||||||||||||| ||||||||| | ||| ||||| |||||||||| || ||||||    
T  33136774 aaataaaagtcattacaaattgttgcaatgtcaaatcgatccctaaattattcattgaaaatcaagatcgtccttgaattatgtcactcgctatcaaat 33136872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 416
Target Start/End: Original strand, 1745830 - 1745890
Alignment:
Q  355 aaatgaaagtcactacaaattgttacactgtcaaatcgatccttaaattattcattaaaaat 416  Q
    |||||||||||| || ||||||||| |||||||||||||| | | || ||||||||||||||    
T  1745830 aaatgaaagtcattataaattgttagactgtcaaatcgat-catgaactattcattaaaaat 1745890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 86; Significance: 8e-41; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 359 - 531
Target Start/End: Complemental strand, 10458099 - 10457926
Alignment:
Q  359 gaaagtcactacaaattgttacactgtcaaatcgatccttaaattattcattaaaaatcaagttggtcattgaaatatgtcactcactgtcaaatcgatc 458  Q
    |||||||| |||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||  |||| ||||||||||| | |||||||||||    
T  10458099 gaaagtcattacaaattgttacactgtcaaatcgatcgttgaattattcattaaaaatgaagttggtccctgaattatgtcactcattatcaaatcgatc 10458000  T
Q  459 aatgaattatttatcttatctatcaaactgatctc-aataatgtcaaataaatgttaaatactaaacgaatgtg 531  Q
      | ||||||||||||||||||| ||  |||||||  | | |||||||||||||||||| |||||| |||||||    
T  10457999 cctaaattatttatcttatctattaatatgatctctgagactgtcaaataaatgttaaaaactaaaagaatgtg 10457926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 360 - 493
Target Start/End: Complemental strand, 32056699 - 32056566
Alignment:
Q  360 aaagtcactacaaattgttacactgtcaaatcgatccttaaattattcattaaaaatcaagttggtcattgaaatatgtcactcactgtcaaatcgatca 459  Q
    ||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||| || ||  | || ||||||||||||| ||||||  |||     
T  32056699 aaagtcattacaaattgttacattgtcaaattgatccttaaattattcattaaaaatcaagatgatccctaaattatgtcactcactatcaaattaatct 32056600  T
Q  460 atgaattatttatcttatctatcaaactgatctc 493  Q
     |||||||||||||||| |||||||| |||||||    
T  32056599 ctgaattatttatcttaactatcaaattgatctc 32056566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 354 - 477
Target Start/End: Original strand, 6421553 - 6421676
Alignment:
Q  354 taaatgaaagtcactacaaattgttacactgtcaaatcgatccttaaattattcattaaaaatcaagttggtcattgaaatatgtcactcactgtcaaat 453  Q
    |||| ||||||||||||||| ||| ||| |||||||| |||||||  |||||||||| ||||||||||| ||   |||| ||||||||||||| ||||||    
T  6421553 taaacgaaagtcactacaaactgtcacattgtcaaattgatccttggattattcattcaaaatcaagttagtgtctgaattatgtcactcactatcaaat 6421652  T
Q  454 cgatcaatgaattatttatcttat 477  Q
    |||||  | |||||||||||||||    
T  6421653 cgatccctaaattatttatcttat 6421676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 264 - 331
Target Start/End: Complemental strand, 10458212 - 10458145
Alignment:
Q  264 tgacgtgtcacgttaagcgctgacgtaaagttccaagtcaacttccacatgtataaggacaaatttga 331  Q
    ||||||||||||||||||||||||||  |||| ||||||| ||||||| |||| | |||| |||||||    
T  10458212 tgacgtgtcacgttaagcgctgacgtggagtttcaagtcagcttccacgtgtacatggacgaatttga 10458145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 200 - 327
Target Start/End: Complemental strand, 16118921 - 16118794
Alignment:
Q  200 gttattgaattttgtaaatgtcaatcaatttagtttttccgtcaagtctcatcgttaacggtgttgacgtgtcacgttaagcgctgacgtaaagttccaa 299  Q
    ||||||||||||| ||| | |  ||||||||||||  || ||||| ||||| ||||||  || || | |||| | ||||||||||||||| |||||| ||    
T  16118921 gttattgaattttataacttttgatcaatttagttcatctgtcaaatctcaccgttaatagtattaatgtgttatgttaagcgctgacgtgaagttcaaa 16118822  T
Q  300 gtcaacttccacatgtataaggacaaat 327  Q
    ||||||| | || |||||| ||||||||    
T  16118821 gtcaactcctacgtgtatagggacaaat 16118794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 146 - 212
Target Start/End: Complemental strand, 6367617 - 6367551
Alignment:
Q  146 aaatttatatgcacggctcaatttcatcctttaatttttcaaaatagcaaataggttattgaatttt 212  Q
    |||||||||||||||| |||||||||||    ||||||||||||||| ||||||||  |||||||||    
T  6367617 aaatttatatgcacgggtcaatttcatctccgaatttttcaaaatagtaaataggtccttgaatttt 6367551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 354 - 458
Target Start/End: Original strand, 20995791 - 20995891
Alignment:
Q  354 taaatgaaagtcactacaaattgttacactgtcaaatcgatccttaaattattcattaaaaatcaagttggtcattgaaatatgtcactcactgtcaaat 453  Q
    ||||||||||||| ||| |||||||| | |||||||| ||||  |   ||||||||||||||||||| ||||| ||||  | ||||||||||| ||||||    
T  20995791 taaatgaaagtcattacgaattgttatagtgtcaaattgatcact---ttattcattaaaaatcaagatggtc-ttgagttttgtcactcactatcaaat 20995886  T
Q  454 cgatc 458  Q
    |||||    
T  20995887 cgatc 20995891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 354 - 458
Target Start/End: Complemental strand, 16118751 - 16118647
Alignment:
Q  354 taaatgaaagtcactacaaattgttacactgtcaaatcgatccttaaattattcattaaaaatcaagttggtcattgaaatatgtcactcactgtcaaat 453  Q
    ||||||||||||| |||||||| ||||| ||||||||  || ||  ||||||||||| ||||||||| | |||  | || ||| ||||||| | ||||||    
T  16118751 taaatgaaagtcattacaaatttttacattgtcaaattcatactcgaattattcattgaaaatcaagctagtccataaattatatcactcaatatcaaat 16118652  T
Q  454 cgatc 458  Q
    |||||    
T  16118651 cgatc 16118647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 236 - 269
Target Start/End: Original strand, 2558330 - 2558363
Alignment:
Q  236 ttccgtcaagtctcatcgttaacggtgttgacgt 269  Q
    ||||||||||||||||||||||||||| ||||||    
T  2558330 ttccgtcaagtctcatcgttaacggtgatgacgt 2558363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 69; Significance: 1e-30; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 354 - 490
Target Start/End: Complemental strand, 6761958 - 6761822
Alignment:
Q  354 taaatgaaagtcactacaaattgttacactgtcaaatcgatccttaaattattcattaaaaatcaagttggtcattgaaatatgtcactcactgtcaaat 453  Q
    ||||||||||||| |||||||||||| || ||||||| ||||| |||||||||||||||||| ||| ||||||  |||| ||||| ||||||||| ||||    
T  6761958 taaatgaaagtcattacaaattgttagacggtcaaattgatccctaaattattcattaaaaaccaaattggtccctgaattatgttactcactgttaaat 6761859  T
Q  454 cgatcaatgaattatttatcttatctatcaaactgat 490  Q
    | |||  ||||||||||||||||| |||||| |||||    
T  6761858 caatccttgaattatttatcttatttatcaatctgat 6761822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 355 - 446
Target Start/End: Complemental strand, 53114456 - 53114365
Alignment:
Q  355 aaatgaaagtcactacaaattgttacactgtcaaatcgatccttaaattattcattaaaaatcaagttggtcattgaaatatgtcactcact 446  Q
    |||||||||||| |||||||||||| |||||  | | ||||| ||||||||||||||||||||||| |||||  |||| |||||||||||||    
T  53114456 aaatgaaagtcattacaaattgttatactgtggatttgatccctaaattattcattaaaaatcaagctggtccatgaattatgtcactcact 53114365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 359 - 475
Target Start/End: Complemental strand, 1724264 - 1724148
Alignment:
Q  359 gaaagtcactacaaattgttacactgtcaaatcgatccttaaattattcattaaaaatcaagttggtcattgaaatatgtcactcactgtcaaatcgatc 458  Q
    |||||| | |||||||||||||||| |||||||||| | |  |||||| |||||||||||||||||||   ||| |||||||||| || | ||| |||||    
T  1724264 gaaagttattacaaattgttacactatcaaatcgatacctggattatttattaaaaatcaagttggtctcagaactatgtcactcgctattaaaccgatc 1724165  T
Q  459 aatgaattatttatctt 475  Q
      |||||||||||||||    
T  1724164 cttgaattatttatctt 1724148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 163 - 281
Target Start/End: Complemental strand, 44867052 - 44866935
Alignment:
Q  163 tcaatttcatcctttaatttttcaaaatagcaaataggttattgaattttgtaaatgtcaatcaatttagtttttccgtcaagtctcatcgttaacggtg 262  Q
    ||||||||||| || |||||||||||||||  |||| ||   |||||||| ||||  | ||||||| ||||   |||||||||||||||| |||||||||    
T  44867052 tcaatttcatctttcaatttttcaaaatagtcaatatgtccctgaattttataaagct-aatcaatctagtccctccgtcaagtctcatccttaacggtg 44866954  T
Q  263 ttgacgtgtcacgttaagc 281  Q
    ||||||||||| |||||||    
T  44866953 ttgacgtgtcatgttaagc 44866935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 363 - 484
Target Start/End: Complemental strand, 9830022 - 9829901
Alignment:
Q  363 gtcactacaaattgttacactgtcaaatcgatccttaaattattcattaaaaatcaagttggtcattgaaatatgtcactcactgtcaaatcgatcaatg 462  Q
    ||||||||||||| ||| ||| |||||||||| ||| ||||||||||||||||||| | |||||  | || |||| |||||  | ||||||| |||  ||    
T  9830022 gtcactacaaattattatactatcaaatcgatacttgaattattcattaaaaatcaggctggtctgtaaattatgacactctttatcaaatcaatccttg 9829923  T
Q  463 aattatttatcttatctatcaa 484  Q
    ||||||||| ||||| ||||||    
T  9829922 aattatttaacttatttatcaa 9829901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 354 - 426
Target Start/End: Original strand, 6454388 - 6454460
Alignment:
Q  354 taaatgaaagtcactacaaattgttacactgtcaaatcgatccttaaattattcattaaaaatcaagttggtc 426  Q
    ||||||||||||| |||||||||||| || ||||||| ||||  |||||||||||||||||| ||| ||||||    
T  6454388 taaatgaaagtcattacaaattgttagacggtcaaattgatcactaaattattcattaaaaaccaaattggtc 6454460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 356 - 491
Target Start/End: Complemental strand, 31313558 - 31313424
Alignment:
Q  356 aatgaaagtcactacaaattgttacactgtcaaatcgatccttaaattattcattaaaaatcaagttggtcattgaaatatgtcactcactgtcaaatcg 455  Q
    ||||||| ||| || |||||||| || ||||| || ||||||| ||||||||||||||||| ||| || |   | || ||| ||||||||  ||||||||    
T  31313558 aatgaaattcattaaaaattgttgcattgtcacatggatccttgaattattcattaaaaataaagatgatacctaaattatttcactcaccatcaaatcg 31313459  T
Q  456 atcaatgaattatttatcttatctatcaaactgatc 491  Q
    ||| || ||||||||||||||  ||||||| |||||    
T  31313458 atc-attaattatttatcttaaatatcaaattgatc 31313424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 359 - 419
Target Start/End: Original strand, 1722878 - 1722938
Alignment:
Q  359 gaaagtcactacaaattgttacactgtcaaatcgatccttaaattattcattaaaaatcaa 419  Q
    |||| ||| |||||||||||||||||||||||  |||| |||| ||||||||||| |||||    
T  1722878 gaaaatcattacaaattgttacactgtcaaattcatccctaaactattcattaaacatcaa 1722938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 260 - 331
Target Start/End: Original strand, 1542033 - 1542104
Alignment:
Q  260 gtgttgacgtgtcacgttaagcgctgacgtaaagttccaagtcaacttccacatgtataaggacaaatttga 331  Q
    ||||||||||||||| |||||  ||||  | | ||||||||||| ||||||| |||||||||| ||||||||    
T  1542033 gtgttgacgtgtcacattaagtcctgatatgatgttccaagtcagcttccacgtgtataaggaaaaatttga 1542104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 360 - 398
Target Start/End: Original strand, 9827982 - 9828020
Alignment:
Q  360 aaagtcactacaaattgttacactgtcaaatcgatcctt 398  Q
    ||||||| ||||||||| |||||||||||||||||||||    
T  9827982 aaagtcattacaaattgatacactgtcaaatcgatcctt 9828020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 455 - 516
Target Start/End: Complemental strand, 27647969 - 27647907
Alignment:
Q  455 gatcaatgaattatttatcttatctatcaaactgat-ctcaataatgtcaaataaatgttaaa 516  Q
    |||| ||||||||||||||||| |||||||| |||| || |||| ||||||||||||| ||||    
T  27647969 gatccatgaattatttatcttaactatcaaattgatacttaatattgtcaaataaatgctaaa 27647907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 205 - 313
Target Start/End: Complemental strand, 1538167 - 1538059
Alignment:
Q  205 tgaattttgtaaatgtcaatcaatttagtttttccgtcaagtctcatcgttaacggtgttgacgtgtcacgttaagcgctgacgtaaagttccaagtcaa 304  Q
    |||||||| | ||| |||||||||||| ||  |||||||| | ||   ||||||  |||||||||||||  |||  || |||||| |||||||||||||     
T  1538167 tgaattttatgaatatcaatcaatttaattcatccgtcaaatgtctctgttaacaatgttgacgtgtcagattagacgttgacgtgaagttccaagtcag 1538068  T
Q  305 cttccacat 313  Q
    |||||||||    
T  1538067 cttccacat 1538059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 236 - 316
Target Start/End: Complemental strand, 53114587 - 53114507
Alignment:
Q  236 ttccgtcaagtctcatcgttaacggtgttgacgtgtcacgttaagcgctgacgtaaagttccaagtcaacttccacatgta 316  Q
    ||||||||||||  ||| ||||| ||||||| ||||||| ||||||| ||||||  |||| ||||||| ||| ||| ||||    
T  53114587 ttccgtcaagtccaatctttaacagtgttgatgtgtcacattaagcgttgacgtggagtttcaagtcagcttacacgtgta 53114507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0426 (Bit Score: 67; Significance: 2e-29; HSPs: 3)
Name: scaffold0426
Description:

Target: scaffold0426; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 136 - 310
Target Start/End: Complemental strand, 4872 - 4698
Alignment:
Q  136 tttggtcctcaaatttatatgcacggctcaatttcatcctttaatttttcaaaatagcaaataggttattgaattttgtaaatgtcaatcaatttagttt 235  Q
    |||||||||||||||| ||||  |   |||||||||||| | |||||||| ||||||| |||| || |||| ||||| |||||||| |||||||||||||    
T  4872 tttggtcctcaaatttgtatgtgcacgtcaatttcatccctcaatttttcgaaatagccaatacgtcattggattttataaatgtccatcaatttagttt 4773  T
Q  236 ttccgtcaagtctcatcgttaacggtgttgacgtgtcacgttaagcgctgacgtaaagttccaagtcaacttcca 310  Q
     || |||||||||| ||||||||  || | ||||||||| ||||||||| ||||  |||||||||||| ||||||    
T  4772 gtctgtcaagtctcgtcgttaacaatgctaacgtgtcacattaagcgctaacgttgagttccaagtcagcttcca 4698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0426; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 358 - 522
Target Start/End: Original strand, 3427 - 3591
Alignment:
Q  358 tgaaagtcactacaaattgttacactgtcaaatcgatccttaaattattcattaaaaatcaagttggtcattgaaatatgtcactcactgtcaaatcgat 457  Q
    ||||||||| |||||||||||||| |||||||| ||||  | ||||||||||||||||| ||||||||  || || ||||||| ||||   |||||||||    
T  3427 tgaaagtcaatacaaattgttacattgtcaaattgatctctgaattattcattaaaaataaagttggttcttaaattatgtcattcaccaccaaatcgat 3526  T
Q  458 caatgaattatttatcttatctatcaaactgatc-tcaataatgtcaaataaatgttaaatactaa 522  Q
    |  | |||||||| | |||| ||||||  ||||| |  ||| ||||||||||||| |||| |||||    
T  3527 ccctaaattattt-ttttatatatcaatttgatcattgatactgtcaaataaatggtaaaaactaa 3591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0426; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 355 - 423
Target Start/End: Complemental strand, 4640 - 4572
Alignment:
Q  355 aaatgaaagtcactacaaattgttacactgtcaaatcgatccttaaattattcattaaaaatcaagttg 423  Q
    |||||||||| |  |||||||||||||||||| ||| ||||| | |  |||||||||||||| ||||||    
T  4640 aaatgaaagttaacacaaattgttacactgtcgaattgatccctgagctattcattaaaaattaagttg 4572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 7e-29; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 355 - 484
Target Start/End: Complemental strand, 47304292 - 47304164
Alignment:
Q  355 aaatgaaagtcactacaaattgttacactgtcaaatcgatccttaaattattcattaaaaatcaagttggtcattgaaatatgtcactcactgtcaaatc 454  Q
    |||||||||||| || |||||| |||| ||||||||||||||   ||||||||||||||||||||||||||| ||||| |||| |||||||| |||||||    
T  47304292 aaatgaaagtcaata-aaattggtacattgtcaaatcgatcccataattattcattaaaaatcaagttggtccttgaattatgccactcactttcaaatc 47304194  T
Q  455 gatcaatgaattatttatcttatctatcaa 484  Q
    ||||  ||||| ||||||||||| ||||||    
T  47304193 gatccttgaatcatttatcttatatatcaa 47304164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 354 - 491
Target Start/End: Original strand, 20268268 - 20268406
Alignment:
Q  354 taaatgaaagtcactacaaattgttacactgtcaaatcgatccttaaattattcattaaaaatcaagttggtcattgaaatatgtcactcactgtcaaat 453  Q
    |||| |||||||| |||||||||||||||| |||||| ||   | | ||||||  ||||||||||||||||| | |||| ||||||||||||| | ||||    
T  20268268 taaacgaaagtcattacaaattgttacactttcaaattgacattcagattattggttaaaaatcaagttggttaatgaattatgtcactcactattaaat 20268367  T
Q  454 cgatcaatgaattatttatc-ttatctatcaaactgatc 491  Q
    ||||| || ||||||||||| ||||||||||| ||||||    
T  20268368 cgatccataaattatttatctttatctatcaatctgatc 20268406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 358 - 490
Target Start/End: Complemental strand, 5987922 - 5987790
Alignment:
Q  358 tgaaagtcactacaaattgttacactgtcaaatcgatccttaaattattcattaaaaatcaagttggtcattgaaatatgtcactcactgtcaaatcgat 457  Q
    |||| |||| |||||||||||||| |||||||| ||||||||||||||| ||||||||||||| ||| |  |||| ||||| | |  || ||||| ||||    
T  5987922 tgaatgtcattacaaattgttacattgtcaaatagatccttaaattattaattaaaaatcaagatggaccctgaattatgttagtttctatcaaaccgat 5987823  T
Q  458 caatgaattatttatcttatctatcaaactgat 490  Q
    |  | ||||| || ||||| |||||||||||||    
T  5987822 ctttcaattaattttcttaactatcaaactgat 5987790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 354 - 475
Target Start/End: Original strand, 30332330 - 30332450
Alignment:
Q  354 taaatgaaagtcactacaaattgttacactgtcaaatcgatccttaaattattcattaaaaatcaagttggtcattgaaatatgtcactcactgtcaaat 453  Q
    ||||||||||||| | |||||||||||| ||||||||| || | ||| ||||||||||||||||||| ||||   |||| ||||||| ||| |||||||     
T  30332330 taaatgaaagtcattgcaaattgttacattgtcaaatcaattcctaatttattcattaaaaatcaagatggttcctgaattatgtcattca-tgtcaaaa 30332428  T
Q  454 cgatcaatgaattatttatctt 475  Q
     ||||  | |||||||||||||    
T  30332429 tgatctttaaattatttatctt 30332450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 354 - 443
Target Start/End: Complemental strand, 30335174 - 30335085
Alignment:
Q  354 taaatgaaagtcactacaaattgttacactgtcaaatcgatccttaaattattcattaaaaatcaagttggtcattgaaatatgtcactc 443  Q
    ||||| ||||||| ||||| ||||| || |||||||||||||| | ||||||||||||||||||||| |||||  || | ||||||||||    
T  30335174 taaattaaagtcattacaatttgttgcattgtcaaatcgatccctgaattattcattaaaaatcaagatggtctctggattatgtcactc 30335085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 135 - 284
Target Start/End: Complemental strand, 47304518 - 47304369
Alignment:
Q  135 ttttggtcctcaaatttatatgcacggctcaatttcatcctttaatttttcaaaatagcaaataggttattgaattttgtaaatgtcaatcaatttagtt 234  Q
    |||||||||||||||||  |||||  | | |||||||||| | |||||||| ||||||| |||| ||  |||||  || ||||| ||||||| ||||||     
T  47304518 ttttggtcctcaaatttgcatgcatcggttaatttcatccctcaatttttcgaaatagccaatacgtctttgaaacttataaatatcaatcattttagtc 47304419  T
Q  235 tttccgtcaagtctcatcgttaacggtgttgacgtgtcacgttaagcgct 284  Q
      ||| ||||||||| |||||||| ||| |||  ||||| ||||||||||    
T  47304418 cctccatcaagtctcgtcgttaacagtgctgaaatgtcatgttaagcgct 47304369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 443 - 484
Target Start/End: Complemental strand, 20268909 - 20268868
Alignment:
Q  443 cactgtcaaatcgatcaatgaattatttatcttatctatcaa 484  Q
    ||||||||||||||||  ||||||||||||||||||||||||    
T  20268909 cactgtcaaatcgatccttgaattatttatcttatctatcaa 20268868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 368 - 406
Target Start/End: Complemental strand, 20268921 - 20268883
Alignment:
Q  368 tacaaattgttacactgtcaaatcgatccttaaattatt 406  Q
    |||||||||| |||||||||||||||||||| |||||||    
T  20268921 tacaaattgtcacactgtcaaatcgatccttgaattatt 20268883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 355 - 395
Target Start/End: Original strand, 31544836 - 31544876
Alignment:
Q  355 aaatgaaagtcactacaaattgttacactgtcaaatcgatc 395  Q
    ||||||||| || ||||||||||||||||||||||| ||||    
T  31544836 aaatgaaagacattacaaattgttacactgtcaaattgatc 31544876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 7e-26; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 354 - 491
Target Start/End: Complemental strand, 12659288 - 12659149
Alignment:
Q  354 taaatgaaagtcactacaaattgttacactgtcaaatcgatccttaaa--ttattcattaaaaatcaagttggtcattgaaatatgtcactcactgtcaa 451  Q
    ||||||||||||| |||||||||||||| |||||||| ||||  ||||  ||||||| ||||||||||| ||||| ||||| |||||| ||| || ||||    
T  12659288 taaatgaaagtcattacaaattgttacattgtcaaattgatcaataaaaattattcactaaaaatcaagatggtccttgaattatgtctctccctatcaa 12659189  T
Q  452 atcgatcaatgaattatttatcttatctatcaaactgatc 491  Q
    ||| |||  |||||||||||||||| |||||||| |||||    
T  12659188 atcaatctctgaattatttatcttaactatcaaattgatc 12659149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 368 - 491
Target Start/End: Complemental strand, 38518188 - 38518065
Alignment:
Q  368 tacaaattgttacactgtcaaatcgatccttaaattattcattaaaaatcaagttggtcattgaaatatgtcactcactgtcaaatcgatcaatgaatta 467  Q
    |||||||||||||| |||||||| ||||| |||||||||||||||||   ||| ||||| ||||| |||||  | |||||||||||||||| |||||||     
T  38518188 tacaaattgttacattgtcaaattgatccctaaattattcattaaaacgtaagatggtccttgaattatgtatcacactgtcaaatcgatctatgaattg 38518089  T
Q  468 tttatcttatctatcaaactgatc 491  Q
    ||||||||| || ||||| |||||    
T  38518088 tttatcttaactgtcaaattgatc 38518065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 368 - 490
Target Start/End: Original strand, 12664052 - 12664174
Alignment:
Q  368 tacaaattgttacactgtcaaatcgatccttaaattattcattaaaaatcaagttggtcattgaaatatgtcactcactgtcaaatcgatcaatgaatta 467  Q
    |||| ||||||| | | ||||||| |||||| ||||||||||||||||| ||  ||||| ||||| |||||||| |||| | |||| |||| ||||||||    
T  12664052 tacatattgttatattatcaaatcaatccttgaattattcattaaaaattaaaatggtccttgaattatgtcacacactattaaattgatccatgaatta 12664151  T
Q  468 tttatcttatctatcaaactgat 490  Q
    ||||||||| |||||||| ||||    
T  12664152 tttatcttaactatcaaattgat 12664174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 354 - 491
Target Start/End: Original strand, 12657804 - 12657944
Alignment:
Q  354 taaatgaaagtcactacaaattgttacactgtcaaatcgatccttaaattattcattaaaaatcaagttggtcattgaa----atatgtcactcactgtc 449  Q
    ||||||||||| | |||||||| ||| | ||||||||| |||| |  |||||||||||||| ||||| | ||| |||||    |||||||||||||| ||    
T  12657804 taaatgaaagtaattacaaattattatattgtcaaatcaatccctggattattcattaaaa-tcaagattgtccttgaattatatatgtcactcactatc 12657902  T
Q  450 aaatcgatcaatgaattatttatcttatctatcaaactgatc 491  Q
    |||||||||  |||||||||||||||| |||||||| |||||    
T  12657903 aaatcgatccctgaattatttatcttaactatcaaattgatc 12657944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 353 - 420
Target Start/End: Complemental strand, 12664477 - 12664410
Alignment:
Q  353 ataaatgaaagtcactacaaattgttacactgtcaaatcgatccttaaattattcattaaaaatcaag 420  Q
    |||||||||| ||| |||||||| ||||| ||||| |||||||||| |||||||||||||||||||||    
T  12664477 ataaatgaaattcattacaaattattacattgtcacatcgatccttgaattattcattaaaaatcaag 12664410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 205 - 284
Target Start/End: Original strand, 6394876 - 6394955
Alignment:
Q  205 tgaattttgtaaatgtcaatcaatttagtttttccgtcaagtctcatcgttaacggtgttgacgtgtcacgttaagcgct 284  Q
    |||||||| ||||||||||||||||||||  |||| ||||||||| ||||||||  ||||||||| || |||||| ||||    
T  6394876 tgaattttataaatgtcaatcaatttagtccttccatcaagtctcgtcgttaacaatgttgacgtatcccgttaaacgct 6394955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 440 - 510
Target Start/End: Complemental strand, 49539874 - 49539803
Alignment:
Q  440 actcactgtcaaatcgatcaatgaattatttatcttatctatcaaactgatctc-aataatgtcaaataaat 510  Q
    ||||| |||||||||| ||  |||||||||||| |||||||||||||||||||| |||| | ||||||||||    
T  49539874 actcattgtcaaatcgctccttgaattatttatattatctatcaaactgatctctaatactatcaaataaat 49539803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 354 - 482
Target Start/End: Complemental strand, 6334357 - 6334229
Alignment:
Q  354 taaatgaaagtcactacaaattgttacactgtcaaatcgatccttaaattattcattaaaaatcaagttggtcattgaaatatgtcactcactgtcaaat 453  Q
    ||||| ||||||  |||||||||||||  | |||||||||||  ||||||||  |||||  || ||| || || ||||| ||||||||||||| | ||||    
T  6334357 taaataaaagtcgttacaaattgttacgttatcaaatcgatctctaaattatctattaatgattaagatgatccttgaattatgtcactcactattaaat 6334258  T
Q  454 cgatcaatgaattatttatcttatctatc 482  Q
    | |||| | |||||||||| ||| |||||    
T  6334257 caatcacttaattatttattttaactatc 6334229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 237 - 289
Target Start/End: Complemental strand, 12659413 - 12659361
Alignment:
Q  237 tccgtcaagtctcatcgttaacggtgttgacgtgtcacgttaagcgctgacgt 289  Q
    |||||||||||||| |||||| |||| |||||||| |||||||| ||||||||    
T  12659413 tccgtcaagtctcaccgttaatggtgatgacgtgtgacgttaagtgctgacgt 12659361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 354 - 404
Target Start/End: Complemental strand, 5905198 - 5905148
Alignment:
Q  354 taaatgaaagtcactacaaattgttacactgtcaaatcgatccttaaatta 404  Q
    ||||||||||||| || ||||| ||||| |||||||| |||||||||||||    
T  5905198 taaatgaaagtcattaaaaattattacattgtcaaattgatccttaaatta 5905148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 205 - 275
Target Start/End: Complemental strand, 49540132 - 49540062
Alignment:
Q  205 tgaattttgtaaatgtcaatcaatttagtttttccgtcaagtctcatcgttaacggtgttgacgtgtcacg 275  Q
    |||||||| ||||||||||||||||||||  |||  |||||||||  ||||||| ||| ||| ||||||||    
T  49540132 tgaattttataaatgtcaatcaatttagtcattctatcaagtctcgccgttaacagtgctgatgtgtcacg 49540062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 205 - 249
Target Start/End: Original strand, 26778593 - 26778637
Alignment:
Q  205 tgaattttgtaaatgtcaatcaatttagtttttccgtcaagtctc 249  Q
    |||||||| |||| ||||||||||||||| | |||||||||||||    
T  26778593 tgaattttataaacgtcaatcaatttagtctctccgtcaagtctc 26778637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 55; Significance: 3e-22; HSPs: 2)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 500 - 598
Target Start/End: Complemental strand, 62913 - 62815
Alignment:
Q  500 gtcaaataaatgttaaatactaaacgaatgtgaagaatccccaaggaacaagtgaggaataatagttaaacattattgtttcaacacctcctaataaat 598  Q
    ||||||||||||||||| |||||| |||||| |||||||||| || ||||||| | |||||| ||||||||||||||||||||| ||||| | ||||||    
T  62913 gtcaaataaatgttaaaaactaaaagaatgtaaagaatccccgagaaacaagttaagaataacagttaaacattattgtttcaatacctcatgataaat 62815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 354 - 405
Target Start/End: Complemental strand, 63057 - 63006
Alignment:
Q  354 taaatgaaagtcactacaaattgttacactgtcaaatcgatccttaaattat 405  Q
    ||||||||||||| ||||||||||||||||||||||| ||||| || |||||    
T  63057 taaatgaaagtcattacaaattgttacactgtcaaattgatccctatattat 63006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 4e-18; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 355 - 516
Target Start/End: Original strand, 14815290 - 14815450
Alignment:
Q  355 aaatgaaagtcactacaaattgttacactgtcaaatcgatccttaaattattcattaaaaatcaagttggtcattgaaatatgtcactcactgtcaaatc 454  Q
    ||||||||||   |||||||||||| | |||||||| ||||  | |||||||||| |||||||||| |||||  |||  ||||||||||||| |||||||    
T  14815290 aaatgaaagttgttacaaattgttatattgtcaaattgatctatgaattattcatgaaaaatcaagatggtc--tgagttatgtcactcactatcaaatc 14815387  T
Q  455 gatcaatgaattatttatcttatctatcaaactgat-ctcaataatgtcaaataaatgttaaa 516  Q
    || || | ||| |||||||| | |||||||||| || ||  ||||||||||||||||| ||||    
T  14815388 gaccattcaataatttatctcaactatcaaactaatccttgataatgtcaaataaatgctaaa 14815450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 389 - 491
Target Start/End: Original strand, 26510973 - 26511075
Alignment:
Q  389 atcgatccttaaattattcattaaaaatcaagttggtcattgaaatatgtcactcactgtcaaatcgatcaatgaattatttatcttatctatcaaactg 488  Q
    |||||||| | ||||||||||||||||||||| |||||  |||| ||||| | ||||| |||||||||||  | ||||||||||||||  ||| ||||||    
T  26510973 atcgatccctgaattattcattaaaaatcaagatggtccatgaattatgttattcactatcaaatcgatccctaaattatttatcttaattattaaactg 26511072  T
Q  489 atc 491  Q
    |||    
T  26511073 atc 26511075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 359 - 472
Target Start/End: Complemental strand, 26511806 - 26511693
Alignment:
Q  359 gaaagtcactacaaattgttacactgtcaaatcgatccttaaattattcattaaaaatcaagttggtcattgaaatatgtcactcactgtcaaatcgatc 458  Q
    |||||||| ||||||| | |||| |||||||| ||||    ||||||||||||||||| ||| |||||  |||| |||||||| |||  ||||||| |||    
T  26511806 gaaagtcattacaaatcgctacattgtcaaattgatctccgaattattcattaaaaattaagatggtctctgaattatgtcacccaccatcaaatcaatc 26511707  T
Q  459 aatgaattatttat 472  Q
      ||||||||||||    
T  26511706 tctgaattatttat 26511693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 163 - 286
Target Start/End: Complemental strand, 34151768 - 34151645
Alignment:
Q  163 tcaatttcatcctttaatttttcaaaatagcaaataggttattgaattttgtaaatgtcaatcaatttagtttttccgtcaagtctcatcgttaacggtg 262  Q
    |||||||||||| | || |||||||||| |  |||| ||| ||||||||  | ||| |||||||||||||||  ||| ||||||   ||||||||| |||    
T  34151768 tcaatttcatccctaaacttttcaaaatggacaatatgttcttgaatttgatgaatttcaatcaatttagttcctccatcaagttggatcgttaacagtg 34151669  T
Q  263 ttgacgtgtcacgttaagcgctga 286  Q
     | |||| | ||||||||||||||    
T  34151668 ataacgtataacgttaagcgctga 34151645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 204 - 302
Target Start/End: Original strand, 9729738 - 9729836
Alignment:
Q  204 ttgaattttgtaaatgtcaatcaatttagtttttccgtcaagtctcatcgttaacggtgttgacgtgtcacgttaagcgctgacgtaaagttccaagtc 302  Q
    ||||||||| |||||| ||| ||||||||||| ||  | |||||| || |||||   |||||| |||||||||||| || ||||||  |||||||||||    
T  9729738 ttgaattttataaatgccaaccaatttagtttctctattaagtcttattgttaataatgttgatgtgtcacgttaaacgttgacgtggagttccaagtc 9729836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University