View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6698_high_13 (Length: 540)

Name: NF6698_high_13
Description: NF6698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6698_high_13
NF6698_high_13
[»] chr3 (2 HSPs)
chr3 (209-526)||(41664287-41664604)
chr3 (20-102)||(41664087-41664169)
[»] chr2 (3 HSPs)
chr2 (41-88)||(12125296-12125343)
chr2 (232-319)||(12125459-12125546)
chr2 (448-521)||(25523104-25523177)
[»] chr7 (1 HSPs)
chr7 (262-319)||(44527160-44527217)
[»] chr1 (1 HSPs)
chr1 (220-297)||(37806250-37806327)


Alignment Details
Target: chr3 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 209 - 526
Target Start/End: Original strand, 41664287 - 41664604
Alignment:
Q  209 ttttatcttactacgatgttcattagtttaaattgacatattcacttaaactcattacaaatttgatgaagacttgagcgtcaaagttggagatctgaaa 308  Q
    |||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41664287 ttttatcttagtacgatgttcattagttcaaattgacatattcacttaaactcattacaaatttgatgaagacttgagcgtcaaagttggagatctgaaa 41664386  T
Q  309 acatgaatattcatgtcgcttttattgtcatatttgtgggcattatcataattactaaaacttcaaagagacgaataatccggttagacgacatattatt 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||    
T  41664387 acatgaatattcatgtcgcttttattgtcatatttgtgggcattatcataattgctcaaacttcaaagagacgaataatccggttagacgacatattatt 41664486  T
Q  409 gctcacatagatcagaattgctaggcgaattatggtctgattgaagacaatattcacttatttatccattgcgacttttttggtagaatttggcctatta 508  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41664487 gctcacatagatcagaattgctaggcgaattatggtatgattgaagacaatattcacttatttatccattgcgacttttttggtagaatttggcctatta 41664586  T
Q  509 tttacggttggttgggat 526  Q
    ||||||||||||||||||    
T  41664587 tttacggttggttgggat 41664604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 20 - 102
Target Start/End: Original strand, 41664087 - 41664169
Alignment:
Q  20 gtttttggcctgaaatcacccctcaacaccgtttctttttctctttttatttaaataagtggttatccatgtatatctgcttc 102  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41664087 gtttttggcctgaaatcacccctcaacaccgtttctttttctctttttatttaaataagtggttatccatgtatatctgcttc 41664169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 41 - 88
Target Start/End: Original strand, 12125296 - 12125343
Alignment:
Q  41 ctcaacaccgtttctttttctctttttatttaaataagtggttatcca 88  Q
    |||||||||| |||||| ||||||||||||||||||||| ||||||||    
T  12125296 ctcaacaccgcttctttctctctttttatttaaataagttgttatcca 12125343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 232 - 319
Target Start/End: Original strand, 12125459 - 12125546
Alignment:
Q  232 tagtttaaattgacatattcacttaaactcattacaaatttgatgaagacttgagcgtcaaagttggagatctgaaaacatgaatatt 319  Q
    ||||||| ||||||||||||||||  ||| |||||| || ||||||| ||||||||||||| |||  ||||| ||| |||| ||||||    
T  12125459 tagtttatattgacatattcacttccactaattacatatatgatgaacacttgagcgtcaatgttaaagatccgaacacataaatatt 12125546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 448 - 521
Target Start/End: Original strand, 25523104 - 25523177
Alignment:
Q  448 attgaagacaatattcacttatttatccattgcgacttttttggtagaatttggcctattatttacggttggtt 521  Q
    ||||||||||||| ||| |||||| |||| || ||||||| | || ||||||| |||||||||||||| |||||    
T  25523104 attgaagacaataatcatttatttttccaatgtgacttttattgtcgaatttgacctattatttacggctggtt 25523177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 262 - 319
Target Start/End: Complemental strand, 44527217 - 44527160
Alignment:
Q  262 attacaaatttgatgaagacttgagcgtcaaagttggagatctgaaaacatgaatatt 319  Q
    |||||||||||||| |||||||||||||||| |||| | ||| ||||  |||||||||    
T  44527217 attacaaatttgataaagacttgagcgtcaatgttgcaaatccgaaagtatgaatatt 44527160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 220 - 297
Target Start/End: Original strand, 37806250 - 37806327
Alignment:
Q  220 tacgatgttcattagtttaaattgacatattcacttaaactcattacaaatttgatgaagacttgagcgtcaaagttg 297  Q
    |||| ||||||||  |||| ||||||||||||| || ||||| ||||| |||| |||||||||| || ||||| ||||    
T  37806250 tacggtgttcattgatttagattgacatattcatttcaactcgttacagatttaatgaagacttaagtgtcaatgttg 37806327  T

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