View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6698_high_15 (Length: 514)
Name: NF6698_high_15
Description: NF6698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6698_high_15 |
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| [»] scaffold0727 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 453; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 14 - 499
Target Start/End: Complemental strand, 47901022 - 47900537
Alignment:
| Q |
14 |
acagcaaaactggaaccccacgaacgattaaacaactcagcaaagcaactaacactttcaattttcaaacaaaataacaacaacgcaaagattcgaatct |
113 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47901022 |
acagcaaaactggaaccccacgaatgattaaacaactcagcaaagcaactaacactttcaattttcaaacaaaataacaacaacgcaaagattcgaatct |
47900923 |
T |
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| Q |
114 |
tccgtttagaacattccatcacaagtaacaatctaacggttcaaaatccaactaagcttcaacaaaaattccatagcattattccagcatcaccacaaca |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
47900922 |
tccgtttagaacattccatcacaagtaacaatctaacggttcaaaatccaactaagcttcaacaaaaattccatagcataattccagcatcaccacaaca |
47900823 |
T |
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| Q |
214 |
ttaaaacaaacgttgttcttgttaacttcttctctctaattcttcctcgtatttcgacaacacttccacaccaatcannnnnnncacctctctctgccgg |
313 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
47900822 |
ttaaaacaaacgttgttcttgctaacttcttctctctaattcttcctcgtatttcgacaacacttccacaccaatcatttttttcacctctctctgccgg |
47900723 |
T |
|
| Q |
314 |
agaaaccttgttccggtggtggcgggaacgaggtttgtttgaccgttaggtgtgtccacatggaggtttcatacgtgtcaccggaaagctctaaggttgt |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47900722 |
agaaaccttgttccggtggtggcgggaacgaggtttgtttgaccgttaggtgtgtccacatggaggtttcatacgtgtcaccggaaagctctaaggttgt |
47900623 |
T |
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| Q |
414 |
gtcaccaagaacactaagaaagtctatagtggaaaaagtgtttggaaaatcgtattccattaaaggcagtggaagcttcaagaaac |
499 |
Q |
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| T |
47900622 |
gtcaccaagaacactaagaaagtctatagtggaaaaagtgtttggaaaatcgtattccattaaaggcagtggaagcttcaagaaac |
47900537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 311 - 497
Target Start/End: Original strand, 23554415 - 23554613
Alignment:
| Q |
311 |
cggagaaaccttgttccggtggtggcgggaacgaggtttgtttgaccgttaggtgtgtccac------------atggaggtttcatacgtgtcaccgga |
398 |
Q |
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|||||||| ||||||||| ||||||||| ||| ||||||||||||| ||||||||||||||| |||||||||||||| || ||| || |
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| T |
23554415 |
cggagaaatcttgttccgatggtggcggcaacaaggtttgtttgactgttaggtgtgtccactttttcggacacatggaggtttcatatgttacacgaga |
23554514 |
T |
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| Q |
399 |
aagctctaaggttgtgtcaccaagaacactaagaaagtctatagtggaaaaagtgtttggaaaatcgtattccattaaaggcagtggaagcttcaagaa |
497 |
Q |
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| T |
23554515 |
aagctctaaggttgtatcaccaagaacaccaagtaagtctatagtggaaaaagtgtttggaaaatcgtatttcattagagggagtggaagcttcaagaa |
23554613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0727 (Bit Score: 94; Significance: 1e-45; HSPs: 1)
Name: scaffold0727
Description:
Target: scaffold0727; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 311 - 497
Target Start/End: Original strand, 6536 - 6734
Alignment:
| Q |
311 |
cggagaaaccttgttccggtggtggcgggaacgaggtttgtttgaccgttaggtgtgtccac------------atggaggtttcatacgtgtcaccgga |
398 |
Q |
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|||||||| ||||||||| ||||||||| ||| ||||||||||||| ||||||||||||||| |||||||||||||| || ||| || |
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| T |
6536 |
cggagaaatcttgttccgatggtggcggcaacaaggtttgtttgactgttaggtgtgtccactttttcggacacatggaggtttcatatgttacacgaga |
6635 |
T |
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| Q |
399 |
aagctctaaggttgtgtcaccaagaacactaagaaagtctatagtggaaaaagtgtttggaaaatcgtattccattaaaggcagtggaagcttcaagaa |
497 |
Q |
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| T |
6636 |
aagctctaaggttgtatcaccaagaacaccaagtaagtctatagtggaaaaagtgtttggaaaatcgtatttcattagagggagtggaagcttcaagaa |
6734 |
T |
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